RchiOBHm_Chr7g0185051

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000282
Physical Location & Seq
Forward (+)
5318836 .. 5321142
2307 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16512

Sequence Viewer

Length: 858 bp
ATGTCCATTCGTCTAGGCAATGTTCCTACCATAATAGTCTCCTCCCCAAAAGCCGCAGAACAATTCCTCAAAGCTCACGACACTAATTTCGCCAGCCGACCCAAAATCCAAGCCTCAGAGTACATACCCTACGACACAAAGAGCATGGCCGCCTTTTCCGAATATGGTCCATATTGGAGCCATGTAAGGAAGCTCTGTATGCAACAACATTTTTGTCCCGCGACAATGGAGGGTTTCACGCCGCTGAGAAAGGAGGAGCTGGAGCGCTGTGAGAATATTCGGGTGATGAAAGAGGACATAACGTATAAGATGGTGTTGGGTTGTAAAAGGGATGATAGGTTTGATTTGAAAGCCGTTATTGAGGAAACGTTTTACTTGGCAGGGGCCTTCAATATATCAGATTTTGTTCCTTCCCTTTCTGCACTTGATATATATTCAGCTCGAGACTACACCCAGTTCGTTGCACTGTTTCTTATCCCACGTGAATCCATCGAGGACATTACAATGGATGGATATGGCATACCCAAGAAGTCGCGAATCATAGTTAATTATTGGAGCATTGGAAGAGATCCTAATGGTTGGTCCGAAAATGTTGAGGAATTTTATCCTGAAAGGTTCATGAACAGCAATATAAACCTCTGGGGACATGACTTTCAGCTTATCCCATTTGGGTATGGCCGAAGGGGGTGTCCGGGTCTGCAATTAGGGCTAACCACAATTCAGCTAGTTGTGGCACAGCCAGTGCCCTACTTTAACTGGGAGCTCCCCACTGGCATGCTACCTCAGGACTTGGACATGTCTGAGAATTTGGCATATCAATGTCAAAAGCCAAGGCCGGCCCAGAGGGCTGCTACCTGA

Protein Analysis

285

Amino Acids

32.73

Weight (kDa)

5.68

Isoelectric Point (pI)

