Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004638.1

Orthogroup ID

OG0000282

Physical Location & Seq

Genomic Coordinates Forward (+)

2110 .. 2637

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004638.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

atgtctattcgtctagggaatgtacgcgccatactagtctcatccccaaaagcagcaaagctattcctcagaacccatgacgccaatttcgctagccggccaagagtccaggcctcggagcacctagcttatggcatgatgggcctggtatttgccgagtacggcccctattggccccatgtgaggaagctctgcaccctcgagattctttgtccctcgaaagccgaggcttttgcgccactgcgaatggaggagatagggttgttggtgctgtcactgaagaaagttggagagggaggtgaggtggtggatgttactaacaagatttatggcgttaatgaggatataacgtataggatgatattgggttgtgcaaaagatgatggtaggtttggtttgaaggaaattgttcaggaagctatgttgttgaccggagcattcaacatagctgattttgtgcccttcctcggtccatttgattttcatgtaccgactccttttcctaatacaataataccagtccactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

175

Amino Acids

19.38

Weight (kDa)

6.96

Isoelectric Point (pI)

35.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000282)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12350 FvH4_5g12380 FvH4_5g12392 FvH4_5g12400 FvH4_5g12430
malus_domestica	MD06G1213300.v1.1 MD06G1213500.v1.1 MD06G1213700.v1.1 MD06G1213800.v1.1 MD06G1213900.v1.1 MD06G1214000.v1.1 MD06G1214400.v1.1 MD14G1224300.v1.1 MD14G1224400.v1.1 MD14G1224600.v1.1 MD14G1224700.v1.1 MD14G1224800.v1.1 MD14G1224900.v1.1 MD14G1225100.v1.1 MD14G1225400.v1.1
prunus_persica	Prupe.5G219700_v2.0.a1 Prupe.5G219800_v2.0.a1 Prupe.5G219900_v2.0.a1 Prupe.8G078500_v2.0.a1
pyrus_communis	pycom06g19100 pycom14g18590 pycom14g18600 pycom14g18610 pycom14g18660
rosa_chinensis	RchiOBHm_Chr0c12g0499591 RchiOBHm_Chr2g0140591 RchiOBHm_Chr2g0140631 RchiOBHm_Chr2g0140641 RchiOBHm_Chr2g0140651 RchiOBHm_Chr4g0417991 RchiOBHm_Chr4g0418001 RchiOBHm_Chr4g0418101 RchiOBHm_Chr4g0418111 RchiOBHm_Chr4g0418121 RchiOBHm_Chr6g0280191 RchiOBHm_Chr6g0280241 RchiOBHm_Chr6g0280251 RchiOBHm_Chr7g0185031 RchiOBHm_Chr7g0185051 RchiOBHm_Chr7g0185081 RchiOBHm_Chr7g0185091 RchiOBHm_Chr7g0185111 RchiOBHm_Chr7g0185131 RchiOBHm_Chr7g0185151 RchiOBHm_Chr7g0185161 RchiOBHm_Chr7g0185191 RchiOBHm_Chr7g0222431
rosa_laevigata	RLG00000002061 RLG00000004934 RLG00000004935 RLG00000004937 RLG00000013071 RLG00000013077 RLG00000019621 RLG00000019881 RLG00000019884 RLG00000019887 RLG00000019888 RLG00000028839
