Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000282

Physical Location & Seq

Genomic Coordinates Reverse (-)

24878493 .. 24880139

Gene Structure 1647 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002061

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGAAGAATCTCCAAGAAGAGCTCCATAGTATGGTTGGTATGGACCGAATGGTGGAAGAATCTGATTTGCCCAAGCTGGATTACTTGAGTATGGTGGTGAAGGAGGGCTTCAAACTACACCCAGTTGCACCGTTACTAGTCCCACGTGAATCCATCGAGGACATTACATTAATCGATGGATATGACATACCCAAGAAATCGCGGACCATAGTAAACATCTGGAGGGTTGGAAGAGATCCTAATGTTTGGTCGGAAAATGTGGAGGAATTTTTTCCTGAAAGGTTCATGAACAGCAATATAGAGACCTCTGGGGACATGACTTTCAGCTCATCCCATTTGGGTCTGGGCGAAGAGGTTGTCCGGATACTAGGTTGCACAAAGGATAATGATAAGGTTACCATGATCAGTGCTCGATATGAAGGAACCATGATTACGCTCGATGAAGGAACCTTATCACTCGCACCATCAGTACAGCCATCAAGAATGAAGAAGCCTACGTCAATTGCTCATAAAAAATCACGAGCCTTATTAGATAAATTGGACCTAAAATTCCGCAACATTAACACAGATTGCTCGAAAAGCCATTGCCAACACCGAGGTGAACTAATCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

205

Amino Acids

23.17

Weight (kDa)

5.9

Isoelectric Point (pI)

