Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000282

Physical Location & Seq

Genomic Coordinates Reverse (-)

21727660 .. 21728295

Gene Structure 636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0212000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGCTCTAGTTAGTAGCTTCACGCCAAAGACGACCATGGTCCAGATGTTTCCCACTAATTCCAAGCCTTGCATCCTGCAGAATAAGAACGTTGCAATTATAAGATGTGCTGTCAAAAGGCCAGGAATTAATACAGGGAGCCCTCCTCAAATCAACCAGGTACTTAGAGTCGCTGACCGGAGTTTGAGAACAGATCAGGTGGTTGGTCTCAGAAGATTGAATAATGGAGAAGATGGAAAAGCAAATGCAGGAAATACTGTTGTCGATGATGTTAGTAATACAACCAAGACTGCTGATGCTACGTCTACTACAATAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

106

Amino Acids

11.34

Weight (kDa)

10.03

Isoelectric Point (pI)

33.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000282)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12350 FvH4_5g12380 FvH4_5g12392 FvH4_5g12400 FvH4_5g12430
malus_domestica	MD06G1213300.v1.1 MD06G1213500.v1.1 MD06G1213700.v1.1 MD06G1213800.v1.1 MD06G1213900.v1.1 MD06G1214000.v1.1 MD06G1214400.v1.1 MD14G1224300.v1.1 MD14G1224400.v1.1 MD14G1224600.v1.1 MD14G1224700.v1.1 MD14G1224800.v1.1 MD14G1224900.v1.1 MD14G1225100.v1.1 MD14G1225400.v1.1
prunus_persica	Prupe.5G219700_v2.0.a1 Prupe.5G219800_v2.0.a1 Prupe.5G219900_v2.0.a1 Prupe.8G078500_v2.0.a1
pyrus_communis	pycom06g19100 pycom14g18590 pycom14g18600 pycom14g18610 pycom14g18660
rosa_chinensis	RchiOBHm_Chr0c12g0499591 RchiOBHm_Chr2g0140591 RchiOBHm_Chr2g0140631 RchiOBHm_Chr2g0140641 RchiOBHm_Chr2g0140651 RchiOBHm_Chr4g0417991 RchiOBHm_Chr4g0418001 RchiOBHm_Chr4g0418101 RchiOBHm_Chr4g0418111 RchiOBHm_Chr4g0418121 RchiOBHm_Chr6g0280191 RchiOBHm_Chr6g0280241 RchiOBHm_Chr6g0280251 RchiOBHm_Chr7g0185031 RchiOBHm_Chr7g0185051 RchiOBHm_Chr7g0185081 RchiOBHm_Chr7g0185091 RchiOBHm_Chr7g0185111 RchiOBHm_Chr7g0185131 RchiOBHm_Chr7g0185151 RchiOBHm_Chr7g0185161 RchiOBHm_Chr7g0185191 RchiOBHm_Chr7g0222431
rosa_laevigata	RLG00000002061 RLG00000004934 RLG00000004935 RLG00000004937 RLG00000013071 RLG00000013077 RLG00000019621 RLG00000019881 RLG00000019884 RLG00000019887 RLG00000019888 RLG00000028839
rosa_multiflora	Rmu_co8014370.1_g000001 Rmu_co8334683.1_g000001 Rmu_co8440383.1_g000001 Rmu_sc0002826.1_g000008 Rmu_sc0002826.1_g000009 Rmu_sc0002826.1_g000030 Rmu_sc0004483.1_g000005 Rmu_sc0004638.1_g000003 Rmu_sc0004638.1_g000004 Rmu_sc0005756.1_g000003 Rmu_sc0006493.1_g000023 Rmu_sc0006493.1_g000024 Rmu_sc0007137.1_g000017 Rmu_sc0008496.1_g000022 Rmu_sc0008769.1_g000003 Rmu_sc0013612.1_g000026 Rmu_sc0013864.1_g000001 Rmu_sc0013864.1_g000007 Rmu_sc0013864.1_g000008 Rmu_sc0030128.1_g000001 Rmu_sc0041660.1_g000001 Rmu_ssc0000289.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104640 Rroxscaffold_3G00253970 Rroxscaffold_3G00269170 Rroxscaffold_3G00269200 Rroxscaffold_3G00269210 Rroxscaffold_3G00269220 Rroxscaffold_3G00269230 Rroxscaffold_7G00188320
