RchiOBHm_Chr2g0140631

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
58148379 .. 58148630
252 bp
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UTR
Exon/CDS
Intron
PRQ51104

Sequence Viewer

Length: 252 bp
ATGAACAACAATATCAACCTCCGGGGACATGACTTTCAGCTTATCCCATTTGGGTCTGGGCGAAGAGGTTGTCCCGGTATGCAATTAGGGCTAACCACAATTCAGCTAGTTTTGGCACAGCTGGGCCACTGCTTTAACTGGGAGCTCCCAACTGGCATGCAACCTCAAGACTTGGACATGGCTGAGAATTTCGGTTTAAGTATGTCAAAAGCCAAACACTTGCTTGCCAAGCCAACTTACCGTCTTATGTAG

Protein Analysis

83

Amino Acids

9.29

Weight (kDa)

8.8

Isoelectric Point (pI)

32.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 5 - 73 3.6e-11 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000282)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g12350 FvH4_5g12380 FvH4_5g12392 FvH4_5g12400 FvH4_5g12430
malus_domestica MD06G1213300.v1.1 MD06G1213500.v1.1 MD06G1213700.v1.1 MD06G1213800.v1.1 MD06G1213900.v1.1 MD06G1214000.v1.1 MD06G1214400.v1.1 MD14G1224300.v1.1 MD14G1224400.v1.1 MD14G1224600.v1.1 MD14G1224700.v1.1 MD14G1224800.v1.1 MD14G1224900.v1.1 MD14G1225100.v1.1 MD14G1225400.v1.1
prunus_persica Prupe.5G219700_v2.0.a1 Prupe.5G219800_v2.0.a1 Prupe.5G219900_v2.0.a1 Prupe.8G078500_v2.0.a1
pyrus_communis pycom06g19100 pycom14g18590 pycom14g18600 pycom14g18610 pycom14g18660
rosa_chinensis RchiOBHm_Chr0c12g0499591 RchiOBHm_Chr2g0140591 RchiOBHm_Chr2g0140631 RchiOBHm_Chr2g0140641 RchiOBHm_Chr2g0140651 RchiOBHm_Chr4g0417991 RchiOBHm_Chr4g0418001 RchiOBHm_Chr4g0418101 RchiOBHm_Chr4g0418111 RchiOBHm_Chr4g0418121 RchiOBHm_Chr6g0280191 RchiOBHm_Chr6g0280241 RchiOBHm_Chr6g0280251 RchiOBHm_Chr7g0185031 RchiOBHm_Chr7g0185051 RchiOBHm_Chr7g0185081 RchiOBHm_Chr7g0185091 RchiOBHm_Chr7g0185111 RchiOBHm_Chr7g0185131 RchiOBHm_Chr7g0185151 RchiOBHm_Chr7g0185161 RchiOBHm_Chr7g0185191 RchiOBHm_Chr7g0222431
rosa_laevigata RLG00000002061 RLG00000004934 RLG00000004935 RLG00000004937 RLG00000013071 RLG00000013077 RLG00000019621 RLG00000019881 RLG00000019884 RLG00000019887 RLG00000019888 RLG00000028839