45.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 2 - 88 2.3e-06 Cytochrome P450
p450 PF00067 154 - 267 5.2e-27 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000282)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g12350 FvH4_5g12380 FvH4_5g12392 FvH4_5g12400 FvH4_5g12430
malus_domestica MD06G1213300.v1.1 MD06G1213500.v1.1 MD06G1213700.v1.1 MD06G1213800.v1.1 MD06G1213900.v1.1 MD06G1214000.v1.1 MD06G1214400.v1.1 MD14G1224300.v1.1 MD14G1224400.v1.1 MD14G1224600.v1.1 MD14G1224700.v1.1 MD14G1224800.v1.1 MD14G1224900.v1.1 MD14G1225100.v1.1 MD14G1225400.v1.1
prunus_persica Prupe.5G219700_v2.0.a1 Prupe.5G219800_v2.0.a1 Prupe.5G219900_v2.0.a1 Prupe.8G078500_v2.0.a1
pyrus_communis pycom06g19100 pycom14g18590 pycom14g18600 pycom14g18610 pycom14g18660
rosa_chinensis RchiOBHm_Chr0c12g0499591 RchiOBHm_Chr2g0140591 RchiOBHm_Chr2g0140631 RchiOBHm_Chr2g0140641 RchiOBHm_Chr2g0140651 RchiOBHm_Chr4g0417991 RchiOBHm_Chr4g0418001 RchiOBHm_Chr4g0418101 RchiOBHm_Chr4g0418111 RchiOBHm_Chr4g0418121 RchiOBHm_Chr6g0280191 RchiOBHm_Chr6g0280241 RchiOBHm_Chr6g0280251 RchiOBHm_Chr7g0185031 RchiOBHm_Chr7g0185051 RchiOBHm_Chr7g0185081 RchiOBHm_Chr7g0185091 RchiOBHm_Chr7g0185111 RchiOBHm_Chr7g0185131 RchiOBHm_Chr7g0185151 RchiOBHm_Chr7g0185161 RchiOBHm_Chr7g0185191 RchiOBHm_Chr7g0222431
rosa_laevigata RLG00000002061 RLG00000004934 RLG00000004935 RLG00000004937 RLG00000013071 RLG00000013077 RLG00000019621 RLG00000019881 RLG00000019884 RLG00000019887 RLG00000019888 RLG00000028839
rosa_multiflora Rmu_co8014370.1_g000001 Rmu_co8334683.1_g000001 Rmu_co8440383.1_g000001 Rmu_sc0002826.1_g000008 Rmu_sc0002826.1_g000009 Rmu_sc0002826.1_g000030 Rmu_sc0004483.1_g000005 Rmu_sc0004638.1_g000003 Rmu_sc0004638.1_g000004 Rmu_sc0005756.1_g000003 Rmu_sc0006493.1_g000023 Rmu_sc0006493.1_g000024 Rmu_sc0007137.1_g000017 Rmu_sc0008496.1_g000022 Rmu_sc0008769.1_g000003 Rmu_sc0013612.1_g000026 Rmu_sc0013864.1_g000001 Rmu_sc0013864.1_g000007 Rmu_sc0013864.1_g000008 Rmu_sc0030128.1_g000001 Rmu_sc0041660.1_g000001 Rmu_ssc0000289.1_g000001
rosa_roxburghii Rroxscaffold_2G00104640 Rroxscaffold_3G00253970 Rroxscaffold_3G00269170 Rroxscaffold_3G00269200 Rroxscaffold_3G00269210 Rroxscaffold_3G00269220 Rroxscaffold_3G00269230 Rroxscaffold_7G00188320
rosa_rugosa Rorug01G0052300 Rorug05G0212000 Rorug06G0130700 Rorug06G0131100 Rorug06G0466200 Rorug06G0466300 Rorug06G0466400 Rorug06G0466500 Rorug06G0466700 Rorug07G0208500 Rorug07G0294600
rosa_samantha Rh4AG137600 Rh6DG237300 Rh6DG237800 Rh7AG076200 Rh7AG076300 Rh7AG076500 Rh7AG076600 Rh7AG350700 Rh7BG070800 Rh7BG070900 Rh7BG071000 Rh7BG071100
rosa_wichuraiana Rw6G020990 Rw6G021010 Rw7G005900 Rw7G005910 Rw7G005920 Rw7G005940 Rw7G005950 Rw7G005970 Rw7G029600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 221, 535