rosa_multiflora	Rmu_co8014370.1_g000001 Rmu_co8334683.1_g000001 Rmu_co8440383.1_g000001 Rmu_sc0002826.1_g000008 Rmu_sc0002826.1_g000009 Rmu_sc0002826.1_g000030 Rmu_sc0004483.1_g000005 Rmu_sc0004638.1_g000003 Rmu_sc0004638.1_g000004 Rmu_sc0005756.1_g000003 Rmu_sc0006493.1_g000023 Rmu_sc0006493.1_g000024 Rmu_sc0007137.1_g000017 Rmu_sc0008496.1_g000022 Rmu_sc0008769.1_g000003 Rmu_sc0013612.1_g000026 Rmu_sc0013864.1_g000001 Rmu_sc0013864.1_g000007 Rmu_sc0013864.1_g000008 Rmu_sc0030128.1_g000001 Rmu_sc0041660.1_g000001 Rmu_ssc0000289.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104640 Rroxscaffold_3G00253970 Rroxscaffold_3G00269170 Rroxscaffold_3G00269200 Rroxscaffold_3G00269210 Rroxscaffold_3G00269220 Rroxscaffold_3G00269230 Rroxscaffold_7G00188320
rosa_rugosa	Rorug01G0052300 Rorug05G0212000 Rorug06G0130700 Rorug06G0131100 Rorug06G0466200 Rorug06G0466300 Rorug06G0466400 Rorug06G0466500 Rorug06G0466700 Rorug07G0208500 Rorug07G0294600
rosa_samantha	Rh4AG137600 Rh6DG237300 Rh6DG237800 Rh7AG076200 Rh7AG076300 Rh7AG076500 Rh7AG076600 Rh7AG350700 Rh7BG070800 Rh7BG070900 Rh7BG071000 Rh7BG071100
rosa_wichuraiana	Rw6G020990 Rw6G021010 Rw7G005900 Rw7G005910 Rw7G005920 Rw7G005940 Rw7G005950 Rw7G005970 Rw7G029600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	27
AcoI	YGGCCR	1 cut(s)	98
AcuI	CTGAAG	1 cut(s)	299
AcyI	GRCGYC	1 cut(s)	81
AfaI	GTAC	3 cut(s)	24, 161, 489
AfiI	CCNNNNNNNGG	3 cut(s)	115, 183, 467
AgsI	TTSAA	2 cut(s)	400, 442
AhlI	ACTAGT	1 cut(s)	34
AjnI	CCWGG	2 cut(s)	108, 144
AluBI	AGCT	5 cut(s)	61, 128, 190, 419, 449
AluI	AGCT	5 cut(s)	61, 128, 190, 419, 449
Alw21I	GWGCWC	1 cut(s)	123
Alw26I	GTCTC	1 cut(s)	43
Ama87I	CYCGRG	1 cut(s)	200
AoxI	GGCC	5 cut(s)	98, 111, 142, 163, 173
ApeKI	GCWGC	1 cut(s)	53
ArsI	GACNNNNNNTTYG	2 cut(s)	71, 103
Asp700I	GAANNNNTTC	1 cut(s)	408
AspLEI	GCGC	2 cut(s)	29, 238
AspS9I	GGNCC	4 cut(s)	142, 164, 174, 470
AsuHPI	GGTGA	1 cut(s)	311
AsuNHI	GCTAGC	1 cut(s)	92
AvaI	CYCGRG	1 cut(s)	200
AvaII	GGWCC	1 cut(s)	470
BaeGI	GKGCMC	1 cut(s)	462
Bbv12I	GWGCWC	1 cut(s)	123
BbvI	GCAGC	1 cut(s)	65
BccI	CCATC	2 cut(s)	133, 377
BceAI	ACGGC	1 cut(s)	178
BcgI	CGANNNNNNTGC	2 cut(s)	215, 249
BciT130I	CCWGG	2 cut(s)	110, 146
BcoDI	GTCTC	1 cut(s)	43
BcuI	ACTAGT	1 cut(s)	34
BfaI	CTAG	5 cut(s)	14, 35, 93, 125, 526
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
Bme1390I	CCNGG	2 cut(s)	110, 146
Bme18I	GGWCC	1 cut(s)	470
BmeT110I	CYCGRG	1 cut(s)	200
BmgT120I	GGNCC	4 cut(s)	142, 164, 174, 470
BmiI	GGNNCC	2 cut(s)	166, 176
BmrFI	CCNGG	2 cut(s)	110, 146
BmtI	GCTAGC	1 cut(s)	96
BsaHI	GRCGYC	1 cut(s)	81
BsaJI	CCNNGG	3 cut(s)	114, 225, 466
BsaWI	WCCGGW	1 cut(s)	431
BsaXI	ACNNNNNCTCC	4 cut(s)	245, 275, 288, 318
Bsc4I	CCNNNNNNNGG	3 cut(s)	115, 183, 467
Bse118I	RCCGGY	1 cut(s)	96
Bse1I	ACTGG	1 cut(s)	518
BseBI	CCWGG	2 cut(s)	110, 146
BseDI	CCNNGG	3 cut(s)	114, 225, 466
BseGI	GGATG	3 cut(s)	41, 316, 363
BseLI	CCNNNNNNNGG	3 cut(s)	115, 183, 467
