Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000282

Physical Location & Seq

Genomic Coordinates Forward (+)

4829239 .. 4829658

Gene Structure 420 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG071000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGAAGAATCTCCAAGAAGAGCTCCAAACTGTGGTTGGCATGGACCGAATGGTGGAAGAGTCTGATTTGCCAAAGTTGGATTACTTGAGTATGGTGGTCAAGGAGAGCTCGAGACTACACCCAGTGGCACCATTACTAGTTCCACATGAATTTATCGAGGACATTACGATCGATGGATATGGCATACCCAAGAAGTCGCGAATCATAGTTAATTATTGGAGCATTGGAAGAGATCCTAATGTTTGGTCGGAAAATGTTGAGGAATTTTATCCTGAAAGGTTCATGAACAGCAATATAGACCTCCGAGGACATGACTTTCAGCTCATCCCATTTGGGTCTGGCCGAAGATGGTGCCTGGGTCTGCAATTAGGGCTAACCACAGTTCGGCTAGTTGTGGCACAGCTAGTGCACTGCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

139

Amino Acids

16.07

Weight (kDa)

5.32

Isoelectric Point (pI)

56.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	2 - 139	1.2e-43	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000282)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12350 FvH4_5g12380 FvH4_5g12392 FvH4_5g12400 FvH4_5g12430
malus_domestica	MD06G1213300.v1.1 MD06G1213500.v1.1 MD06G1213700.v1.1 MD06G1213800.v1.1 MD06G1213900.v1.1 MD06G1214000.v1.1 MD06G1214400.v1.1 MD14G1224300.v1.1 MD14G1224400.v1.1 MD14G1224600.v1.1 MD14G1224700.v1.1 MD14G1224800.v1.1 MD14G1224900.v1.1 MD14G1225100.v1.1 MD14G1225400.v1.1
prunus_persica	Prupe.5G219700_v2.0.a1 Prupe.5G219800_v2.0.a1 Prupe.5G219900_v2.0.a1 Prupe.8G078500_v2.0.a1
pyrus_communis	pycom06g19100 pycom14g18590 pycom14g18600 pycom14g18610 pycom14g18660
rosa_chinensis	RchiOBHm_Chr0c12g0499591 RchiOBHm_Chr2g0140591 RchiOBHm_Chr2g0140631 RchiOBHm_Chr2g0140641 RchiOBHm_Chr2g0140651 RchiOBHm_Chr4g0417991 RchiOBHm_Chr4g0418001 RchiOBHm_Chr4g0418101 RchiOBHm_Chr4g0418111 RchiOBHm_Chr4g0418121 RchiOBHm_Chr6g0280191 RchiOBHm_Chr6g0280241 RchiOBHm_Chr6g0280251 RchiOBHm_Chr7g0185031 RchiOBHm_Chr7g0185051 RchiOBHm_Chr7g0185081 RchiOBHm_Chr7g0185091 RchiOBHm_Chr7g0185111 RchiOBHm_Chr7g0185131 RchiOBHm_Chr7g0185151 RchiOBHm_Chr7g0185161 RchiOBHm_Chr7g0185191 RchiOBHm_Chr7g0222431
rosa_laevigata	RLG00000002061 RLG00000004934 RLG00000004935 RLG00000004937 RLG00000013071 RLG00000013077 RLG00000019621 RLG00000019881 RLG00000019884 RLG00000019887 RLG00000019888 RLG00000028839