rosa_rugosa	Rorug01G0052300 Rorug05G0212000 Rorug06G0130700 Rorug06G0131100 Rorug06G0466200 Rorug06G0466300 Rorug06G0466400 Rorug06G0466500 Rorug06G0466700 Rorug07G0208500 Rorug07G0294600
rosa_samantha	Rh4AG137600 Rh6DG237300 Rh6DG237800 Rh7AG076200 Rh7AG076300 Rh7AG076500 Rh7AG076600 Rh7AG350700 Rh7BG070800 Rh7BG070900 Rh7BG071000 Rh7BG071100
rosa_wichuraiana	Rw6G020990 Rw6G021010 Rw7G005900 Rw7G005910 Rw7G005920 Rw7G005940 Rw7G005950 Rw7G005970 Rw7G029600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	101
AccI	GTMKAC	1 cut(s)	305
AclI	AACGTT	1 cut(s)	90
AfaI	GTAC	1 cut(s)	162
AgsI	TTSAA	1 cut(s)	220
AjnI	CCWGG	2 cut(s)	121, 156
AluBI	AGCT	1 cut(s)	18
AluI	AGCT	1 cut(s)	18
Alw26I	GTCTC	1 cut(s)	212
AoxI	GGCC	1 cut(s)	119
AseI	ATTAAT	1 cut(s)	129
AspS9I	GGNCC	1 cut(s)	40
AvaII	GGWCC	1 cut(s)	40
BanII	GRGCYC	1 cut(s)	143
BccI	CCATC	1 cut(s)	227
BciT130I	CCWGG	2 cut(s)	123, 158
BcoDI	GTCTC	1 cut(s)	212
BfaI	CTAG	1 cut(s)	8
BfmI	CTRYAG	1 cut(s)	77
Bme1390I	CCNGG	2 cut(s)	123, 158
Bme18I	GGWCC	1 cut(s)	40
BmgT120I	GGNCC	1 cut(s)	40
BmiI	GGNNCC	1 cut(s)	140
BmrFI	CCNGG	2 cut(s)	123, 158
BmsI	GCATC	2 cut(s)	81, 286
BoxI	GACNNNNGTC	1 cut(s)	38
BplI	GAGNNNNNCTC	2 cut(s)	130, 162
BsaI	GGTCTC	1 cut(s)	212
BsaJI	CCNNGG	1 cut(s)	36
BsaWI	WCCGGW	1 cut(s)	177
BseBI	CCWGG	2 cut(s)	123, 158
BseDI	CCNNGG	1 cut(s)	36
BseGI	GGATG	1 cut(s)	72
BseMII	CTCAG	1 cut(s)	223
BseRI	GAGGAG	1 cut(s)	135
BshFI	GGCC	1 cut(s)	121
BsiSI	CCGG	1 cut(s)	178
BsmAI	GTCTC	1 cut(s)	212
BsnI	GGCC	1 cut(s)	121
Bso31I	GGTCTC	1 cut(s)	212
Bsp1286I	GDGCHC	1 cut(s)	143
Bsp143I	GATC	1 cut(s)	193
Bsp19I	CCATGG	1 cut(s)	36
BspANI	GGCC	1 cut(s)	121
BspCNI	CTCAG	1 cut(s)	222
BspLI	GGNNCC	1 cut(s)	140
BspMAI	CTGCAG	1 cut(s)	81
BspTNI	GGTCTC	1 cut(s)	212
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	1 cut(s)	193
BssT1I	CCWWGG	1 cut(s)	36
Bst2UI	CCWGG	2 cut(s)	123, 158
Bst4CI	ACNGT	1 cut(s)	259
BstDEI	CTNAG	2 cut(s)	164, 209
BstDSI	CCRYGG	1 cut(s)	36
BstF5I	GGATG	1 cut(s)	72
BstKTI	GATC	1 cut(s)	196
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	1 cut(s)	193
BstNI	CCWGG	2 cut(s)	123, 158
BstPAI	GACNNNNGTC	1 cut(s)	38
BstSCI	CCNGG	2 cut(s)	121, 156
BstSFI	CTRYAG	1 cut(s)	77
BsuRI	GGCC	1 cut(s)	121
BtgI	CCRYGG	1 cut(s)	36
BtsCI	GGATG	1 cut(s)	72
Cfr13I	GGNCC	1 cut(s)	40
CsiI	ACCWGGT	1 cut(s)	156
Csp6I	GTAC	1 cut(s)	161
CviAII	CATG	2 cut(s)	37, 318
CviJI	RGCY	5 cut(s)	5, 18, 67, 121, 141
