Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000282

Physical Location & Seq

Genomic Coordinates Reverse (-)

58148694 .. 58150193

Gene Structure 1500 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51105

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGATTGAGAACATAACGTATAGGATGGTGTTGGGTTGTAAAAAGGATGAGAGGTATGATTTGAAAGCCATTGTTGAGGAGACACTTTTATTGGCTGGGGCTTTCAATATATCTGATTTCGTTCCTTCCCTTGCTGCACTTGATATTCAGGGATTGACTAAGCGCTTAAAGAAAGTTAGCAAGATGATGGATCAACTCCTGGATAAGATATTAGACGAGCATGAACAAGTTTCCAATACTAAGAATGGGAAACAAGGCCAGCATGGGGACTTTGTAGACATGTTGCTTTCATTAACGAACCAACCGCTGAAGCCAAATGATGAGCAAGTACACTTTCTTGATCGAACAAATATGAATGCCATTGACATGATCGTGGTGGCTATAGATACTTCAGCCACAATGATTGTTTGGAGCCTTGCTGAGCTCTTGAGGCATCCAAGGATCATGAAGAATCTCCAAGAAGAGCTCCAAAGTGTGGTGGGTATGGACAAATTGATAGAAGAATCAGATTTGCCCAAGCTGGATTACTTGAGTATGGTGGTGAAGGAGAGCTTCAGACTACACCCAGTTGCACCGTTACTAGTCCCACGTGAATCTATTGAGGACATTACAATCGATGGATATGACATACCCAAAAAGTCTTGGATCATAGTAAACATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

220

Amino Acids

25.06

Weight (kDa)

5.07

Isoelectric Point (pI)

35.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	2 - 220	9e-42	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000282)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12350 FvH4_5g12380 FvH4_5g12392 FvH4_5g12400 FvH4_5g12430
malus_domestica	MD06G1213300.v1.1 MD06G1213500.v1.1 MD06G1213700.v1.1 MD06G1213800.v1.1 MD06G1213900.v1.1 MD06G1214000.v1.1 MD06G1214400.v1.1 MD14G1224300.v1.1 MD14G1224400.v1.1 MD14G1224600.v1.1 MD14G1224700.v1.1 MD14G1224800.v1.1 MD14G1224900.v1.1 MD14G1225100.v1.1 MD14G1225400.v1.1
prunus_persica	Prupe.5G219700_v2.0.a1 Prupe.5G219800_v2.0.a1 Prupe.5G219900_v2.0.a1 Prupe.8G078500_v2.0.a1
pyrus_communis	pycom06g19100 pycom14g18590 pycom14g18600 pycom14g18610 pycom14g18660
rosa_chinensis	RchiOBHm_Chr0c12g0499591 RchiOBHm_Chr2g0140591 RchiOBHm_Chr2g0140631 RchiOBHm_Chr2g0140641 RchiOBHm_Chr2g0140651 RchiOBHm_Chr4g0417991 RchiOBHm_Chr4g0418001 RchiOBHm_Chr4g0418101 RchiOBHm_Chr4g0418111 RchiOBHm_Chr4g0418121 RchiOBHm_Chr6g0280191 RchiOBHm_Chr6g0280241 RchiOBHm_Chr6g0280251 RchiOBHm_Chr7g0185031 RchiOBHm_Chr7g0185051 RchiOBHm_Chr7g0185081 RchiOBHm_Chr7g0185091 RchiOBHm_Chr7g0185111 RchiOBHm_Chr7g0185131 RchiOBHm_Chr7g0185151 RchiOBHm_Chr7g0185161 RchiOBHm_Chr7g0185191 RchiOBHm_Chr7g0222431
rosa_laevigata	RLG00000002061 RLG00000004934 RLG00000004935 RLG00000004937 RLG00000013071 RLG00000013077 RLG00000019621 RLG00000019881 RLG00000019884 RLG00000019887 RLG00000019888 RLG00000028839
rosa_multiflora	Rmu_co8014370.1_g000001 Rmu_co8334683.1_g000001 Rmu_co8440383.1_g000001 Rmu_sc0002826.1_g000008 Rmu_sc0002826.1_g000009 Rmu_sc0002826.1_g000030 Rmu_sc0004483.1_g000005 Rmu_sc0004638.1_g000003 Rmu_sc0004638.1_g000004 Rmu_sc0005756.1_g000003 Rmu_sc0006493.1_g000023 Rmu_sc0006493.1_g000024 Rmu_sc0007137.1_g000017 Rmu_sc0008496.1_g000022 Rmu_sc0008769.1_g000003 Rmu_sc0013612.1_g000026 Rmu_sc0013864.1_g000001 Rmu_sc0013864.1_g000007 Rmu_sc0013864.1_g000008 Rmu_sc0030128.1_g000001 Rmu_sc0041660.1_g000001 Rmu_ssc0000289.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104640 Rroxscaffold_3G00253970 Rroxscaffold_3G00269170 Rroxscaffold_3G00269200 Rroxscaffold_3G00269210 Rroxscaffold_3G00269220 Rroxscaffold_3G00269230 Rroxscaffold_7G00188320
rosa_rugosa	Rorug01G0052300 Rorug05G0212000 Rorug06G0130700 Rorug06G0131100 Rorug06G0466200 Rorug06G0466300 Rorug06G0466400 Rorug06G0466500 Rorug06G0466700 Rorug07G0208500 Rorug07G0294600
rosa_samantha	Rh4AG137600 Rh6DG237300 Rh6DG237800 Rh7AG076200 Rh7AG076300 Rh7AG076500 Rh7AG076600 Rh7AG350700 Rh7BG070800 Rh7BG070900 Rh7BG071000 Rh7BG071100
rosa_wichuraiana	Rw6G020990 Rw6G021010 Rw7G005900 Rw7G005910 Rw7G005920 Rw7G005940 Rw7G005950 Rw7G005970 Rw7G029600