AciI CCGC 4 cut(s) 54, 150, 219, 242
AclI AACGTT 1 cut(s) 368
AclWI GGATC 1 cut(s) 563
AcoI YGGCCR 2 cut(s) 147, 676
AcsI RAATTY 2 cut(s) 599, 805
AcvI CACGTG 1 cut(s) 482
AfaI GTAC 1 cut(s) 122
AfeI AGCGCT 1 cut(s) 266
AflIII ACRYGT 1 cut(s) 795
AgsI TTSAA 2 cut(s) 349, 391
AluBI AGCT 7 cut(s) 74, 193, 259, 440, 658, 724, 763
AluI AGCT 7 cut(s) 74, 193, 259, 440, 658, 724, 763
Alw21I GWGCWC 1 cut(s) 765
Alw26I GTCTC 2 cut(s) 43, 438
AlwI GGATC 1 cut(s) 563
Ama87I CYCGRG 1 cut(s) 441
Aor51HI AGCGCT 1 cut(s) 266
AoxI GGCC 5 cut(s) 147, 384, 676, 833, 837
ApeKI GCWGC 1 cut(s) 848
ApoI RAATTY 2 cut(s) 599, 805
ArsI GACNNNNNNTTYG 4 cut(s) 71, 103, 673, 705
AspLEI GCGC 1 cut(s) 267
AspS9I GGNCC 4 cut(s) 167, 384, 582, 838
AsuC2I CCSGG 1 cut(s) 693
AsuHPI GGTGA 1 cut(s) 295
AvaI CYCGRG 1 cut(s) 441
AvaII GGWCC 2 cut(s) 167, 582
AxyI CCTNAGG 1 cut(s) 783
BaeGI GKGCMC 1 cut(s) 747
BanII GRGCYC 1 cut(s) 765
BbrPI CACGTG 1 cut(s) 482
Bbv12I GWGCWC 1 cut(s) 765
BbvI GCAGC 1 cut(s) 835
BccI CCATC 3 cut(s) 304, 497, 503
BceAI ACGGC 1 cut(s) 338
BcnI CCSGG 1 cut(s) 693
BcoDI GTCTC 2 cut(s) 43, 438
BfaI CTAG 2 cut(s) 14, 725
BfoI RGCGCY 1 cut(s) 268
BglI GCCNNNNNGGC 1 cut(s) 845
BisI GCNGC 4 cut(s) 54, 150, 242, 849
BlsI GCNGC 4 cut(s) 55, 151, 243, 850
Bme1390I CCNGG 1 cut(s) 693
Bme18I GGWCC 2 cut(s) 167, 582
BmeT110I CYCGRG 1 cut(s) 441
BmgT120I GGNCC 4 cut(s) 167, 384, 582, 838
BmiI GGNNCC 2 cut(s) 179, 385
BmrFI CCNGG 1 cut(s) 693
BmrI ACTGGG 2 cut(s) 448, 766
BmuI ACTGGG 2 cut(s) 448, 766
BpmI CTGGAG 1 cut(s) 281
BpuMI CCSGG 1 cut(s) 693
BsaAI YACGTR 1 cut(s) 482
BsaJI CCNNGG 1 cut(s) 830
Bse118I RCCGGY 1 cut(s) 835
Bse1I ACTGG 4 cut(s) 454, 740, 761, 775
Bse21I CCTNAGG 1 cut(s) 783
Bse3DI GCAATG 1 cut(s) 25
BseDI CCNNGG 1 cut(s) 830
BseGI GGATG 2 cut(s) 337, 514
BseMI GCAATG 1 cut(s) 25
BseMII CTCAG 4 cut(s) 129, 236, 792, 797
BseNI ACTGG 4 cut(s) 454, 740, 761, 775
BseRI GAGGAG 2 cut(s) 31, 269
BseSI GKGCMC 1 cut(s) 747
BseXI GCAGC 1 cut(s) 835
BsgI GTGCAG 1 cut(s) 405
Bsh1236I CGCG 2 cut(s) 221, 535
BshFI GGCC 5 cut(s) 149, 386, 678, 835, 839
BsiHKAI GWGCWC 1 cut(s) 765
BsiHKCI CYCGRG 1 cut(s) 441
BsiSI CCGG 2 cut(s) 692, 836
BslFI GGGAC 2 cut(s) 201, 657
BsmAI GTCTC 2 cut(s) 43, 438
BsmFI GGGAC 2 cut(s) 201, 657
BsnI GGCC 5 cut(s) 149, 386, 678, 835, 839
BsoBI CYCGRG 1 cut(s) 441
Bsp1286I GDGCHC 2 cut(s) 747, 765
Bsp143I GATC 1 cut(s) 568
Bsp68I TCGCGA 1 cut(s) 535
BspACI CCGC 4 cut(s) 54, 150, 219, 242
BspANI GGCC 5 cut(s) 149, 386, 678, 835, 839
BspCNI CTCAG 4 cut(s) 128, 237, 793, 796
BspFNI CGCG 2 cut(s) 221, 535
BspHI TCATGA 1 cut(s) 618
BspLI GGNNCC 2 cut(s) 179, 385
BspPI GGATC 1 cut(s) 563
BsrDI GCAATG 1 cut(s) 25
BsrFI RCCGGY 1 cut(s) 835
BsrI ACTGG 4 cut(s) 454, 740, 761, 775
BssAI RCCGGY 1 cut(s) 835
