Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000282

Physical Location & Seq

Genomic Coordinates Reverse (-)

62134753 .. 62135358

Gene Structure 606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00269220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGGTTCATTGCTTTAACCGGGAGCTCCCAAATGGCTTGCTCCCTCAAGACTTGGACATGTCCGAGGATTTCGGCTTATCACCGTCAAAAGCCAAACACTTGCTTGCGAAGCCAACTTACCGTCTTATGTTGATACCGGGTTGTACAAAGAATGATGATATGAAGGGAATAATTGAGGAGCCTCTTGGACCTGAGCATTCAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

68

Amino Acids

7.59

Weight (kDa)

5.43

Isoelectric Point (pI)

53.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000282)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12350 FvH4_5g12380 FvH4_5g12392 FvH4_5g12400 FvH4_5g12430
malus_domestica	MD06G1213300.v1.1 MD06G1213500.v1.1 MD06G1213700.v1.1 MD06G1213800.v1.1 MD06G1213900.v1.1 MD06G1214000.v1.1 MD06G1214400.v1.1 MD14G1224300.v1.1 MD14G1224400.v1.1 MD14G1224600.v1.1 MD14G1224700.v1.1 MD14G1224800.v1.1 MD14G1224900.v1.1 MD14G1225100.v1.1 MD14G1225400.v1.1
prunus_persica	Prupe.5G219700_v2.0.a1 Prupe.5G219800_v2.0.a1 Prupe.5G219900_v2.0.a1 Prupe.8G078500_v2.0.a1
pyrus_communis	pycom06g19100 pycom14g18590 pycom14g18600 pycom14g18610 pycom14g18660
rosa_chinensis	RchiOBHm_Chr0c12g0499591 RchiOBHm_Chr2g0140591 RchiOBHm_Chr2g0140631 RchiOBHm_Chr2g0140641 RchiOBHm_Chr2g0140651 RchiOBHm_Chr4g0417991 RchiOBHm_Chr4g0418001 RchiOBHm_Chr4g0418101 RchiOBHm_Chr4g0418111 RchiOBHm_Chr4g0418121 RchiOBHm_Chr6g0280191 RchiOBHm_Chr6g0280241 RchiOBHm_Chr6g0280251 RchiOBHm_Chr7g0185031 RchiOBHm_Chr7g0185051 RchiOBHm_Chr7g0185081 RchiOBHm_Chr7g0185091 RchiOBHm_Chr7g0185111 RchiOBHm_Chr7g0185131 RchiOBHm_Chr7g0185151 RchiOBHm_Chr7g0185161 RchiOBHm_Chr7g0185191 RchiOBHm_Chr7g0222431
rosa_laevigata	RLG00000002061 RLG00000004934 RLG00000004935 RLG00000004937 RLG00000013071 RLG00000013077 RLG00000019621 RLG00000019881 RLG00000019884 RLG00000019887 RLG00000019888 RLG00000028839
rosa_multiflora	Rmu_co8014370.1_g000001 Rmu_co8334683.1_g000001 Rmu_co8440383.1_g000001 Rmu_sc0002826.1_g000008 Rmu_sc0002826.1_g000009 Rmu_sc0002826.1_g000030 Rmu_sc0004483.1_g000005 Rmu_sc0004638.1_g000003 Rmu_sc0004638.1_g000004 Rmu_sc0005756.1_g000003 Rmu_sc0006493.1_g000023 Rmu_sc0006493.1_g000024 Rmu_sc0007137.1_g000017 Rmu_sc0008496.1_g000022 Rmu_sc0008769.1_g000003 Rmu_sc0013612.1_g000026 Rmu_sc0013864.1_g000001 Rmu_sc0013864.1_g000007 Rmu_sc0013864.1_g000008 Rmu_sc0030128.1_g000001 Rmu_sc0041660.1_g000001 Rmu_ssc0000289.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104640 Rroxscaffold_3G00253970 Rroxscaffold_3G00269170 Rroxscaffold_3G00269200 Rroxscaffold_3G00269210 Rroxscaffold_3G00269220 Rroxscaffold_3G00269230 Rroxscaffold_7G00188320
rosa_rugosa	Rorug01G0052300 Rorug05G0212000 Rorug06G0130700 Rorug06G0131100 Rorug06G0466200 Rorug06G0466300 Rorug06G0466400 Rorug06G0466500 Rorug06G0466700 Rorug07G0208500 Rorug07G0294600
rosa_samantha	Rh4AG137600 Rh6DG237300 Rh6DG237800 Rh7AG076200 Rh7AG076300 Rh7AG076500 Rh7AG076600 Rh7AG350700 Rh7BG070800 Rh7BG070900 Rh7BG071000 Rh7BG071100
rosa_wichuraiana	Rw6G020990 Rw6G021010 Rw7G005900 Rw7G005910 Rw7G005920 Rw7G005940 Rw7G005950 Rw7G005970 Rw7G029600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	145
