Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000282

Physical Location & Seq

Genomic Coordinates Reverse (-)

5406244 .. 5438168

Gene Structure 31925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG076200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGCAAATACCAAATAACAAGCGACTCCACACAAAACAGAAAGCCAAGCCAGAAAAGATGAGTCCTTCAACAATAATAGCCATCGTCCTGGTTCTCCTCACATGCCTTTGGTCACTCATCTCTGCTTCCTCCAAATCAAAACACAAAAAACTACCACCCGGCCCTCGGTCACTGCCAATAATCGGAAATCTCCACATGCTAGGCAACCTCCCCCATCGAAGCCTCCAACACCTGGCCAAAAAATATGGACACATCATGTCCATCCGTCTAGGCAGTGTTCCGACCATAGTAGTCTCCTCCCCCAAAGCTGCAGAGCTATTCCTCAAAACTCACGACACTAATTTCGCCAGCCGGCCCAAAATCCAAGCCTCGGAGTACATATCCTACGGCACAAAGGGCATGGCCTTTTCCGAATATGGTCCCTATTGGCGCCATGTAAGGAAGCTCTGTACGCTTCAGCTTTTCTGTCCAGCAAAAATAGAGGCTTTCGCGCCGCTGAGAAAGGATGAGCTGGGAGTGCTGCTGAGAAAGCTCAAGAACGCTGCAGAGGAAGGTGGTGTTGTGGATGTTAGTGAGGATATTGGTGTGATGAATGAGGACATCACGTACAGGATGGTGTTGGGTTGTAAAAGGGATGATCGGTTTGATTTGAAAGCCATTGTTGAGGAAACGTTTTCCTTGGCTGGGGCTTTCAATATATCTGATTTTGTTCCTTCCCTTGCTGCACTTGATATTCAGGCTATTCAAAGAAAGGAAATTGGAAAAGACCAAGAAATAAAGAAATTGCAAACAAATCATATGAATGTTGACTCTTCTCCAGTATTTTCTTACCAATTTACTGGCACATATAAATCAATCGACACGACCGCAACTGCTGCAAAAAGGATGAATCCTCCTAGTCCTGCAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

303

Amino Acids

33.64

Weight (kDa)

9.63

Isoelectric Point (pI)