BssECI CCNNGG 1 cut(s) 830
BssMI GATC 1 cut(s) 568
BssT1I CCWWGG 1 cut(s) 830
Bst4CI ACNGT 1 cut(s) 468
Bst6I CTCTTC 1 cut(s) 559
BstBAI YACGTR 1 cut(s) 482
BstC8I GCNNGC 3 cut(s) 94, 776, 837
BstDEI CTNAG 4 cut(s) 115, 245, 783, 801
BstF5I GGATG 2 cut(s) 337, 514
BstFNI CGCG 2 cut(s) 221, 535
BstH2I RGCGCY 1 cut(s) 268
BstHHI GCGC 1 cut(s) 267
BstKTI GATC 1 cut(s) 571
BstMAI GTCTC 2 cut(s) 43, 438
BstMBI GATC 1 cut(s) 568
BstMWI GCNNNNNNNGC 3 cut(s) 199, 706, 845
BstNSI RCATGY 2 cut(s) 778, 799
BstSCI CCNGG 1 cut(s) 691
BstSLI GKGCMC 1 cut(s) 747
BstUI CGCG 2 cut(s) 221, 535
BstV1I GCAGC 1 cut(s) 835
BstX2I RGATCY 1 cut(s) 568
BstYI RGATCY 1 cut(s) 568
Bsu36I CCTNAGG 1 cut(s) 783
BsuRI GGCC 5 cut(s) 149, 386, 678, 835, 839
BtsCI GGATG 2 cut(s) 337, 514
BtsIMutI CAGTG 3 cut(s) 464, 747, 768
BtuMI TCGCGA 1 cut(s) 535
Cac8I GCNNGC 3 cut(s) 94, 776, 837
CciI TCATGA 1 cut(s) 618
CfoI GCGC 1 cut(s) 267
Cfr10I RCCGGY 1 cut(s) 835
Cfr13I GGNCC 4 cut(s) 167, 384, 582, 838
Csp6I GTAC 1 cut(s) 121
CviAII CATG 6 cut(s) 145, 182, 619, 647, 775, 796
CviQI GTAC 1 cut(s) 121
DdeI CTNAG 4 cut(s) 115, 245, 783, 801
DpnI GATC 1 cut(s) 570
DpnII GATC 1 cut(s) 568
EaeI YGGCCR 2 cut(s) 147, 676
Eam1104I CTCTTC 1 cut(s) 559
EarI CTCTTC 1 cut(s) 559
Ecl136II GAGCTC 1 cut(s) 763
Eco130I CCWWGG 1 cut(s) 830
Eco24I GRGCYC 1 cut(s) 765
Eco47I GGWCC 2 cut(s) 167, 582
Eco47III AGCGCT 1 cut(s) 266
Eco53kI GAGCTC 1 cut(s) 763
Eco72I CACGTG 1 cut(s) 482
Eco81I CCTNAGG 1 cut(s) 783
Eco88I CYCGRG 1 cut(s) 441
EcoICRI GAGCTC 1 cut(s) 763
EcoO109I RGGNCCY 1 cut(s) 384
EcoT14I CCWWGG 1 cut(s) 830
EcoT38I GRGCYC 1 cut(s) 765
ErhI CCWWGG 1 cut(s) 830
FaeI CATG 6 cut(s) 148, 185, 622, 650, 778, 799
FaqI GGGAC 2 cut(s) 201, 657
FatI CATG 6 cut(s) 144, 181, 618, 646, 774, 795
FauI CCCGC 1 cut(s) 226
Fnu4HI GCNGC 4 cut(s) 54, 150, 242, 849
FokI GGATG 2 cut(s) 344, 521
FriOI GRGCYC 1 cut(s) 765
FseI GGCCGGCC 1 cut(s) 839
Fsp4HI GCNGC 4 cut(s) 54, 150, 242, 849
FspBI CTAG 2 cut(s) 14, 725
GlaI GCGC 1 cut(s) 266
GluI GCNGC 4 cut(s) 54, 150, 242, 849
GsuI CTGGAG 1 cut(s) 281
HaeII RGCGCY 1 cut(s) 268
HaeIII GGCC 5 cut(s) 149, 386, 678, 835, 839
HapII CCGG 2 cut(s) 692, 836
HhaI GCGC 1 cut(s) 267
Hin1II CATG 6 cut(s) 148, 185, 622, 650, 778, 799
Hin6I GCGC 1 cut(s) 265
HinP1I GCGC 1 cut(s) 265
HinfI GANTC 2 cut(s) 485, 537
HpaII CCGG 2 cut(s) 692, 836
HphI GGTGA 1 cut(s) 295
Hpy188I TCNGA 5 cut(s) 118, 160, 400, 586, 802
Hpy188III TCNNGA 6 cut(s) 77, 443, 534, 608, 619, 785
HpyAV CCTTC 3 cut(s) 397, 420, 675
HpyCH4III ACNGT 1 cut(s) 468
HpyCH4IV ACGT 3 cut(s) 302, 368, 481
HpyCH4V TGCA 4 cut(s) 202, 422, 464, 700
HpyF10VI GCNNNNNNNGC 3 cut(s) 199, 706, 845
HpyF3I CTNAG 4 cut(s) 115, 245, 783, 801
HpySE526I ACGT 3 cut(s) 302, 368, 481
Hsp92II CATG 6 cut(s) 148, 185, 622, 650, 778, 799