42.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	2 - 102	3.3e-26	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000282)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12350 FvH4_5g12380 FvH4_5g12392 FvH4_5g12400 FvH4_5g12430
malus_domestica	MD06G1213300.v1.1 MD06G1213500.v1.1 MD06G1213700.v1.1 MD06G1213800.v1.1 MD06G1213900.v1.1 MD06G1214000.v1.1 MD06G1214400.v1.1 MD14G1224300.v1.1 MD14G1224400.v1.1 MD14G1224600.v1.1 MD14G1224700.v1.1 MD14G1224800.v1.1 MD14G1224900.v1.1 MD14G1225100.v1.1 MD14G1225400.v1.1
prunus_persica	Prupe.5G219700_v2.0.a1 Prupe.5G219800_v2.0.a1 Prupe.5G219900_v2.0.a1 Prupe.8G078500_v2.0.a1
pyrus_communis	pycom06g19100 pycom14g18590 pycom14g18600 pycom14g18610 pycom14g18660
rosa_chinensis	RchiOBHm_Chr0c12g0499591 RchiOBHm_Chr2g0140591 RchiOBHm_Chr2g0140631 RchiOBHm_Chr2g0140641 RchiOBHm_Chr2g0140651 RchiOBHm_Chr4g0417991 RchiOBHm_Chr4g0418001 RchiOBHm_Chr4g0418101 RchiOBHm_Chr4g0418111 RchiOBHm_Chr4g0418121 RchiOBHm_Chr6g0280191 RchiOBHm_Chr6g0280241 RchiOBHm_Chr6g0280251 RchiOBHm_Chr7g0185031 RchiOBHm_Chr7g0185051 RchiOBHm_Chr7g0185081 RchiOBHm_Chr7g0185091 RchiOBHm_Chr7g0185111 RchiOBHm_Chr7g0185131 RchiOBHm_Chr7g0185151 RchiOBHm_Chr7g0185161 RchiOBHm_Chr7g0185191 RchiOBHm_Chr7g0222431
rosa_laevigata	RLG00000002061 RLG00000004934 RLG00000004935 RLG00000004937 RLG00000013071 RLG00000013077 RLG00000019621 RLG00000019881 RLG00000019884 RLG00000019887 RLG00000019888 RLG00000028839
rosa_multiflora	Rmu_co8014370.1_g000001 Rmu_co8334683.1_g000001 Rmu_co8440383.1_g000001 Rmu_sc0002826.1_g000008 Rmu_sc0002826.1_g000009 Rmu_sc0002826.1_g000030 Rmu_sc0004483.1_g000005 Rmu_sc0004638.1_g000003 Rmu_sc0004638.1_g000004 Rmu_sc0005756.1_g000003 Rmu_sc0006493.1_g000023 Rmu_sc0006493.1_g000024 Rmu_sc0007137.1_g000017 Rmu_sc0008496.1_g000022 Rmu_sc0008769.1_g000003 Rmu_sc0013612.1_g000026 Rmu_sc0013864.1_g000001 Rmu_sc0013864.1_g000007 Rmu_sc0013864.1_g000008 Rmu_sc0030128.1_g000001 Rmu_sc0041660.1_g000001 Rmu_ssc0000289.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104640 Rroxscaffold_3G00253970 Rroxscaffold_3G00269170 Rroxscaffold_3G00269200 Rroxscaffold_3G00269210 Rroxscaffold_3G00269220 Rroxscaffold_3G00269230 Rroxscaffold_7G00188320
rosa_rugosa	Rorug01G0052300 Rorug05G0212000 Rorug06G0130700 Rorug06G0131100 Rorug06G0466200 Rorug06G0466300 Rorug06G0466400 Rorug06G0466500 Rorug06G0466700 Rorug07G0208500 Rorug07G0294600