49.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	52 - 262	3.6e-28	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000282)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12350 FvH4_5g12380 FvH4_5g12392 FvH4_5g12400 FvH4_5g12430
malus_domestica	MD06G1213300.v1.1 MD06G1213500.v1.1 MD06G1213700.v1.1 MD06G1213800.v1.1 MD06G1213900.v1.1 MD06G1214000.v1.1 MD06G1214400.v1.1 MD14G1224300.v1.1 MD14G1224400.v1.1 MD14G1224600.v1.1 MD14G1224700.v1.1 MD14G1224800.v1.1 MD14G1224900.v1.1 MD14G1225100.v1.1 MD14G1225400.v1.1
prunus_persica	Prupe.5G219700_v2.0.a1 Prupe.5G219800_v2.0.a1 Prupe.5G219900_v2.0.a1 Prupe.8G078500_v2.0.a1
pyrus_communis	pycom06g19100 pycom14g18590 pycom14g18600 pycom14g18610 pycom14g18660
rosa_chinensis	RchiOBHm_Chr0c12g0499591 RchiOBHm_Chr2g0140591 RchiOBHm_Chr2g0140631 RchiOBHm_Chr2g0140641 RchiOBHm_Chr2g0140651 RchiOBHm_Chr4g0417991 RchiOBHm_Chr4g0418001 RchiOBHm_Chr4g0418101 RchiOBHm_Chr4g0418111 RchiOBHm_Chr4g0418121 RchiOBHm_Chr6g0280191 RchiOBHm_Chr6g0280241 RchiOBHm_Chr6g0280251 RchiOBHm_Chr7g0185031 RchiOBHm_Chr7g0185051 RchiOBHm_Chr7g0185081 RchiOBHm_Chr7g0185091 RchiOBHm_Chr7g0185111 RchiOBHm_Chr7g0185131 RchiOBHm_Chr7g0185151 RchiOBHm_Chr7g0185161 RchiOBHm_Chr7g0185191 RchiOBHm_Chr7g0222431
rosa_laevigata	RLG00000002061 RLG00000004934 RLG00000004935 RLG00000004937 RLG00000013071 RLG00000013077 RLG00000019621 RLG00000019881 RLG00000019884 RLG00000019887 RLG00000019888 RLG00000028839
rosa_multiflora	Rmu_co8014370.1_g000001 Rmu_co8334683.1_g000001 Rmu_co8440383.1_g000001 Rmu_sc0002826.1_g000008 Rmu_sc0002826.1_g000009 Rmu_sc0002826.1_g000030 Rmu_sc0004483.1_g000005 Rmu_sc0004638.1_g000003 Rmu_sc0004638.1_g000004 Rmu_sc0005756.1_g000003 Rmu_sc0006493.1_g000023 Rmu_sc0006493.1_g000024 Rmu_sc0007137.1_g000017 Rmu_sc0008496.1_g000022 Rmu_sc0008769.1_g000003 Rmu_sc0013612.1_g000026 Rmu_sc0013864.1_g000001 Rmu_sc0013864.1_g000007 Rmu_sc0013864.1_g000008 Rmu_sc0030128.1_g000001 Rmu_sc0041660.1_g000001 Rmu_ssc0000289.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104640 Rroxscaffold_3G00253970 Rroxscaffold_3G00269170 Rroxscaffold_3G00269200 Rroxscaffold_3G00269210 Rroxscaffold_3G00269220 Rroxscaffold_3G00269230 Rroxscaffold_7G00188320
rosa_rugosa	Rorug01G0052300 Rorug05G0212000 Rorug06G0130700 Rorug06G0131100 Rorug06G0466200 Rorug06G0466300 Rorug06G0466400 Rorug06G0466500 Rorug06G0466700 Rorug07G0208500 Rorug07G0294600
rosa_samantha	Rh4AG137600 Rh6DG237300 Rh6DG237800 Rh7AG076200 Rh7AG076300 Rh7AG076500 Rh7AG076600 Rh7AG350700 Rh7BG070800 Rh7BG070900 Rh7BG071000 Rh7BG071100
rosa_wichuraiana	Rw6G020990 Rw6G021010 Rw7G005900 Rw7G005910 Rw7G005920 Rw7G005940 Rw7G005950 Rw7G005970 Rw7G029600