HspAI GCGC 1 cut(s) 265
KroI GCCGGC 1 cut(s) 835
KroNI GCCGGC 1 cut(s) 837
Kzo9I GATC 1 cut(s) 568
LmnI GCTCC 6 cut(s) 177, 256, 262, 555, 760, 768
Lsp1109I GCAGC 1 cut(s) 835
MaeI CTAG 2 cut(s) 14, 725
MaeII ACGT 3 cut(s) 302, 368, 481
MalI GATC 1 cut(s) 570
MboI GATC 1 cut(s) 568
MboII GAAGA 1 cut(s) 576
MflI RGATCY 1 cut(s) 568
MhlI GDGCHC 2 cut(s) 747, 765
MluCI AATT 7 cut(s) 62, 85, 547, 599, 701, 717, 805
MroNI GCCGGC 1 cut(s) 835
MseI TTAA 2 cut(s) 546, 753
MslI CAYNNNNRTG 3 cut(s) 503, 773, 817
MspA1I CMGCKG 1 cut(s) 244
MspI CCGG 2 cut(s) 692, 836
MspR9I CCNGG 1 cut(s) 693
MvnI CGCG 2 cut(s) 221, 535
MwoI GCNNNNNNNGC 3 cut(s) 199, 706, 845
NaeI GCCGGC 1 cut(s) 837
NciI CCSGG 1 cut(s) 693
NdeII GATC 1 cut(s) 568
NgoMIV GCCGGC 1 cut(s) 835
NlaIII CATG 6 cut(s) 148, 185, 622, 650, 778, 799
NlaIV GGNNCC 2 cut(s) 179, 385
NruI TCGCGA 1 cut(s) 535
NspI RCATGY 2 cut(s) 778, 799
PaeI GCATGC 1 cut(s) 778
PaeR7I CTCGAG 1 cut(s) 441
PagI TCATGA 1 cut(s) 618
PciI ACATGT 1 cut(s) 795
PdiI GCCGGC 1 cut(s) 837
PfeI GAWTC 2 cut(s) 485, 537
PkrI GCNGC 4 cut(s) 55, 151, 243, 850
PmaCI CACGTG 1 cut(s) 482
PmlI CACGTG 1 cut(s) 482
Ppu21I YACGTR 1 cut(s) 482
PscI ACATGT 1 cut(s) 795
Psp124BI GAGCTC 1 cut(s) 765
Psp1406I AACGTT 1 cut(s) 368
PspCI CACGTG 1 cut(s) 482
PspN4I GGNNCC 2 cut(s) 179, 385
PspPI GGNCC 4 cut(s) 167, 384, 582, 838
PsuI RGATCY 1 cut(s) 568
RigI GGCCGGCC 1 cut(s) 839
RruI TCGCGA 1 cut(s) 535
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
RseI CAYNNNNRTG 3 cut(s) 503, 773, 817
SacI GAGCTC 1 cut(s) 765
SaqAI TTAA 2 cut(s) 546, 753
SatI GCNGC 4 cut(s) 54, 150, 242, 849
Sau3AI GATC 1 cut(s) 568
Sau96I GGNCC 4 cut(s) 167, 384, 582, 838
ScrFI CCNGG 1 cut(s) 693
SduI GDGCHC 2 cut(s) 747, 765
Sfr274I CTCGAG 1 cut(s) 441
SinI GGWCC 2 cut(s) 167, 582
SlaI CTCGAG 1 cut(s) 441
SmiMI CAYNNNNRTG 3 cut(s) 503, 773, 817
SmlI CTYRAG 1 cut(s) 441
SmoI CTYRAG 1 cut(s) 441
SphI GCATGC 1 cut(s) 778
Sse9I AATT 7 cut(s) 62, 85, 547, 599, 701, 717, 805
SsiI CCGC 4 cut(s) 54, 150, 219, 242
SspI AATATT 1 cut(s) 277
SspMI CTAG 2 cut(s) 14, 725
SstI GAGCTC 1 cut(s) 765
StyD4I CCNGG 1 cut(s) 691
StyI CCWWGG 1 cut(s) 830
TaaI ACNGT 1 cut(s) 468
TaiI ACGT 3 cut(s) 305, 371, 484
TaqI TCGA 2 cut(s) 442, 492
TasI AATT 7 cut(s) 62, 85, 547, 599, 701, 717, 805
TatI WGTACW 1 cut(s) 120
TauI GCSGC 3 cut(s) 56, 152, 244
TfiI GAWTC 2 cut(s) 485, 537
Tru1I TTAA 2 cut(s) 546, 753
Tru9I TTAA 2 cut(s) 546, 753
TscAI CASTG 3 cut(s) 471, 747, 775
TseI GCWGC 1 cut(s) 848
TspDTI ATGAA 3 cut(s) 302, 607, 635
TspRI CASTG 3 cut(s) 471, 747, 775
VpaK11BI GGWCC 2 cut(s) 167, 582
XapI RAATTY 2 cut(s) 599, 805
XceI RCATGY 2 cut(s) 778, 799
XhoI CTCGAG 1 cut(s) 441
XspI CTAG 2 cut(s) 14, 725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.