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	475
AccI	GTMKAC	1 cut(s)	276
AciI	CCGC	1 cut(s)	305
AclWI	GGATC	3 cut(s)	198, 449, 653
AcuI	CTGAAG	3 cut(s)	329, 375, 538
AcvI	CACGTG	1 cut(s)	590
AfaI	GTAC	1 cut(s)	330
AfeI	AGCGCT	1 cut(s)	164
AfiI	CCNNNNNNNGG	2 cut(s)	265, 475
AflIII	ACRYGT	1 cut(s)	279
AgsI	TTSAA	2 cut(s)	64, 106
AhlI	ACTAGT	1 cut(s)	580
AjnI	CCWGG	1 cut(s)	198
AluBI	AGCT	4 cut(s)	424, 466, 520, 552
AluI	AGCT	4 cut(s)	424, 466, 520, 552
Alw21I	GWGCWC	2 cut(s)	426, 468
Alw26I	GTCTC	1 cut(s)	74
AlwI	GGATC	3 cut(s)	198, 449, 653
Aor51HI	AGCGCT	1 cut(s)	164
AoxI	GGCC	1 cut(s)	256
ApeKI	GCWGC	1 cut(s)	134
AspLEI	GCGC	1 cut(s)	165
AsuHPI	GGTGA	1 cut(s)	553
BanII	GRGCYC	2 cut(s)	426, 468
BbrPI	CACGTG	1 cut(s)	590
Bbv12I	GWGCWC	2 cut(s)	426, 468
BbvI	GCAGC	1 cut(s)	121
BccI	CCATC	3 cut(s)	19, 181, 611
BciT130I	CCWGG	1 cut(s)	200
BcoDI	GTCTC	1 cut(s)	74
BcuI	ACTAGT	1 cut(s)	580
BfaI	CTAG	2 cut(s)	581, 661
BfmI	CTRYAG	1 cut(s)	381
BfoI	RGCGCY	1 cut(s)	166
BisI	GCNGC	1 cut(s)	135
BlpI	GCTNAGC	1 cut(s)	420
BlsI	GCNGC	1 cut(s)	136
Bme1390I	CCNGG	1 cut(s)	200
BmiI	GGNNCC	1 cut(s)	413
BmrFI	CCNGG	1 cut(s)	200
BmrI	ACTGGG	1 cut(s)	560
BmsI	GCATC	1 cut(s)	442
BmuI	ACTGGG	1 cut(s)	560
Bpu1102I	GCTNAGC	1 cut(s)	420
BpuEI	CTTGAG	2 cut(s)	448, 550
Bsa29I	ATCGAT	1 cut(s)	615
BsaAI	YACGTR	1 cut(s)	590
BsaJI	CCNNGG	1 cut(s)	437
Bsc4I	CCNNNNNNNGG	2 cut(s)	265, 475
Bse1I	ACTGG	1 cut(s)	566
BseBI	CCWGG	1 cut(s)	200
BseCI	ATCGAT	1 cut(s)	615
BseDI	CCNNGG	1 cut(s)	437
BseGI	GGATG	3 cut(s)	30, 52, 433
BseLI	CCNNNNNNNGG	2 cut(s)	265, 475
BseMII	CTCAG	1 cut(s)	411
BseNI	ACTGG	1 cut(s)	566
BseRI	GAGGAG	1 cut(s)	92
BseXI	GCAGC	1 cut(s)	121
BseYI	CCCAGC	1 cut(s)	95
BsgI	GTGCAG	1 cut(s)	120
BshFI	GGCC	1 cut(s)	258
BshVI	ATCGAT	1 cut(s)	615
BsiHKAI	GWGCWC	2 cut(s)	426, 468
BslFI	GGGAC	2 cut(s)	281, 569