rosa_samantha	Rh4AG137600 Rh6DG237300 Rh6DG237800 Rh7AG076200 Rh7AG076300 Rh7AG076500 Rh7AG076600 Rh7AG350700 Rh7BG070800 Rh7BG070900 Rh7BG071000 Rh7BG071100
rosa_wichuraiana	Rw6G020990 Rw6G021010 Rw7G005900 Rw7G005910 Rw7G005920 Rw7G005940 Rw7G005950 Rw7G005970 Rw7G029600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	31
AccII	CGCG	1 cut(s)	202
AccIII	TCCGGA	1 cut(s)	360
AciI	CCGC	2 cut(s)	202, 553
AclWI	GGATC	1 cut(s)	230
AcsI	RAATTY	2 cut(s)	266, 548
AcvI	CACGTG	1 cut(s)	146
AfaI	GTAC	1 cut(s)	471
AfiI	CCNNNNNNNGG	2 cut(s)	31, 52
AgsI	TTSAA	1 cut(s)	112
AhlI	ACTAGT	1 cut(s)	136
AleI	CACNNNNGTG	1 cut(s)	597
AluBI	AGCT	3 cut(s)	22, 76, 327
AluI	AGCT	3 cut(s)	22, 76, 327
Alw21I	GWGCWC	2 cut(s)	24, 412
Alw26I	GTCTC	1 cut(s)	296
AlwI	GGATC	1 cut(s)	230
Aor13HI	TCCGGA	1 cut(s)	360
ApoI	RAATTY	2 cut(s)	266, 548
ArsI	GACNNNNNNTTYG	2 cut(s)	342, 374
AseI	ATTAAT	1 cut(s)	170
Asp700I	GAANNNNTTC	1 cut(s)	270
AspS9I	GGNCC	3 cut(s)	43, 204, 541
AsuHPI	GGTGA	2 cut(s)	109, 611
AvaII	GGWCC	3 cut(s)	43, 204, 541
BanII	GRGCYC	1 cut(s)	24
BauI	CACGAG	1 cut(s)	519
BbrPI	CACGTG	1 cut(s)	146
Bbv12I	GWGCWC	2 cut(s)	24, 412
BccI	CCATC	4 cut(s)	161, 170, 472, 484
BciVI	GTATCC	1 cut(s)	357
BclI	TGATCA	1 cut(s)	402
BcoDI	GTCTC	1 cut(s)	296
BcuI	ACTAGT	1 cut(s)	136
BfaI	CTAG	2 cut(s)	137, 368
BfuI	GTATCC	1 cut(s)	357
Bme18I	GGWCC	3 cut(s)	43, 204, 541
BmgT120I	GGNCC	3 cut(s)	43, 204, 541
BmiI	GGNNCC	2 cut(s)	424, 448
BmrI	ACTGGG	1 cut(s)	116
BmuI	ACTGGG	1 cut(s)	116
BpmI	CTGGAG	1 cut(s)	241
BpuEI	CTTGAG	1 cut(s)	106
Bsa29I	ATCGAT	1 cut(s)	174
BsaAI	YACGTR	1 cut(s)	146
BsaI	GGTCTC	1 cut(s)	296
BsaJI	CCNNGG	1 cut(s)	595
BsaWI	WCCGGW	1 cut(s)	360
Bsc4I	CCNNNNNNNGG	2 cut(s)	31, 52
Bse1I	ACTGG	1 cut(s)	122
Bse3DI	GCAATG	1 cut(s)	583
BseAI	TCCGGA	1 cut(s)	360
BseCI	ATCGAT	1 cut(s)	174
BseDI	CCNNGG	1 cut(s)	595
BseGI	GGATG	1 cut(s)	329
BseLI	CCNNNNNNNGG	2 cut(s)	31, 52
BseMI	GCAATG	1 cut(s)	583
BseNI	ACTGG	1 cut(s)	122
Bsh1236I	CGCG	1 cut(s)	202
BshVI	ATCGAT	1 cut(s)	174
BsiHKAI	GWGCWC	2 cut(s)	24, 412
BsiSI	CCGG	1 cut(s)	361
BslFI	GGGAC	2 cut(s)	125, 326
BslI	CCNNNNNNNGG	2 cut(s)	31, 52
BsmAI	GTCTC	1 cut(s)	296
BsmFI	GGGAC	2 cut(s)	125, 326
Bso31I	GGTCTC	1 cut(s)	296
Bsp1286I	GDGCHC	2 cut(s)	24, 412
Bsp13I	TCCGGA	1 cut(s)	360
Bsp143I	GATC	2 cut(s)	235, 402
BspACI	CCGC	2 cut(s)	202, 553
BspDI	ATCGAT	1 cut(s)	174
BspEI	TCCGGA	1 cut(s)	360
BspFNI	CGCG	1 cut(s)	202
BspHI	TCATGA	1 cut(s)	285
BspLI	GGNNCC	2 cut(s)	424, 448