BseMII	CTCAG	1 cut(s)	82
BseNI	ACTGG	1 cut(s)	518
BseRI	GAGGAG	1 cut(s)	266
BseSI	GKGCMC	1 cut(s)	462
BseXI	GCAGC	1 cut(s)	65
BsgI	GTGCAG	1 cut(s)	178
Bsh1236I	CGCG	1 cut(s)	27
BshFI	GGCC	5 cut(s)	100, 113, 144, 165, 175
BsiHKAI	GWGCWC	1 cut(s)	123
BsiHKCI	CYCGRG	1 cut(s)	200
BsiSI	CCGG	2 cut(s)	97, 432
BslFI	GGGAC	1 cut(s)	198
BslI	CCNNNNNNNGG	3 cut(s)	115, 183, 467
BsmAI	GTCTC	1 cut(s)	43
BsmFI	GGGAC	1 cut(s)	198
BsmI	GAATGC	1 cut(s)	437
BsnI	GGCC	5 cut(s)	100, 113, 144, 165, 175
BsoBI	CYCGRG	1 cut(s)	200
Bsp1286I	GDGCHC	2 cut(s)	123, 462
BspANI	GGCC	5 cut(s)	100, 113, 144, 165, 175
BspCNI	CTCAG	1 cut(s)	81
BspFNI	CGCG	1 cut(s)	27
BspLI	GGNNCC	2 cut(s)	166, 176
BspOI	GCTAGC	1 cut(s)	96
BsrFI	RCCGGY	1 cut(s)	96
BsrI	ACTGG	1 cut(s)	518
BssAI	RCCGGY	1 cut(s)	96
BssECI	CCNNGG	3 cut(s)	114, 225, 466
BssNI	GRCGYC	1 cut(s)	81
Bst2UI	CCWGG	2 cut(s)	110, 146
BstACI	GRCGYC	1 cut(s)	81
BstC8I	GCNNGC	2 cut(s)	94, 98
BstDEI	CTNAG	1 cut(s)	68
BstF5I	GGATG	3 cut(s)	41, 316, 363
BstFNI	CGCG	1 cut(s)	27
BstHHI	GCGC	2 cut(s)	29, 238
BstMAI	GTCTC	1 cut(s)	43
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 141
BstNI	CCWGG	2 cut(s)	110, 146
BstSCI	CCNGG	2 cut(s)	108, 144
BstSLI	GKGCMC	1 cut(s)	462
BstUI	CGCG	1 cut(s)	27
BstV1I	GCAGC	1 cut(s)	65
BsuRI	GGCC	5 cut(s)	100, 113, 144, 165, 175
BtsCI	GGATG	3 cut(s)	41, 316, 363
BtsI	GCAGTG	1 cut(s)	239
BtsIMutI	CAGTG	2 cut(s)	239, 275
Cac8I	GCNNGC	2 cut(s)	94, 98
CfoI	GCGC	2 cut(s)	29, 238
Cfr10I	RCCGGY	1 cut(s)	96
Cfr13I	GGNCC	4 cut(s)	142, 164, 174, 470
CseI	GACGC	1 cut(s)	89
Csp6I	GTAC	3 cut(s)	23, 160, 488
CviAII	CATG	4 cut(s)	77, 136, 179, 485
CviQI	GTAC	3 cut(s)	23, 160, 488
DdeI	CTNAG	1 cut(s)	68
EaeI	YGGCCR	1 cut(s)	98
Eco147I	AGGCCT	1 cut(s)	113
Eco47I	GGWCC	1 cut(s)	470
Eco57I	CTGAAG	1 cut(s)	299
Eco88I	CYCGRG	1 cut(s)	200
EcoRII	CCWGG	2 cut(s)	108, 144
FaeI	CATG	4 cut(s)	80, 139, 182, 488
FaqI	GGGAC	1 cut(s)	198
FatI	CATG	4 cut(s)	76, 135, 178, 484
Fnu4HI	GCNGC	1 cut(s)	54
FokI	GGATG	3 cut(s)	28, 323, 370
Fsp4HI	GCNGC	1 cut(s)	54
FspBI	CTAG	5 cut(s)	14, 35, 93, 125, 526
GlaI	GCGC	2 cut(s)	28, 237
GluI	GCNGC	1 cut(s)	54
HaeIII	GGCC	5 cut(s)	100, 113, 144, 165, 175
HapII	CCGG	2 cut(s)	97, 432
HgaI	GACGC	1 cut(s)	89
HhaI	GCGC	2 cut(s)	29, 238
Hin1I	GRCGYC	1 cut(s)	81
Hin1II	CATG	4 cut(s)	80, 139, 182, 488
Hin6I	GCGC	2 cut(s)	27, 236
HinP1I	GCGC	2 cut(s)	27, 236
HincII	GTYRAC	1 cut(s)	429
HindII	GTYRAC	1 cut(s)	429
HinfI	GANTC	3 cut(s)	105, 205, 493
HpaII	CCGG	2 cut(s)	97, 432
HphI	GGTGA	1 cut(s)	311
Hpy166II	GTNNAC	2 cut(s)	429, 523
Hpy188I	TCNGA	2 cut(s)	71, 118
Hpy188III	TCNNGA	2 cut(s)	202, 413