CviKI_1	RGCY	5 cut(s)	5, 18, 67, 121, 141
CviQI	GTAC	1 cut(s)	161
DdeI	CTNAG	2 cut(s)	164, 209
DpnI	GATC	1 cut(s)	195
DpnII	GATC	1 cut(s)	193
Eco130I	CCWWGG	1 cut(s)	36
Eco24I	GRGCYC	1 cut(s)	143
Eco31I	GGTCTC	1 cut(s)	212
Eco47I	GGWCC	1 cut(s)	40
EcoRII	CCWGG	2 cut(s)	121, 156
EcoT14I	CCWWGG	1 cut(s)	36
EcoT38I	GRGCYC	1 cut(s)	143
ErhI	CCWWGG	1 cut(s)	36
FaeI	CATG	2 cut(s)	40, 321
FaiI	YATR	3 cut(s)	38, 101, 319
FatI	CATG	2 cut(s)	36, 317
FblI	GTMKAC	1 cut(s)	305
FokI	GGATG	1 cut(s)	59
FriOI	GRGCYC	1 cut(s)	143
FspBI	CTAG	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	121
HapII	CCGG	1 cut(s)	178
Hin1II	CATG	2 cut(s)	40, 321
HinfI	GANTC	1 cut(s)	168
HpaII	CCGG	1 cut(s)	178
Hpy166II	GTNNAC	1 cut(s)	306
Hpy188I	TCNGA	1 cut(s)	212
Hpy188III	TCNNGA	1 cut(s)	43
Hpy8I	GTNNAC	1 cut(s)	306
HpyCH4III	ACNGT	1 cut(s)	259
HpyCH4IV	ACGT	2 cut(s)	90, 302
HpyCH4V	TGCA	4 cut(s)	72, 79, 95, 248
HpyF3I	CTNAG	2 cut(s)	164, 209
HpySE526I	ACGT	2 cut(s)	90, 302
Hsp92II	CATG	2 cut(s)	40, 321
Kzo9I	GATC	1 cut(s)	193
LmnI	GCTCC	1 cut(s)	138
LweI	GCATC	2 cut(s)	81, 286
MabI	ACCWGGT	1 cut(s)	156
MaeI	CTAG	1 cut(s)	8
MaeII	ACGT	2 cut(s)	90, 302
MalI	GATC	1 cut(s)	195
MboI	GATC	1 cut(s)	193
MboII	GAAGA	2 cut(s)	225, 242
MhlI	GDGCHC	1 cut(s)	143
MluCI	AATT	3 cut(s)	58, 96, 126
MlyI	GAGTC	1 cut(s)	177
MnlI	CCTC	2 cut(s)	153, 156
MseI	TTAA	1 cut(s)	129
MspI	CCGG	1 cut(s)	178
MspR9I	CCNGG	2 cut(s)	123, 158
MvaI	CCWGG	2 cut(s)	123, 158
NcoI	CCATGG	1 cut(s)	36
NdeII	GATC	1 cut(s)	193
NlaIII	CATG	2 cut(s)	40, 321
NlaIV	GGNNCC	1 cut(s)	140
PcsI	WCGNNNNNNNCGW	1 cut(s)	29
PleI	GAGTC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	176
PshAI	GACNNNNGTC	1 cut(s)	38
PshBI	ATTAAT	1 cut(s)	129
PsiI	TTATAA	1 cut(s)	101
Psp1406I	AACGTT	1 cut(s)	90
Psp6I	CCWGG	2 cut(s)	121, 156
PspGI	CCWGG	2 cut(s)	121, 156
PspN4I	GGNNCC	1 cut(s)	140
PspPI	GGNCC	1 cut(s)	40
PstI	CTGCAG	1 cut(s)	81
RsaI	GTAC	1 cut(s)	162
RsaNI	GTAC	1 cut(s)	161
SaqAI	TTAA	1 cut(s)	129
Sau3AI	GATC	1 cut(s)	193
Sau96I	GGNCC	1 cut(s)	40
SchI	GAGTC	1 cut(s)	177
ScrFI	CCNGG	2 cut(s)	123, 158
SduI	GDGCHC	1 cut(s)	143
SetI	ASST	5 cut(s)	20, 93, 162, 201, 305
SexAI	ACCWGGT	1 cut(s)	156
SfaNI	GCATC	2 cut(s)	81, 286
SfcI	CTRYAG	1 cut(s)	77
SinI	GGWCC	1 cut(s)	40
Sse9I	AATT	3 cut(s)	58, 96, 126
SspMI	CTAG	1 cut(s)	8
StyD4I	CCNGG	2 cut(s)	121, 156
StyI	CCWWGG	1 cut(s)	36
TaaI	ACNGT	1 cut(s)	259
TaiI	ACGT	2 cut(s)	93, 305
TaqI	TCGA	1 cut(s)	264
TasI	AATT	3 cut(s)	58, 96, 126
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
VpaK11BI	GGWCC	1 cut(s)	40
VspI	ATTAAT	1 cut(s)	129
XmiI	GTMKAC	1 cut(s)	305
XspI	CTAG	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.