BspPI	GGATC	1 cut(s)	230
BspQI	GCTCTTC	1 cut(s)	12
BspTNI	GGTCTC	1 cut(s)	296
BsrDI	GCAATG	1 cut(s)	583
BsrI	ACTGG	1 cut(s)	122
BssECI	CCNNGG	1 cut(s)	595
BssMI	GATC	2 cut(s)	235, 402
BssSI	CACGAG	1 cut(s)	519
Bst2BI	CACGAG	1 cut(s)	519
Bst4CI	ACNGT	1 cut(s)	132
Bst6I	CTCTTC	3 cut(s)	12, 226, 345
BstBAI	YACGTR	1 cut(s)	146
BstEII	GGTNACC	1 cut(s)	394
BstF5I	GGATG	1 cut(s)	329
BstFNI	CGCG	1 cut(s)	202
BstKTI	GATC	2 cut(s)	238, 405
BstMAI	GTCTC	1 cut(s)	296
BstMBI	GATC	2 cut(s)	235, 402
BstMWI	GCNNNNNNNGC	1 cut(s)	579
BstPI	GGTNACC	1 cut(s)	394
BstUI	CGCG	1 cut(s)	202
BstX2I	RGATCY	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	235
Bsu15I	ATCGAT	1 cut(s)	174
BsuI	GTATCC	1 cut(s)	357
BsuTUI	ATCGAT	1 cut(s)	174
BtsCI	GGATG	1 cut(s)	329
BtsIMutI	CAGTG	1 cut(s)	412
CciI	TCATGA	1 cut(s)	285
Cfr13I	GGNCC	3 cut(s)	43, 204, 541
ClaI	ATCGAT	1 cut(s)	174
Csp6I	GTAC	1 cut(s)	470
CviAII	CATG	4 cut(s)	286, 316, 400, 427
CviJI	RGCY	8 cut(s)	22, 76, 108, 327, 475, 493, 524, 582
CviKI_1	RGCY	8 cut(s)	22, 76, 108, 327, 475, 493, 524, 582
CviQI	GTAC	1 cut(s)	470
DpnI	GATC	2 cut(s)	237, 404
DpnII	GATC	2 cut(s)	235, 402
Eam1104I	CTCTTC	3 cut(s)	12, 226, 345
EarI	CTCTTC	3 cut(s)	12, 226, 345
Ecl136II	GAGCTC	1 cut(s)	22
Eco24I	GRGCYC	1 cut(s)	24
Eco31I	GGTCTC	1 cut(s)	296
Eco47I	GGWCC	3 cut(s)	43, 204, 541
Eco53kI	GAGCTC	1 cut(s)	22
Eco72I	CACGTG	1 cut(s)	146
Eco91I	GGTNACC	1 cut(s)	394
EcoICRI	GAGCTC	1 cut(s)	22
EcoO65I	GGTNACC	1 cut(s)	394
EcoT38I	GRGCYC	1 cut(s)	24
FaeI	CATG	4 cut(s)	289, 319, 403, 430
FalI	AAGNNNNNCTT	2 cut(s)	92, 124
FaqI	GGGAC	2 cut(s)	125, 326
FatI	CATG	4 cut(s)	285, 315, 399, 426
FbaI	TGATCA	1 cut(s)	402
FokI	GGATG	1 cut(s)	316
FriOI	GRGCYC	1 cut(s)	24
FspBI	CTAG	2 cut(s)	137, 368
GsuI	CTGGAG	1 cut(s)	241
HapII	CCGG	1 cut(s)	361
Hin1II	CATG	4 cut(s)	289, 319, 403, 430
HinfI	GANTC	3 cut(s)	7, 59, 149
HpaII	CCGG	1 cut(s)	361
HphI	GGTGA	2 cut(s)	109, 611
Hpy166II	GTNNAC	2 cut(s)	214, 602
Hpy188I	TCNGA	2 cut(s)	64, 253
Hpy188III	TCNNGA	6 cut(s)	220, 275, 286, 361, 480, 519
Hpy8I	GTNNAC	2 cut(s)	214, 602
HpyAV	CCTTC	3 cut(s)	94, 413, 437
HpyCH4III	ACNGT	1 cut(s)	132
HpyCH4IV	ACGT	2 cut(s)	145, 497
HpyCH4V	TGCA	2 cut(s)	128, 375
HpyF10VI	GCNNNNNNNGC	1 cut(s)	579
HpySE526I	ACGT	2 cut(s)	145, 497
Hsp92II	CATG	4 cut(s)	289, 319, 403, 430
Kpn2I	TCCGGA	1 cut(s)	360
Ksp22I	TGATCA	1 cut(s)	402
Kzo9I	GATC	2 cut(s)	235, 402
LguI	GCTCTTC	1 cut(s)	12
LmnI	GCTCC	1 cut(s)	27