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	429
AccB7I	CCANNNNNTGG	1 cut(s)	232
AccII	CGCG	1 cut(s)	491
AciI	CCGC	2 cut(s)	494, 867
AclI	AACGTT	1 cut(s)	671
AcoI	YGGCCR	1 cut(s)	234
AcuI	CTGAAG	1 cut(s)	440
AcyI	GRCGYC	1 cut(s)	430
AfaI	GTAC	3 cut(s)	377, 451, 608
AfiI	CCNNNNNNNGG	5 cut(s)	165, 182, 232, 370, 684
AgsI	TTSAA	4 cut(s)	69, 652, 694, 746
AjnI	CCWGG	2 cut(s)	87, 231
AluBI	AGCT	6 cut(s)	308, 316, 445, 460, 511, 532
AluI	AGCT	6 cut(s)	308, 316, 445, 460, 511, 532
Alw26I	GTCTC	1 cut(s)	298
AoxI	GGCC	4 cut(s)	160, 234, 353, 402
ApeKI	GCWGC	6 cut(s)	308, 520, 542, 722, 875, 905
ArsI	GACNNNNNNTTYG	2 cut(s)	326, 358
AspLEI	GCGC	2 cut(s)	432, 493
AspS9I	GGNCC	3 cut(s)	161, 354, 419
AsuC2I	CCSGG	1 cut(s)	159
AvaII	GGWCC	1 cut(s)	419
BalI	TGGCCA	1 cut(s)	236
BanI	GGYRCC	1 cut(s)	429
BbvI	GCAGC	5 cut(s)	295, 507, 529, 709, 862
BccI	CCATC	4 cut(s)	89, 222, 269, 607
BceAI	ACGGC	1 cut(s)	403
BciT130I	CCWGG	2 cut(s)	89, 233
BcnI	CCSGG	1 cut(s)	159
BcoDI	GTCTC	1 cut(s)	298
BfaI	CTAG	3 cut(s)	200, 269, 897
BfmI	CTRYAG	3 cut(s)	309, 543, 903
BfoI	RGCGCY	1 cut(s)	433
BisI	GCNGC	7 cut(s)	309, 494, 521, 543, 723, 876, 906
BlsI	GCNGC	7 cut(s)	310, 495, 522, 544, 724, 877, 907
Bme1390I	CCNGG	3 cut(s)	89, 159, 233
Bme18I	GGWCC	1 cut(s)	419
BmgT120I	GGNCC	3 cut(s)	161, 354, 419
BmiI	GGNNCC	2 cut(s)	421, 431
BmrFI	CCNGG	3 cut(s)	89, 159, 233
BpmI	CTGGAG	1 cut(s)	801
BpuEI	CTTGAG	1 cut(s)	518
BpuMI	CCSGG	1 cut(s)	159
BsaAI	YACGTR	1 cut(s)	606
BsaHI	GRCGYC	1 cut(s)	430
BsaJI	CCNNGG	3 cut(s)	164, 369, 678
Bsc4I	CCNNNNNNNGG	5 cut(s)	165, 182, 232, 370, 684
Bse118I	RCCGGY	1 cut(s)	351
Bse1I	ACTGG	2 cut(s)	818, 844
BseBI	CCWGG	2 cut(s)	89, 233
BseDI	CCNNGG	3 cut(s)	164, 369, 678
BseGI	GGATG	6 cut(s)	261, 511, 571, 618, 640, 891
BseLI	CCNNNNNNNGG	5 cut(s)	165, 182, 232, 370, 684
BseMII	CTCAG	2 cut(s)	488, 515
BseNI	ACTGG	2 cut(s)	818, 844
BseRI	GAGGAG	2 cut(s)	86, 286
BseXI	GCAGC	5 cut(s)	295, 507, 529, 709, 862
BseYI	CCCAGC	2 cut(s)	511, 683
BsgI	GTGCAG	1 cut(s)	708
Bsh1236I	CGCG	1 cut(s)	491
Bsh1285I	CGRYCG	1 cut(s)	867
BshFI	GGCC	4 cut(s)	162, 236, 355, 404
BshNI	GGYRCC	1 cut(s)	429