rosa_multiflora	Rmu_co8014370.1_g000001 Rmu_co8334683.1_g000001 Rmu_co8440383.1_g000001 Rmu_sc0002826.1_g000008 Rmu_sc0002826.1_g000009 Rmu_sc0002826.1_g000030 Rmu_sc0004483.1_g000005 Rmu_sc0004638.1_g000003 Rmu_sc0004638.1_g000004 Rmu_sc0005756.1_g000003 Rmu_sc0006493.1_g000023 Rmu_sc0006493.1_g000024 Rmu_sc0007137.1_g000017 Rmu_sc0008496.1_g000022 Rmu_sc0008769.1_g000003 Rmu_sc0013612.1_g000026 Rmu_sc0013864.1_g000001 Rmu_sc0013864.1_g000007 Rmu_sc0013864.1_g000008 Rmu_sc0030128.1_g000001 Rmu_sc0041660.1_g000001 Rmu_ssc0000289.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104640 Rroxscaffold_3G00253970 Rroxscaffold_3G00269170 Rroxscaffold_3G00269200 Rroxscaffold_3G00269210 Rroxscaffold_3G00269220 Rroxscaffold_3G00269230 Rroxscaffold_7G00188320
rosa_rugosa	Rorug01G0052300 Rorug05G0212000 Rorug06G0130700 Rorug06G0131100 Rorug06G0466200 Rorug06G0466300 Rorug06G0466400 Rorug06G0466500 Rorug06G0466700 Rorug07G0208500 Rorug07G0294600
rosa_samantha	Rh4AG137600 Rh6DG237300 Rh6DG237800 Rh7AG076200 Rh7AG076300 Rh7AG076500 Rh7AG076600 Rh7AG350700 Rh7BG070800 Rh7BG070900 Rh7BG071000 Rh7BG071100
rosa_wichuraiana	Rw6G020990 Rw6G021010 Rw7G005900 Rw7G005910 Rw7G005920 Rw7G005940 Rw7G005950 Rw7G005970 Rw7G029600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	127, 351
AccB7I	CCANNNNNTGG	1 cut(s)	31
AccII	CGCG	1 cut(s)	199
AclWI	GGATC	1 cut(s)	227
AcoI	YGGCCR	1 cut(s)	340
AcsI	RAATTY	2 cut(s)	149, 263
AdeI	CACNNNGTG	1 cut(s)	124
AfiI	CCNNNNNNNGG	3 cut(s)	31, 52, 384
AhlI	ACTAGT	1 cut(s)	136
AjnI	CCWGG	1 cut(s)	354
AluBI	AGCT	4 cut(s)	22, 108, 322, 403
AluI	AGCT	4 cut(s)	22, 108, 322, 403
Alw21I	GWGCWC	3 cut(s)	24, 110, 411
Alw26I	GTCTC	1 cut(s)	106
Alw44I	GTGCAC	1 cut(s)	407
AlwI	GGATC	1 cut(s)	227
Ama87I	CYCGRG	1 cut(s)	109
AoxI	GGCC	1 cut(s)	340
ApaLI	GTGCAC	1 cut(s)	407
ApoI	RAATTY	2 cut(s)	149, 263
AspS9I	GGNCC	1 cut(s)	43
AvaI	CYCGRG	1 cut(s)	109
AvaII	GGWCC	1 cut(s)	43
BaeGI	GKGCMC	1 cut(s)	411
BanI	GGYRCC	2 cut(s)	127, 351
BanII	GRGCYC	2 cut(s)	24, 110
Bbv12I	GWGCWC	3 cut(s)	24, 110, 411
BccI	CCATC	2 cut(s)	167, 342
BcgI	CGANNNNNNTGC	2 cut(s)	333, 367
BciT130I	CCWGG	1 cut(s)	356
BcoDI	GTCTC	1 cut(s)	106
BcuI	ACTAGT	1 cut(s)	136
BfaI	CTAG	3 cut(s)	137, 389, 404
Bme1390I	CCNGG	1 cut(s)	356
Bme18I	GGWCC	1 cut(s)	43
BmeT110I	CYCGRG	1 cut(s)	109
BmgT120I	GGNCC	1 cut(s)	43
BmiI	GGNNCC	2 cut(s)	129, 353
BmrFI	CCNGG	1 cut(s)	356
BmrI	ACTGGG	1 cut(s)	116
BmuI	ACTGGG	1 cut(s)	116
BpuEI	CTTGAG	1 cut(s)	106
Bsa29I	ATCGAT	1 cut(s)	171
BsaJI	CCNNGG	2 cut(s)	304, 355
Bsc4I	CCNNNNNNNGG	3 cut(s)	31, 52, 384
Bse1I	ACTGG	1 cut(s)	122
BseBI	CCWGG	1 cut(s)	356
BseCI	ATCGAT	1 cut(s)	171
BseDI	CCNNGG	2 cut(s)	304, 355
BseGI	GGATG	1 cut(s)	324
BseLI	CCNNNNNNNGG	3 cut(s)	31, 52, 384