BslI	CCNNNNNNNGG	2 cut(s)	265, 475
BsmAI	GTCTC	1 cut(s)	74
BsmFI	GGGAC	2 cut(s)	281, 569
BsmI	GAATGC	1 cut(s)	361
BsnI	GGCC	1 cut(s)	258
Bsp1286I	GDGCHC	2 cut(s)	426, 468
Bsp143I	GATC	5 cut(s)	190, 340, 369, 441, 645
Bsp1720I	GCTNAGC	1 cut(s)	420
BspACI	CCGC	1 cut(s)	305
BspANI	GGCC	1 cut(s)	258
BspCNI	CTCAG	1 cut(s)	412
BspDI	ATCGAT	1 cut(s)	615
BspHI	TCATGA	1 cut(s)	444
BspLI	GGNNCC	1 cut(s)	413
BspPI	GGATC	3 cut(s)	198, 449, 653
BspQI	GCTCTTC	1 cut(s)	456
BsrI	ACTGG	1 cut(s)	566
BssECI	CCNNGG	1 cut(s)	437
BssMI	GATC	5 cut(s)	190, 340, 369, 441, 645
BssT1I	CCWWGG	1 cut(s)	437
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	1 cut(s)	576
Bst6I	CTCTTC	1 cut(s)	456
BstBAI	YACGTR	1 cut(s)	590
BstC8I	GCNNGC	1 cut(s)	260
BstDEI	CTNAG	3 cut(s)	159, 240, 420
BstF5I	GGATG	3 cut(s)	30, 52, 433
BstH2I	RGCGCY	1 cut(s)	166
BstHHI	GCGC	1 cut(s)	165
BstKTI	GATC	5 cut(s)	193, 343, 372, 444, 648
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	5 cut(s)	190, 340, 369, 441, 645
BstMWI	GCNNNNNNNGC	1 cut(s)	430
BstNI	CCWGG	1 cut(s)	200
BstNSI	RCATGY	1 cut(s)	283
BstSCI	CCNGG	1 cut(s)	198
BstSFI	CTRYAG	1 cut(s)	381
BstV1I	GCAGC	1 cut(s)	121
Bsu15I	ATCGAT	1 cut(s)	615
BsuRI	GGCC	1 cut(s)	258
BsuTUI	ATCGAT	1 cut(s)	615
BtsCI	GGATG	3 cut(s)	30, 52, 433
Cac8I	GCNNGC	1 cut(s)	260
CciI	TCATGA	1 cut(s)	444
CfoI	GCGC	1 cut(s)	165
ClaI	ATCGAT	1 cut(s)	615
Csp6I	GTAC	1 cut(s)	329
CspCI	CAANNNNNGTGG	2 cut(s)	385, 420
CviAII	CATG	5 cut(s)	221, 263, 280, 367, 445
CviQI	GTAC	1 cut(s)	329
DdeI	CTNAG	3 cut(s)	159, 240, 420
DpnI	GATC	5 cut(s)	192, 342, 371, 443, 647
DpnII	GATC	5 cut(s)	190, 340, 369, 441, 645
Eam1104I	CTCTTC	1 cut(s)	456
EarI	CTCTTC	1 cut(s)	456
Ecl136II	GAGCTC	2 cut(s)	424, 466
Eco130I	CCWWGG	1 cut(s)	437
Eco24I	GRGCYC	2 cut(s)	426, 468
Eco47III	AGCGCT	1 cut(s)	164
Eco53kI	GAGCTC	2 cut(s)	424, 466
Eco57I	CTGAAG	3 cut(s)	329, 375, 538