BsiEI	CGRYCG	1 cut(s)	867
BsiSI	CCGG	2 cut(s)	159, 352
BslFI	GGGAC	1 cut(s)	405
BslI	CCNNNNNNNGG	5 cut(s)	165, 182, 232, 370, 684
BsmAI	GTCTC	1 cut(s)	298
BsmFI	GGGAC	1 cut(s)	405
BsnI	GGCC	4 cut(s)	162, 236, 355, 404
Bsp143I	GATC	1 cut(s)	637
BspACI	CCGC	2 cut(s)	494, 867
BspANI	GGCC	4 cut(s)	162, 236, 355, 404
BspCNI	CTCAG	2 cut(s)	489, 516
BspFNI	CGCG	1 cut(s)	491
BspLI	GGNNCC	2 cut(s)	421, 431
BspMAI	CTGCAG	3 cut(s)	313, 547, 907
BspT107I	GGYRCC	1 cut(s)	429
BsrFI	RCCGGY	1 cut(s)	351
BsrI	ACTGG	2 cut(s)	818, 844
BssAI	RCCGGY	1 cut(s)	351
BssECI	CCNNGG	3 cut(s)	164, 369, 678
BssMI	GATC	1 cut(s)	637
BssNI	GRCGYC	1 cut(s)	430
BssT1I	CCWWGG	1 cut(s)	678
Bst2UI	CCWGG	2 cut(s)	89, 233
Bst6I	CTCTTC	1 cut(s)	817
BstACI	GRCGYC	1 cut(s)	430
BstAPI	GCANNNNNTGC	1 cut(s)	875
BstBAI	YACGTR	1 cut(s)	606
BstC8I	GCNNGC	2 cut(s)	349, 353
BstDEI	CTNAG	2 cut(s)	497, 524
BstF5I	GGATG	6 cut(s)	261, 511, 571, 618, 640, 891
BstFNI	CGCG	1 cut(s)	491
BstH2I	RGCGCY	1 cut(s)	433
BstHHI	GCGC	2 cut(s)	432, 493
BstKTI	GATC	1 cut(s)	640
BstMAI	GTCTC	1 cut(s)	298
BstMBI	GATC	1 cut(s)	637
BstMCI	CGRYCG	1 cut(s)	867
BstMWI	GCNNNNNNNGC	5 cut(s)	396, 451, 517, 529, 875
BstNI	CCWGG	2 cut(s)	89, 233
BstNSI	RCATGY	2 cut(s)	105, 199
BstSCI	CCNGG	3 cut(s)	87, 157, 231
BstSFI	CTRYAG	3 cut(s)	309, 543, 903
BstUI	CGCG	1 cut(s)	491
BstV1I	GCAGC	5 cut(s)	295, 507, 529, 709, 862
BstXI	CCANNNNNNTGG	2 cut(s)	88, 839
BsuRI	GGCC	4 cut(s)	162, 236, 355, 404
BtsCI	GGATG	6 cut(s)	261, 511, 571, 618, 640, 891
BtsI	GCAGTG	2 cut(s)	170, 280
BtsIMutI	CAGTG	2 cut(s)	170, 280
Cac8I	GCNNGC	2 cut(s)	349, 353
CfoI	GCGC	2 cut(s)	432, 493
Cfr10I	RCCGGY	1 cut(s)	351
Cfr13I	GGNCC	3 cut(s)	161, 354, 419
Csp6I	GTAC	3 cut(s)	376, 450, 607
CviAII	CATG	5 cut(s)	102, 196, 256, 400, 434
CviQI	GTAC	3 cut(s)	376, 450, 607
DdeI	CTNAG	2 cut(s)	497, 524
DinI	GGCGCC	1 cut(s)	431
DpnI	GATC	1 cut(s)	639
DpnII	GATC	1 cut(s)	637
EaeI	YGGCCR	1 cut(s)	234
Eam1104I	CTCTTC	1 cut(s)	817
EarI	CTCTTC	1 cut(s)	817
Eco130I	CCWWGG	1 cut(s)	678
Eco47I	GGWCC	1 cut(s)	419
Eco57I	CTGAAG	1 cut(s)	440
EcoRII	CCWGG	2 cut(s)	87, 231
EcoT14I	CCWWGG	1 cut(s)	678