LpnPI	CCDG	7 cut(s)	62, 135, 205, 288, 294, 329, 374
MaeI	CTAG	2 cut(s)	137, 368
MaeII	ACGT	2 cut(s)	145, 497
MaeIII	GTNAC	2 cut(s)	132, 394
MalI	GATC	2 cut(s)	237, 404
MboI	GATC	2 cut(s)	235, 402
MboII	GAAGA	6 cut(s)	16, 29, 68, 243, 362, 499
MfeI	CAATTG	1 cut(s)	501
MflI	RGATCY	1 cut(s)	235
MhlI	GDGCHC	2 cut(s)	24, 412
MluCI	AATT	4 cut(s)	266, 501, 536, 548
MmeI	TCCRAC	2 cut(s)	208, 231
MnlI	CCTC	7 cut(s)	97, 151, 216, 256, 316, 346, 590
MroI	TCCGGA	1 cut(s)	360
MroXI	GAANNNNTTC	1 cut(s)	270
MseI	TTAA	2 cut(s)	170, 561
MslI	CAYNNNNRTG	1 cut(s)	597
MspI	CCGG	1 cut(s)	361
MunI	CAATTG	1 cut(s)	501
MvnI	CGCG	1 cut(s)	202
MwoI	GCNNNNNNNGC	1 cut(s)	579
NdeII	GATC	2 cut(s)	235, 402
NlaIII	CATG	4 cut(s)	289, 319, 403, 430
NlaIV	GGNNCC	2 cut(s)	424, 448
OliI	CACNNNNGTG	1 cut(s)	597
PagI	TCATGA	1 cut(s)	285
PciSI	GCTCTTC	1 cut(s)	12
PdmI	GAANNNNTTC	1 cut(s)	270
PfeI	GAWTC	3 cut(s)	7, 59, 149
PflMI	CCANNNNNTGG	1 cut(s)	31
PmaCI	CACGTG	1 cut(s)	146
PmlI	CACGTG	1 cut(s)	146
Ppu21I	YACGTR	1 cut(s)	146
PshBI	ATTAAT	1 cut(s)	170
Psp124BI	GAGCTC	1 cut(s)	24
PspCI	CACGTG	1 cut(s)	146
PspEI	GGTNACC	1 cut(s)	394
PspN4I	GGNNCC	2 cut(s)	424, 448
PspPI	GGNCC	3 cut(s)	43, 204, 541
PsrI	GAACNNNNNNTAC	2 cut(s)	415, 447
PsuI	RGATCY	1 cut(s)	235
RsaI	GTAC	1 cut(s)	471
RsaNI	GTAC	1 cut(s)	470
RseI	CAYNNNNRTG	1 cut(s)	597
SacI	GAGCTC	1 cut(s)	24
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	2 cut(s)	170, 561
Sau3AI	GATC	2 cut(s)	235, 402
Sau96I	GGNCC	3 cut(s)	43, 204, 541
SduI	GDGCHC	2 cut(s)	24, 412
SinI	GGWCC	3 cut(s)	43, 204, 541
SmiMI	CAYNNNNRTG	1 cut(s)	597
SmlI	CTYRAG	1 cut(s)	85
SmoI	CTYRAG	1 cut(s)	85
SpeI	ACTAGT	1 cut(s)	136
Sse9I	AATT	4 cut(s)	266, 501, 536, 548
SsiI	CCGC	2 cut(s)	202, 553
SspMI	CTAG	2 cut(s)	137, 368
SstI	GAGCTC	1 cut(s)	24
TaaI	ACNGT	1 cut(s)	132
TaiI	ACGT	2 cut(s)	148, 500
TaqI	TCGA	5 cut(s)	156, 174, 412, 438, 575
TaqII	GACCGA	1 cut(s)	60
TasI	AATT	4 cut(s)	266, 501, 536, 548
TatI	WGTACW	1 cut(s)	469
TfiI	GAWTC	3 cut(s)	7, 59, 149
Tru1I	TTAA	2 cut(s)	170, 561
Tru9I	TTAA	2 cut(s)	170, 561
TscAI	CASTG	1 cut(s)	412
TspDTI	ATGAA	6 cut(s)	17, 274, 302, 432, 456, 500
TspRI	CASTG	1 cut(s)	412
Van91I	CCANNNNNTGG	1 cut(s)	31
VpaK11BI	GGWCC	3 cut(s)	43, 204, 541
VspI	ATTAAT	1 cut(s)	170
XapI	RAATTY	2 cut(s)	266, 548
XcmI	CCANNNNNNNNNTGG	1 cut(s)	32
XmnI	GAANNNNTTC	1 cut(s)	270
XspI	CTAG	2 cut(s)	137, 368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.