Hpy8I	GTNNAC	2 cut(s)	429, 523
HpyAV	CCTTC	2 cut(s)	394, 472
HpyCH4IV	ACGT	1 cut(s)	350
HpyCH4V	TGCA	2 cut(s)	195, 374
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 141
HpyF3I	CTNAG	1 cut(s)	68
HpySE526I	ACGT	1 cut(s)	350
Hsp92I	GRCGYC	1 cut(s)	81
Hsp92II	CATG	4 cut(s)	80, 139, 182, 488
HspAI	GCGC	2 cut(s)	27, 236
KroI	GCCGGC	1 cut(s)	96
KroNI	GCCGGC	1 cut(s)	98
LmnI	GCTCC	2 cut(s)	118, 434
LpnPI	CCDG	7 cut(s)	95, 110, 122, 131, 158, 398, 445
Lsp1109I	GCAGC	1 cut(s)	65
MaeI	CTAG	5 cut(s)	14, 35, 93, 125, 526
MaeII	ACGT	1 cut(s)	350
MaeIII	GTNAC	2 cut(s)	273, 313
MboII	GAAGA	1 cut(s)	292
MhlI	GDGCHC	2 cut(s)	123, 462
MluCI	AATT	2 cut(s)	85, 405
MlyI	GAGTC	2 cut(s)	114, 487
MmeI	TCCRAC	1 cut(s)	268
MroNI	GCCGGC	1 cut(s)	96
MroXI	GAANNNNTTC	1 cut(s)	408
MseI	TTAA	1 cut(s)	336
MspI	CCGG	2 cut(s)	97, 432
MspR9I	CCNGG	2 cut(s)	110, 146
Mva1269I	GAATGC	1 cut(s)	437
MvaI	CCWGG	2 cut(s)	110, 146
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	2 cut(s)	89, 141
NaeI	GCCGGC	1 cut(s)	98
NgoMIV	GCCGGC	1 cut(s)	96
NheI	GCTAGC	1 cut(s)	92
NlaIII	CATG	4 cut(s)	80, 139, 182, 488
NlaIV	GGNNCC	2 cut(s)	166, 176
NmeAIII	GCCGAG	2 cut(s)	181, 250
NmuCI	GTSAC	1 cut(s)	273
PaeR7I	CTCGAG	1 cut(s)	200
PceI	AGGCCT	1 cut(s)	113
PctI	GAATGC	1 cut(s)	437
PdiI	GCCGGC	1 cut(s)	98
PdmI	GAANNNNTTC	1 cut(s)	408
PfeI	GAWTC	1 cut(s)	205
PkrI	GCNGC	1 cut(s)	55
PleI	GAGTC	2 cut(s)	113, 487
PpsI	GAGTC	2 cut(s)	113, 487
Psp6I	CCWGG	2 cut(s)	108, 144
PspGI	CCWGG	2 cut(s)	108, 144
PspN4I	GGNNCC	2 cut(s)	166, 176
PspPI	GGNCC	4 cut(s)	142, 164, 174, 470
RsaI	GTAC	3 cut(s)	24, 161, 489
RsaNI	GTAC	3 cut(s)	23, 160, 488
SaqAI	TTAA	1 cut(s)	336
SatI	GCNGC	1 cut(s)	54
Sau96I	GGNCC	4 cut(s)	142, 164, 174, 470
SchI	GAGTC	2 cut(s)	114, 487
ScrFI	CCNGG	2 cut(s)	110, 146
SduI	GDGCHC	2 cut(s)	123, 462
Sfr274I	CTCGAG	1 cut(s)	200
SinI	GGWCC	1 cut(s)	470
SlaI	CTCGAG	1 cut(s)	200
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
SpeI	ACTAGT	1 cut(s)	34
Sse9I	AATT	2 cut(s)	85, 405
SseBI	AGGCCT	1 cut(s)	113
SspMI	CTAG	5 cut(s)	14, 35, 93, 125, 526
StuI	AGGCCT	1 cut(s)	113
StyD4I	CCNGG	2 cut(s)	108, 144
TaiI	ACGT	1 cut(s)	353
TaqI	TCGA	2 cut(s)	201, 218
TaqII	GACCGA	1 cut(s)	458
TasI	AATT	2 cut(s)	85, 405
TfiI	GAWTC	1 cut(s)	205
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TscAI	CASTG	2 cut(s)	246, 282
TseFI	GTSAC	1 cut(s)	273
TseI	GCWGC	1 cut(s)	53
Tsp45I	GTSAC	1 cut(s)	273
TspDTI	ATGAA	1 cut(s)	473
TspRI	CASTG	2 cut(s)	246, 282
VpaK11BI	GGWCC	1 cut(s)	470
XhoI	CTCGAG	1 cut(s)	200
XmnI	GAANNNNTTC	1 cut(s)	408
XspI	CTAG	5 cut(s)	14, 35, 93, 125, 526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.