EgeI	GGCGCC	1 cut(s)	431
EheI	GGCGCC	1 cut(s)	431
ErhI	CCWWGG	1 cut(s)	678
FaeI	CATG	5 cut(s)	105, 199, 259, 403, 437
FaqI	GGGAC	1 cut(s)	405
FatI	CATG	5 cut(s)	101, 195, 255, 399, 433
FauNDI	CATATG	1 cut(s)	798
Fnu4HI	GCNGC	7 cut(s)	309, 494, 521, 543, 723, 876, 906
FokI	GGATG	6 cut(s)	248, 518, 578, 625, 647, 898
Fsp4HI	GCNGC	7 cut(s)	309, 494, 521, 543, 723, 876, 906
FspBI	CTAG	3 cut(s)	200, 269, 897
GlaI	GCGC	2 cut(s)	431, 492
GluI	GCNGC	7 cut(s)	309, 494, 521, 543, 723, 876, 906
GsaI	CCCAGC	2 cut(s)	515, 687
GsuI	CTGGAG	1 cut(s)	801
HaeII	RGCGCY	1 cut(s)	433
HaeIII	GGCC	4 cut(s)	162, 236, 355, 404
HapII	CCGG	2 cut(s)	159, 352
HhaI	GCGC	2 cut(s)	432, 493
Hin1I	GRCGYC	1 cut(s)	430
Hin1II	CATG	5 cut(s)	105, 199, 259, 403, 437
Hin6I	GCGC	2 cut(s)	430, 491
HinP1I	GCGC	2 cut(s)	430, 491
HincII	GTYRAC	1 cut(s)	808
HindII	GTYRAC	1 cut(s)	808
HinfI	GANTC	4 cut(s)	24, 61, 809, 889
HpaII	CCGG	2 cut(s)	159, 352
Hpy166II	GTNNAC	1 cut(s)	808
Hpy188I	TCNGA	5 cut(s)	185, 282, 373, 412, 703
Hpy188III	TCNNGA	2 cut(s)	332, 535
Hpy8I	GTNNAC	1 cut(s)	808
HpyAV	CCTTC	3 cut(s)	75, 545, 723
HpyCH4IV	ACGT	2 cut(s)	605, 671
HpyCH4V	TGCA	7 cut(s)	4, 311, 545, 725, 787, 878, 905
HpyF10VI	GCNNNNNNNGC	5 cut(s)	396, 451, 517, 529, 875
HpyF3I	CTNAG	2 cut(s)	497, 524
HpySE526I	ACGT	2 cut(s)	605, 671
Hsp92I	GRCGYC	1 cut(s)	430
Hsp92II	CATG	5 cut(s)	105, 199, 259, 403, 437
HspAI	GCGC	2 cut(s)	430, 491
KasI	GGCGCC	1 cut(s)	429
KroI	GCCGGC	1 cut(s)	351
KroNI	GCCGGC	1 cut(s)	353
Kzo9I	GATC	1 cut(s)	637
Lsp1109I	GCAGC	5 cut(s)	295, 507, 529, 709, 862
MaeI	CTAG	3 cut(s)	200, 269, 897
MaeII	ACGT	2 cut(s)	605, 671
MaeIII	GTNAC	2 cut(s)	111, 168
MalI	GATC	1 cut(s)	639
MboI	GATC	1 cut(s)	637
MboII	GAAGA	1 cut(s)	804
MlsI	TGGCCA	1 cut(s)	236
MluCI	AATT	4 cut(s)	340, 756, 782, 833
MluNI	TGGCCA	1 cut(s)	236
Mly113I	GGCGCC	1 cut(s)	430
MlyI	GAGTC	3 cut(s)	18, 70, 803
MmeI	TCCRAC	2 cut(s)	250, 305
Mox20I	TGGCCA	1 cut(s)	236
MroNI	GCCGGC	1 cut(s)	351
MscI	TGGCCA	1 cut(s)	236
MslI	CAYNNNNRTG	1 cut(s)	801
Msp20I	TGGCCA	1 cut(s)	236
MspA1I	CMGCKG	1 cut(s)	496
MspI	CCGG	2 cut(s)	159, 352
MspR9I	CCNGG	3 cut(s)	89, 159, 233