BseNI	ACTGG	1 cut(s)	122
BseSI	GKGCMC	1 cut(s)	411
Bsh1236I	CGCG	1 cut(s)	199
Bsh1285I	CGRYCG	1 cut(s)	171
BshFI	GGCC	1 cut(s)	342
BshNI	GGYRCC	2 cut(s)	127, 351
BshVI	ATCGAT	1 cut(s)	171
BsiEI	CGRYCG	1 cut(s)	171
BsiHKAI	GWGCWC	3 cut(s)	24, 110, 411
BsiHKCI	CYCGRG	1 cut(s)	109
BslI	CCNNNNNNNGG	3 cut(s)	31, 52, 384
BsmAI	GTCTC	1 cut(s)	106
BsnI	GGCC	1 cut(s)	342
BsoBI	CYCGRG	1 cut(s)	109
Bsp1286I	GDGCHC	3 cut(s)	24, 110, 411
Bsp143I	GATC	2 cut(s)	168, 232
Bsp68I	TCGCGA	1 cut(s)	199
BspANI	GGCC	1 cut(s)	342
BspDI	ATCGAT	1 cut(s)	171
BspFNI	CGCG	1 cut(s)	199
BspHI	TCATGA	1 cut(s)	282
BspLI	GGNNCC	2 cut(s)	129, 353
BspPI	GGATC	1 cut(s)	227
BspQI	GCTCTTC	1 cut(s)	12
BspT107I	GGYRCC	2 cut(s)	127, 351
BsrI	ACTGG	1 cut(s)	122
BssECI	CCNNGG	2 cut(s)	304, 355
BssMI	GATC	2 cut(s)	168, 232
Bst2UI	CCWGG	1 cut(s)	356
Bst4CI	ACNGT	2 cut(s)	31, 382
Bst6I	CTCTTC	3 cut(s)	12, 51, 223
BstF5I	GGATG	1 cut(s)	324
BstFNI	CGCG	1 cut(s)	199
BstKTI	GATC	2 cut(s)	171, 235
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	2 cut(s)	168, 232
BstMCI	CGRYCG	1 cut(s)	171
BstMWI	GCNNNNNNNGC	1 cut(s)	370
BstNI	CCWGG	1 cut(s)	356
BstSCI	CCNGG	1 cut(s)	354
BstSLI	GKGCMC	1 cut(s)	411
BstUI	CGCG	1 cut(s)	199
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
Bsu15I	ATCGAT	1 cut(s)	171
BsuRI	GGCC	1 cut(s)	342
BsuTUI	ATCGAT	1 cut(s)	171
BtsCI	GGATG	1 cut(s)	324
BtsI	GCAGTG	1 cut(s)	409
BtsIMutI	CAGTG	2 cut(s)	129, 409
BtuMI	TCGCGA	1 cut(s)	199
CciI	TCATGA	1 cut(s)	282
Cfr13I	GGNCC	1 cut(s)	43
ClaI	ATCGAT	1 cut(s)	171
CviAII	CATG	4 cut(s)	40, 146, 283, 311
CviJI	RGCY	7 cut(s)	22, 108, 322, 342, 373, 388, 403
CviKI_1	RGCY	7 cut(s)	22, 108, 322, 342, 373, 388, 403
DpnI	GATC	2 cut(s)	170, 234
DpnII	GATC	2 cut(s)	168, 232
DraIII	CACNNNGTG	1 cut(s)	124
EaeI	YGGCCR	1 cut(s)	340
Eam1104I	CTCTTC	3 cut(s)	12, 51, 223
EarI	CTCTTC	3 cut(s)	12, 51, 223
Ecl136II	GAGCTC	2 cut(s)	22, 108
Eco24I	GRGCYC	2 cut(s)	24, 110
Eco47I	GGWCC	1 cut(s)	43
Eco53kI	GAGCTC	2 cut(s)	22, 108
Eco88I	CYCGRG	1 cut(s)	109
EcoICRI	GAGCTC	2 cut(s)	22, 108
EcoRII	CCWGG	1 cut(s)	354
EcoT38I	GRGCYC	2 cut(s)	24, 110
FaeI	CATG	4 cut(s)	43, 149, 286, 314
FaiI	YATR	9 cut(s)	41, 92, 147, 180, 185, 206, 284, 296, 312
FatI	CATG	4 cut(s)	39, 145, 282, 310
FokI	GGATG	1 cut(s)	311
FriOI	GRGCYC	2 cut(s)	24, 110
FspBI	CTAG	3 cut(s)	137, 389, 404
HaeIII	GGCC	1 cut(s)	342
Hin1II	CATG	4 cut(s)	43, 149, 286, 314
HinfI	GANTC	3 cut(s)	7, 59, 201
Hpy166II	GTNNAC	1 cut(s)	409
Hpy188I	TCNGA	3 cut(s)	64, 250, 305