rosa_multiflora Rmu_co8014370.1_g000001 Rmu_co8334683.1_g000001 Rmu_co8440383.1_g000001 Rmu_sc0002826.1_g000008 Rmu_sc0002826.1_g000009 Rmu_sc0002826.1_g000030 Rmu_sc0004483.1_g000005 Rmu_sc0004638.1_g000003 Rmu_sc0004638.1_g000004 Rmu_sc0005756.1_g000003 Rmu_sc0006493.1_g000023 Rmu_sc0006493.1_g000024 Rmu_sc0007137.1_g000017 Rmu_sc0008496.1_g000022 Rmu_sc0008769.1_g000003 Rmu_sc0013612.1_g000026 Rmu_sc0013864.1_g000001 Rmu_sc0013864.1_g000007 Rmu_sc0013864.1_g000008 Rmu_sc0030128.1_g000001 Rmu_sc0041660.1_g000001 Rmu_ssc0000289.1_g000001
rosa_roxburghii Rroxscaffold_2G00104640 Rroxscaffold_3G00253970 Rroxscaffold_3G00269170 Rroxscaffold_3G00269200 Rroxscaffold_3G00269210 Rroxscaffold_3G00269220 Rroxscaffold_3G00269230 Rroxscaffold_7G00188320
rosa_rugosa Rorug01G0052300 Rorug05G0212000 Rorug06G0130700 Rorug06G0131100 Rorug06G0466200 Rorug06G0466300 Rorug06G0466400 Rorug06G0466500 Rorug06G0466700 Rorug07G0208500 Rorug07G0294600
rosa_samantha Rh4AG137600 Rh6DG237300 Rh6DG237800 Rh7AG076200 Rh7AG076300 Rh7AG076500 Rh7AG076600 Rh7AG350700 Rh7BG070800 Rh7BG070900 Rh7BG071000 Rh7BG071100
rosa_wichuraiana Rw6G020990 Rw6G021010 Rw7G005900 Rw7G005910 Rw7G005920 Rw7G005940 Rw7G005950 Rw7G005970 Rw7G029600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 187
AluBI AGCT 4 cut(s) 40, 106, 121, 145
AluI AGCT 4 cut(s) 40, 106, 121, 145
Alw21I GWGCWC 1 cut(s) 147
AoxI GGCC 1 cut(s) 124
ApoI RAATTY 1 cut(s) 187
ArsI GACNNNNNNTTYG 2 cut(s) 55, 87
AspS9I GGNCC 1 cut(s) 124
AsuC2I CCSGG 2 cut(s) 23, 75
BanII GRGCYC 1 cut(s) 147
Bbv12I GWGCWC 1 cut(s) 147
BcnI CCSGG 2 cut(s) 23, 75
BfaI CTAG 1 cut(s) 107
Bme1390I CCNGG 2 cut(s) 23, 75
BmgT120I GGNCC 1 cut(s) 124
BmrFI CCNGG 2 cut(s) 23, 75
BmrI ACTGGG 1 cut(s) 148
BmuI ACTGGG 1 cut(s) 148
BpuEI CTTGAG 1 cut(s) 150
BpuMI CCSGG 2 cut(s) 23, 75
BsaJI CCNNGG 1 cut(s) 22
Bse1I ACTGG 2 cut(s) 143, 157
BseDI CCNNGG 1 cut(s) 22
BseMII CTCAG 1 cut(s) 174
BseNI ACTGG 2 cut(s) 143, 157
BseYI CCCAGC 1 cut(s) 121
BshFI GGCC 1 cut(s) 126
BsiHKAI GWGCWC 1 cut(s) 147
BsiSI CCGG 2 cut(s) 22, 75
BslFI GGGAC 2 cut(s) 39, 57
BsmFI GGGAC 2 cut(s) 39, 57
BsnI GGCC 1 cut(s) 126
Bsp1286I GDGCHC 1 cut(s) 147
BspANI GGCC 1 cut(s) 126
BspCNI CTCAG 1 cut(s) 175
BsrI ACTGG 2 cut(s) 143, 157
BssECI CCNNGG 1 cut(s) 22
Bst4CI ACNGT 1 cut(s) 242
Bst6I CTCTTC 1 cut(s) 58
BstC8I GCNNGC 2 cut(s) 158, 225
BstDEI CTNAG 1 cut(s) 183
BstMWI GCNNNNNNNGC 2 cut(s) 88, 229
BstNSI RCATGY 1 cut(s) 160
BstSCI CCNGG 2 cut(s) 21, 73
BsuRI GGCC 1 cut(s) 126