AflIII	ACRYGT	1 cut(s)	57
AgsI	TTSAA	1 cut(s)	201
AluBI	AGCT	1 cut(s)	25
AluI	AGCT	1 cut(s)	25
Alw21I	GWGCWC	1 cut(s)	27
AspS9I	GGNCC	1 cut(s)	188
AsuC2I	CCSGG	2 cut(s)	20, 138
AsuHPI	GGTGA	1 cut(s)	72
AvaII	GGWCC	1 cut(s)	188
BanII	GRGCYC	1 cut(s)	27
BarI	GAAGNNNNNNTAC	2 cut(s)	101, 133
Bbv12I	GWGCWC	1 cut(s)	27
BcnI	CCSGG	2 cut(s)	20, 138
Bme1390I	CCNGG	2 cut(s)	20, 138
Bme18I	GGWCC	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	188
BmiI	GGNNCC	1 cut(s)	180
BmrFI	CCNGG	2 cut(s)	20, 138
Bpu10I	CCTNAGC	1 cut(s)	192
BpuEI	CTTGAG	1 cut(s)	30
BpuMI	CCSGG	2 cut(s)	20, 138
BsaJI	CCNNGG	1 cut(s)	63
Bse3DI	GCAATG	1 cut(s)	7
BseDI	CCNNGG	1 cut(s)	63
BseMI	GCAATG	1 cut(s)	7
BseMII	CTCAG	1 cut(s)	183
BseRI	GAGGAG	1 cut(s)	191
BsiHKAI	GWGCWC	1 cut(s)	27
BsiSI	CCGG	2 cut(s)	19, 137
BsmI	GAATGC	1 cut(s)	196
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp1407I	TGTACA	1 cut(s)	143
BspCNI	CTCAG	1 cut(s)	184
BspLI	GGNNCC	1 cut(s)	180
BsrDI	GCAATG	1 cut(s)	7
BsrGI	TGTACA	1 cut(s)	143
BssECI	CCNNGG	1 cut(s)	63
Bst4CI	ACNGT	2 cut(s)	84, 122
BstAUI	TGTACA	1 cut(s)	143
BstC8I	GCNNGC	2 cut(s)	38, 105
BstDEI	CTNAG	1 cut(s)	192
BstMWI	GCNNNNNNNGC	1 cut(s)	109
BstNSI	RCATGY	1 cut(s)	61
BstSCI	CCNGG	2 cut(s)	18, 136
Cac8I	GCNNGC	2 cut(s)	38, 105
Cfr13I	GGNCC	1 cut(s)	188
Csp6I	GTAC	1 cut(s)	144
CviAII	CATG	1 cut(s)	58
CviJI	RGCY	6 cut(s)	25, 36, 75, 92, 112, 181
CviKI_1	RGCY	6 cut(s)	25, 36, 75, 92, 112, 181
CviQI	GTAC	1 cut(s)	144
DdeI	CTNAG	1 cut(s)	192
Ecl136II	GAGCTC	1 cut(s)	25
Eco24I	GRGCYC	1 cut(s)	27
Eco47I	GGWCC	1 cut(s)	188
Eco53kI	GAGCTC	1 cut(s)	25
EcoICRI	GAGCTC	1 cut(s)	25
EcoT38I	GRGCYC	1 cut(s)	27
FaeI	CATG	1 cut(s)	61
FaiI	YATR	4 cut(s)	59, 128, 161, 205
FatI	CATG	1 cut(s)	57
FriOI	GRGCYC	1 cut(s)	27
HapII	CCGG	2 cut(s)	19, 137
Hin1II	CATG	1 cut(s)	61
HpaII	CCGG	2 cut(s)	19, 137
HphI	GGTGA	1 cut(s)	72
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	1 cut(s)	47
HpyAV	CCTTC	1 cut(s)	157
HpyCH4III	ACNGT	2 cut(s)	84, 122
HpyF10VI	GCNNNNNNNGC	1 cut(s)	109
HpyF3I	CTNAG	1 cut(s)	192
Hsp92II	CATG	1 cut(s)	61
LmnI	GCTCC	4 cut(s)	22, 30, 45, 178
LpnPI	CCDG	2 cut(s)	32, 150
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	1 cut(s)	171
MnlI	CCTC	4 cut(s)	54, 58, 169, 192
MseI	TTAA	1 cut(s)	15
MspI	CCGG	2 cut(s)	19, 137
MspR9I	CCNGG	2 cut(s)	20, 138
Mva1269I	GAATGC	1 cut(s)	196
MwoI	GCNNNNNNNGC	1 cut(s)	109
NciI	CCSGG	2 cut(s)	20, 138
NlaIII	CATG	1 cut(s)	61
NlaIV	GGNNCC	1 cut(s)	180
NspI	RCATGY	1 cut(s)	61
PciI	ACATGT	1 cut(s)	57
PctI	GAATGC	1 cut(s)	196
PscI	ACATGT	1 cut(s)	57
Psp124BI	GAGCTC	1 cut(s)	27
PspN4I	GGNNCC	1 cut(s)	180
PspPI	GGNCC	1 cut(s)	188
RsaI	GTAC	1 cut(s)	145
RsaNI	GTAC	1 cut(s)	144
SacI	GAGCTC	1 cut(s)	27
SaqAI	TTAA	1 cut(s)	15
Sau96I	GGNCC	1 cut(s)	188
ScrFI	CCNGG	2 cut(s)	20, 138
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	2 cut(s)	27, 193
SinI	GGWCC	1 cut(s)	188
SmlI	CTYRAG	1 cut(s)	45
SmoI	CTYRAG	1 cut(s)	45
Sse9I	AATT	1 cut(s)	171
SstI	GAGCTC	1 cut(s)	27
StyD4I	CCNGG	2 cut(s)	18, 136
TaaI	ACNGT	2 cut(s)	84, 122
TasI	AATT	1 cut(s)	171
TatI	WGTACW	1 cut(s)	143
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TspDTI	ATGAA	1 cut(s)	176
VpaK11BI	GGWCC	1 cut(s)	188
XceI	RCATGY	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.