Hpy188III	TCNNGA	4 cut(s)	111, 198, 272, 283
Hpy8I	GTNNAC	1 cut(s)	409
HpyCH4III	ACNGT	2 cut(s)	31, 382
HpyCH4V	TGCA	2 cut(s)	364, 409
HpyF10VI	GCNNNNNNNGC	1 cut(s)	370
Hsp92II	CATG	4 cut(s)	43, 149, 286, 314
Kzo9I	GATC	2 cut(s)	168, 232
LguI	GCTCTTC	1 cut(s)	12
LmnI	GCTCC	2 cut(s)	27, 219
LpnPI	CCDG	5 cut(s)	135, 285, 324, 341, 368
MaeI	CTAG	3 cut(s)	137, 389, 404
MalI	GATC	2 cut(s)	170, 234
MboI	GATC	2 cut(s)	168, 232
MboII	GAAGA	5 cut(s)	16, 29, 68, 240, 357
MflI	RGATCY	1 cut(s)	232
MhlI	GDGCHC	3 cut(s)	24, 110, 411
MluCI	AATT	4 cut(s)	149, 211, 263, 365
MlyI	GAGTC	1 cut(s)	68
MmeI	TCCRAC	2 cut(s)	57, 228
MnlI	CCTC	4 cut(s)	151, 253, 299, 311
MseI	TTAA	2 cut(s)	210, 418
MspR9I	CCNGG	1 cut(s)	356
MvaI	CCWGG	1 cut(s)	356
MvnI	CGCG	1 cut(s)	199
MwoI	GCNNNNNNNGC	1 cut(s)	370
NdeII	GATC	2 cut(s)	168, 232
NlaIII	CATG	4 cut(s)	43, 149, 286, 314
NlaIV	GGNNCC	2 cut(s)	129, 353
NruI	TCGCGA	1 cut(s)	199
PaeR7I	CTCGAG	1 cut(s)	109
PagI	TCATGA	1 cut(s)	282
PciSI	GCTCTTC	1 cut(s)	12
PfeI	GAWTC	2 cut(s)	7, 201
PflMI	CCANNNNNTGG	1 cut(s)	31
Ple19I	CGATCG	1 cut(s)	171
PleI	GAGTC	1 cut(s)	67
PpsI	GAGTC	1 cut(s)	67
Psp124BI	GAGCTC	2 cut(s)	24, 110
Psp6I	CCWGG	1 cut(s)	354
PspGI	CCWGG	1 cut(s)	354
PspN4I	GGNNCC	2 cut(s)	129, 353
PspPI	GGNCC	1 cut(s)	43
PsuI	RGATCY	1 cut(s)	232
PvuI	CGATCG	1 cut(s)	171
RruI	TCGCGA	1 cut(s)	199
SacI	GAGCTC	2 cut(s)	24, 110
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	2 cut(s)	210, 418
Sau3AI	GATC	2 cut(s)	168, 232
Sau96I	GGNCC	1 cut(s)	43
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	1 cut(s)	356
SduI	GDGCHC	3 cut(s)	24, 110, 411
SetI	ASST	6 cut(s)	24, 110, 281, 303, 324, 405
Sfr274I	CTCGAG	1 cut(s)	109
SinI	GGWCC	1 cut(s)	43
SlaI	CTCGAG	1 cut(s)	109
SmlI	CTYRAG	2 cut(s)	85, 109
SmoI	CTYRAG	2 cut(s)	85, 109
SpeI	ACTAGT	1 cut(s)	136
Sse9I	AATT	4 cut(s)	149, 211, 263, 365
SspMI	CTAG	3 cut(s)	137, 389, 404
SstI	GAGCTC	2 cut(s)	24, 110
StyD4I	CCNGG	1 cut(s)	354
TaaI	ACNGT	2 cut(s)	31, 382
TaqI	TCGA	3 cut(s)	110, 156, 171
TaqII	GACCGA	1 cut(s)	60
TasI	AATT	4 cut(s)	149, 211, 263, 365
TfiI	GAWTC	2 cut(s)	7, 201
Tru1I	TTAA	2 cut(s)	210, 418
Tru9I	TTAA	2 cut(s)	210, 418
TscAI	CASTG	2 cut(s)	129, 416
TspDTI	ATGAA	4 cut(s)	17, 162, 271, 299
TspRI	CASTG	2 cut(s)	129, 416
Van91I	CCANNNNNTGG	1 cut(s)	31
VneI	GTGCAC	1 cut(s)	407
VpaK11BI	GGWCC	1 cut(s)	43
XapI	RAATTY	2 cut(s)	149, 263
XcmI	CCANNNNNNNNNTGG	1 cut(s)	32
XhoI	CTCGAG	1 cut(s)	109
XspI	CTAG	3 cut(s)	137, 389, 404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.