Eco72I	CACGTG	1 cut(s)	590
EcoICRI	GAGCTC	2 cut(s)	424, 466
EcoRII	CCWGG	1 cut(s)	198
EcoT14I	CCWWGG	1 cut(s)	437
EcoT38I	GRGCYC	2 cut(s)	426, 468
ErhI	CCWWGG	1 cut(s)	437
FaeI	CATG	5 cut(s)	224, 266, 283, 370, 448
FalI	AAGNNNNNCTT	2 cut(s)	536, 568
FaqI	GGGAC	2 cut(s)	281, 569
FatI	CATG	5 cut(s)	220, 262, 279, 366, 444
FblI	GTMKAC	1 cut(s)	276
Fnu4HI	GCNGC	1 cut(s)	135
FokI	GGATG	3 cut(s)	37, 59, 420
FriOI	GRGCYC	2 cut(s)	426, 468
Fsp4HI	GCNGC	1 cut(s)	135
FspBI	CTAG	2 cut(s)	581, 661
GlaI	GCGC	1 cut(s)	164
GluI	GCNGC	1 cut(s)	135
GsaI	CCCAGC	1 cut(s)	99
HaeII	RGCGCY	1 cut(s)	166
HaeIII	GGCC	1 cut(s)	258
HhaI	GCGC	1 cut(s)	165
Hin1II	CATG	5 cut(s)	224, 266, 283, 370, 448
Hin6I	GCGC	1 cut(s)	163
HinP1I	GCGC	1 cut(s)	163
HinfI	GANTC	3 cut(s)	451, 503, 593
HphI	GGTGA	1 cut(s)	553
Hpy166II	GTNNAC	3 cut(s)	277, 331, 655
Hpy188I	TCNGA	3 cut(s)	115, 508, 557
Hpy188III	TCNNGA	3 cut(s)	338, 427, 445
Hpy8I	GTNNAC	3 cut(s)	277, 331, 655
HpyAV	CCTTC	2 cut(s)	135, 538
HpyCH4III	ACNGT	1 cut(s)	576
HpyCH4IV	ACGT	2 cut(s)	17, 589
HpyCH4V	TGCA	2 cut(s)	137, 572
HpyF10VI	GCNNNNNNNGC	1 cut(s)	430
HpyF3I	CTNAG	3 cut(s)	159, 240, 420
HpySE526I	ACGT	2 cut(s)	17, 589
Hsp92II	CATG	5 cut(s)	224, 266, 283, 370, 448
HspAI	GCGC	1 cut(s)	163
Kzo9I	GATC	5 cut(s)	190, 340, 369, 441, 645
LguI	GCTCTTC	1 cut(s)	456
LmnI	GCTCC	2 cut(s)	411, 471
LpnPI	CCDG	7 cut(s)	81, 134, 185, 212, 272, 506, 579
Lsp1109I	GCAGC	1 cut(s)	121
LweI	GCATC	1 cut(s)	442
MaeI	CTAG	2 cut(s)	581, 661
MaeII	ACGT	2 cut(s)	17, 589
MaeIII	GTNAC	1 cut(s)	576
MalI	GATC	5 cut(s)	192, 342, 371, 443, 647
MboI	GATC	5 cut(s)	190, 340, 369, 441, 645
MboII	GAAGA	3 cut(s)	460, 473, 512
MhlI	GDGCHC	2 cut(s)	426, 468
MluCI	AATT	1 cut(s)	491
MnlI	CCTC	4 cut(s)	45, 70, 423, 595
MseI	TTAA	2 cut(s)	167, 293
MslI	CAYNNNNRTG	2 cut(s)	365, 371
MspA1I	CMGCKG	1 cut(s)	307