BtsI GCAGTG 1 cut(s) 127
BtsIMutI CAGTG 1 cut(s) 127
Cac8I GCNNGC 2 cut(s) 158, 225
Cfr13I GGNCC 1 cut(s) 124
CviAII CATG 3 cut(s) 29, 157, 178
CviJI RGCY 9 cut(s) 40, 91, 106, 121, 126, 145, 182, 212, 232
CviKI_1 RGCY 9 cut(s) 40, 91, 106, 121, 126, 145, 182, 212, 232
DdeI CTNAG 1 cut(s) 183
Eam1104I CTCTTC 1 cut(s) 58
EarI CTCTTC 1 cut(s) 58
Ecl136II GAGCTC 1 cut(s) 145
Eco24I GRGCYC 1 cut(s) 147
Eco53kI GAGCTC 1 cut(s) 145
EcoICRI GAGCTC 1 cut(s) 145
EcoT38I GRGCYC 1 cut(s) 147
FaeI CATG 3 cut(s) 32, 160, 181
FaiI YATR 6 cut(s) 30, 80, 158, 179, 203, 248
FaqI GGGAC 2 cut(s) 39, 57
FatI CATG 3 cut(s) 28, 156, 177
FriOI GRGCYC 1 cut(s) 147
FspBI CTAG 1 cut(s) 107
GsaI CCCAGC 1 cut(s) 125
HaeIII GGCC 1 cut(s) 126
HapII CCGG 2 cut(s) 22, 75
Hin1II CATG 3 cut(s) 32, 160, 181
HpaII CCGG 2 cut(s) 22, 75
Hpy188III TCNNGA 1 cut(s) 167
HpyCH4III ACNGT 1 cut(s) 242
HpyCH4V TGCA 2 cut(s) 82, 160
HpyF10VI GCNNNNNNNGC 2 cut(s) 88, 229
HpyF3I CTNAG 1 cut(s) 183
Hsp92II CATG 3 cut(s) 32, 160, 181
LmnI GCTCC 2 cut(s) 142, 150
LpnPI CCDG 6 cut(s) 35, 42, 88, 107, 124, 138
MaeI CTAG 1 cut(s) 107
MboII GAAGA 1 cut(s) 75
MhlI GDGCHC 1 cut(s) 147
MluCI AATT 3 cut(s) 83, 99, 187
MnlI CCTC 3 cut(s) 29, 59, 174
MseI TTAA 2 cut(s) 135, 197
MspA1I CMGCKG 1 cut(s) 121
MspI CCGG 2 cut(s) 22, 75
MspR9I CCNGG 2 cut(s) 23, 75
MwoI GCNNNNNNNGC 2 cut(s) 88, 229
NciI CCSGG 2 cut(s) 23, 75
NlaIII CATG 3 cut(s) 32, 160, 181
NspI RCATGY 1 cut(s) 160
PaeI GCATGC 1 cut(s) 160
Psp124BI GAGCTC 1 cut(s) 147
PspFI CCCAGC 1 cut(s) 121
PspPI GGNCC 1 cut(s) 124
PvuII CAGCTG 1 cut(s) 121
SacI GAGCTC 1 cut(s) 147
SaqAI TTAA 2 cut(s) 135, 197
Sau96I GGNCC 1 cut(s) 124
ScrFI CCNGG 2 cut(s) 23, 75
SduI GDGCHC 1 cut(s) 147
SetI ASST 7 cut(s) 21, 42, 70, 108, 123, 147, 166
SmlI CTYRAG 1 cut(s) 165
SmoI CTYRAG 1 cut(s) 165
SphI GCATGC 1 cut(s) 160
Sse9I AATT 3 cut(s) 83, 99, 187
SspMI CTAG 1 cut(s) 107
SstI GAGCTC 1 cut(s) 147
StyD4I CCNGG 2 cut(s) 21, 73
TaaI ACNGT 1 cut(s) 242
TasI AATT 3 cut(s) 83, 99, 187
Tru1I TTAA 2 cut(s) 135, 197
Tru9I TTAA 2 cut(s) 135, 197
TscAI CASTG 1 cut(s) 134
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 134
XapI RAATTY 1 cut(s) 187
XceI RCATGY 1 cut(s) 160
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.