MvaI	CCWGG	2 cut(s)	89, 233
MvnI	CGCG	1 cut(s)	491
MwoI	GCNNNNNNNGC	5 cut(s)	396, 451, 517, 529, 875
NaeI	GCCGGC	1 cut(s)	353
NarI	GGCGCC	1 cut(s)	430
NciI	CCSGG	1 cut(s)	159
NdeI	CATATG	1 cut(s)	798
NdeII	GATC	1 cut(s)	637
NgoMIV	GCCGGC	1 cut(s)	351
NlaIII	CATG	5 cut(s)	105, 199, 259, 403, 437
NlaIV	GGNNCC	2 cut(s)	421, 431
NmuCI	GTSAC	2 cut(s)	111, 168
NspI	RCATGY	2 cut(s)	105, 199
PdiI	GCCGGC	1 cut(s)	353
PfeI	GAWTC	1 cut(s)	889
PflMI	CCANNNNNTGG	1 cut(s)	232
PkrI	GCNGC	7 cut(s)	310, 495, 522, 544, 724, 877, 907
PleI	GAGTC	3 cut(s)	18, 69, 803
PluTI	GGCGCC	1 cut(s)	433
PpsI	GAGTC	3 cut(s)	18, 69, 803
Ppu21I	YACGTR	1 cut(s)	606
Psp1406I	AACGTT	1 cut(s)	671
Psp6I	CCWGG	2 cut(s)	87, 231
PspFI	CCCAGC	2 cut(s)	511, 683
PspGI	CCWGG	2 cut(s)	87, 231
PspN4I	GGNNCC	2 cut(s)	421, 431
PspPI	GGNCC	3 cut(s)	161, 354, 419
PstI	CTGCAG	3 cut(s)	313, 547, 907
RsaI	GTAC	3 cut(s)	377, 451, 608
RsaNI	GTAC	3 cut(s)	376, 450, 607
RseI	CAYNNNNRTG	1 cut(s)	801
SatI	GCNGC	7 cut(s)	309, 494, 521, 543, 723, 876, 906
Sau3AI	GATC	1 cut(s)	637
Sau96I	GGNCC	3 cut(s)	161, 354, 419
SchI	GAGTC	3 cut(s)	18, 70, 803
ScrFI	CCNGG	3 cut(s)	89, 159, 233
SfcI	CTRYAG	3 cut(s)	309, 543, 903
SfoI	GGCGCC	1 cut(s)	431
SinI	GGWCC	1 cut(s)	419
SmiMI	CAYNNNNRTG	1 cut(s)	801
SmlI	CTYRAG	1 cut(s)	533
SmoI	CTYRAG	1 cut(s)	533
Sse9I	AATT	4 cut(s)	340, 756, 782, 833
SsiI	CCGC	2 cut(s)	494, 867
SspDI	GGCGCC	1 cut(s)	429
SspMI	CTAG	3 cut(s)	200, 269, 897
StyD4I	CCNGG	3 cut(s)	87, 157, 231
StyI	CCWWGG	1 cut(s)	678
TaiI	ACGT	2 cut(s)	608, 674
TaqI	TCGA	2 cut(s)	217, 858
TaqII	GACCGA	1 cut(s)	156
TasI	AATT	4 cut(s)	340, 756, 782, 833
TatI	WGTACW	1 cut(s)	375
TauI	GCSGC	1 cut(s)	496
TfiI	GAWTC	1 cut(s)	889
TscAI	CASTG	2 cut(s)	177, 280
TseFI	GTSAC	2 cut(s)	111, 168
TseI	GCWGC	6 cut(s)	308, 520, 542, 722, 875, 905
Tsp45I	GTSAC	2 cut(s)	111, 168
TspDTI	ATGAA	3 cut(s)	605, 815, 902
TspGWI	ACGGA	1 cut(s)	254
TspRI	CASTG	2 cut(s)	177, 280
Van91I	CCANNNNNTGG	1 cut(s)	232
VpaK11BI	GGWCC	1 cut(s)	419
XceI	RCATGY	2 cut(s)	105, 199
XspI	CTAG	3 cut(s)	200, 269, 897

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.