MspR9I	CCNGG	1 cut(s)	200
Mva1269I	GAATGC	1 cut(s)	361
MvaI	CCWGG	1 cut(s)	200
MwoI	GCNNNNNNNGC	1 cut(s)	430
NdeII	GATC	5 cut(s)	190, 340, 369, 441, 645
NlaIII	CATG	5 cut(s)	224, 266, 283, 370, 448
NlaIV	GGNNCC	1 cut(s)	413
NspI	RCATGY	1 cut(s)	283
PagI	TCATGA	1 cut(s)	444
PciI	ACATGT	1 cut(s)	279
PciSI	GCTCTTC	1 cut(s)	456
PctI	GAATGC	1 cut(s)	361
PfeI	GAWTC	3 cut(s)	451, 503, 593
PflMI	CCANNNNNTGG	1 cut(s)	475
PfoI	TCCNGGA	1 cut(s)	198
PkrI	GCNGC	1 cut(s)	136
PmaCI	CACGTG	1 cut(s)	590
PmlI	CACGTG	1 cut(s)	590
Ppu21I	YACGTR	1 cut(s)	590
PscI	ACATGT	1 cut(s)	279
Psp124BI	GAGCTC	2 cut(s)	426, 468
Psp6I	CCWGG	1 cut(s)	198
PspCI	CACGTG	1 cut(s)	590
PspFI	CCCAGC	1 cut(s)	95
PspGI	CCWGG	1 cut(s)	198
PspN4I	GGNNCC	1 cut(s)	413
RsaI	GTAC	1 cut(s)	330
RsaNI	GTAC	1 cut(s)	329
RseI	CAYNNNNRTG	2 cut(s)	365, 371
SacI	GAGCTC	2 cut(s)	426, 468
SapI	GCTCTTC	1 cut(s)	456
SaqAI	TTAA	2 cut(s)	167, 293
SatI	GCNGC	1 cut(s)	135
Sau3AI	GATC	5 cut(s)	190, 340, 369, 441, 645
ScrFI	CCNGG	1 cut(s)	200
SduI	GDGCHC	2 cut(s)	426, 468
SetI	ASST	7 cut(s)	20, 56, 426, 468, 522, 554, 592
SfaNI	GCATC	1 cut(s)	442
SfcI	CTRYAG	1 cut(s)	381
SmiMI	CAYNNNNRTG	2 cut(s)	365, 371
SmlI	CTYRAG	2 cut(s)	427, 529
SmoI	CTYRAG	2 cut(s)	427, 529
SpeI	ACTAGT	1 cut(s)	580
Sse9I	AATT	1 cut(s)	491
SsiI	CCGC	1 cut(s)	305
SspMI	CTAG	2 cut(s)	581, 661
SstI	GAGCTC	2 cut(s)	426, 468
StyD4I	CCNGG	1 cut(s)	198
StyI	CCWWGG	1 cut(s)	437
TaaI	ACNGT	1 cut(s)	576
TaiI	ACGT	2 cut(s)	20, 592
TaqI	TCGA	2 cut(s)	343, 615
TasI	AATT	1 cut(s)	491
TatI	WGTACW	1 cut(s)	328
TfiI	GAWTC	3 cut(s)	451, 503, 593
Tru1I	TTAA	2 cut(s)	167, 293
Tru9I	TTAA	2 cut(s)	167, 293
TseI	GCWGC	1 cut(s)	134
TspDTI	ATGAA	4 cut(s)	237, 279, 368, 461
Van91I	CCANNNNNTGG	1 cut(s)	475
XceI	RCATGY	1 cut(s)	283
XmiI	GTMKAC	1 cut(s)	276
XspI	CTAG	2 cut(s)	581, 661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.