Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000282

Physical Location & Seq

Genomic Coordinates Reverse (-)

63786223 .. 63788843

Gene Structure 2621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004934

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1515 bp

ATGAGTCCTTCAACAATAATAGCCATCCTCCTGGTTCTCCTCACATGCCTTTGGTCACTCATCTCTGCTTCTTCTAAATCAAAACACAAAAAACTACCACCCGGCCCTCGGTCACTGCCAATAATCGGAAATCTCCACATGCTAGGTGACCTCCCCCATCGAAGCCTCCAACACTTGGCCAAAAAATATGGACACATCATGTCCATCCGTCTAGGCAGTGTTCCGACCATAGTAGTCTCCTCCCCAAAAGCCGCAGAGCTATTCCTCAAAACTCATGACACTAATTTCGCCAGCCGGCCCAAAATCCAAGCCTCGGAGTACATATCCTACGGCACAAAGGGCATGGCCTTTTCCGAATATGGTCCCTATTGGCGCCATGTGAGGAAGCTCTGTACGCTTCAGCTTTTCTGTCCAGCAAAAATGGAGGCTTTCGCGCCGCTGAGAAAGGATGAGCTGGGAGTGCTGGTAAGAAAGCTCAAGAAAGCTGCAGAGGAAGGTGGAGTTGTGGATGTTAGTGAGGATATTGGTGTGATGAATGAGGACATTACGTACAGGATGGTATTGGGTTGTAAAAGGGATGATCGGTTTGATTTGAAAGCCATTGTTGAGGAAACGTTTTTCTTGGCTGGGGCTTTCAATATATCTGATTTTGTTCCTTCCCTTGCTGCACTTGATATTCAGGGGTTGACTAAGCGAATGAAGAAAGTTAGTAAGACTATTGATCAGCTCTTGGAGAAGATAATCGACGACCATGAACGAGTTGCTAAAACTAGGAGTGGGAAACAAATCCAGCATGAGCACTTTGTAGATGTCTTGCTTTCGTTAACGAACCAACCGTTGAACCCGAATGATGAGCAAGTTCATTTTCTTGATCGAACAAATGTGAAAGCTATATTACTAGACATGATCACGGCGGCTTTTGATACTTCGGCCACATCGGTTGTTTGGAGCCTTTCCGAGCTCTTGAGGCATCCAAGGATCATGAAAAATCTCCAAGAAGAGCTCCAAACTGTGGTTGGTATGGACCGAATGGTGAAAGAGACTGATTTGCCGAAGCTGGAATACTTGAGTATGGTGGTCAAAGAGAGCTTGAGACTACACCCGGTGGCACCATTACTAGTCCCACATGAATCTATCGAGGACATTACAATTGATGGATACGACATTCCCAGGAAGTCGCGAATCATAGTGAATTTCTGGAGCATTGGAAGAGATCCTAATGTTTGGTCGGAAAATGTTGAGGAATTTTATCCTGAAAGGTTCATGAACAGCAATATAGACCTCCGGGGACATGACTTTCAGCTCATCCCATTTGGGTCCGGCCGAAGAGGTTGTCCAGGTCTGCAATTAGGGCTAACCACAGTTCGGCTAGTTCTGGCACAGCTGGTGCACTGCTTTAACTGGGAGCTCCCAACCAGCGTGCTACCTCAAGACTTGGACATGGCTGAGAAATTCGGTTTATCAATGTCCAAGGCCAAACACTTGCTTGCCAAGCCGACCTACCGTCTTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

505

Amino Acids

56.92

Weight (kDa)

8.69

Isoelectric Point (pI)

42.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	33 - 493	8.6e-103	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000282)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12350 FvH4_5g12380 FvH4_5g12392 FvH4_5g12400 FvH4_5g12430
malus_domestica	MD06G1213300.v1.1 MD06G1213500.v1.1 MD06G1213700.v1.1 MD06G1213800.v1.1 MD06G1213900.v1.1 MD06G1214000.v1.1 MD06G1214400.v1.1 MD14G1224300.v1.1 MD14G1224400.v1.1 MD14G1224600.v1.1 MD14G1224700.v1.1 MD14G1224800.v1.1 MD14G1224900.v1.1 MD14G1225100.v1.1 MD14G1225400.v1.1
prunus_persica	Prupe.5G219700_v2.0.a1 Prupe.5G219800_v2.0.a1 Prupe.5G219900_v2.0.a1 Prupe.8G078500_v2.0.a1
pyrus_communis	pycom06g19100 pycom14g18590 pycom14g18600 pycom14g18610 pycom14g18660
rosa_chinensis	RchiOBHm_Chr0c12g0499591 RchiOBHm_Chr2g0140591 RchiOBHm_Chr2g0140631 RchiOBHm_Chr2g0140641 RchiOBHm_Chr2g0140651 RchiOBHm_Chr4g0417991 RchiOBHm_Chr4g0418001 RchiOBHm_Chr4g0418101 RchiOBHm_Chr4g0418111 RchiOBHm_Chr4g0418121 RchiOBHm_Chr6g0280191 RchiOBHm_Chr6g0280241 RchiOBHm_Chr6g0280251 RchiOBHm_Chr7g0185031 RchiOBHm_Chr7g0185051 RchiOBHm_Chr7g0185081 RchiOBHm_Chr7g0185091 RchiOBHm_Chr7g0185111 RchiOBHm_Chr7g0185131 RchiOBHm_Chr7g0185151 RchiOBHm_Chr7g0185161 RchiOBHm_Chr7g0185191 RchiOBHm_Chr7g0222431
rosa_laevigata	RLG00000002061 RLG00000004934 RLG00000004935 RLG00000004937 RLG00000013071 RLG00000013077 RLG00000019621 RLG00000019881 RLG00000019884 RLG00000019887 RLG00000019888 RLG00000028839
rosa_multiflora	Rmu_co8014370.1_g000001 Rmu_co8334683.1_g000001 Rmu_co8440383.1_g000001 Rmu_sc0002826.1_g000008 Rmu_sc0002826.1_g000009 Rmu_sc0002826.1_g000030 Rmu_sc0004483.1_g000005 Rmu_sc0004638.1_g000003 Rmu_sc0004638.1_g000004 Rmu_sc0005756.1_g000003 Rmu_sc0006493.1_g000023 Rmu_sc0006493.1_g000024 Rmu_sc0007137.1_g000017 Rmu_sc0008496.1_g000022 Rmu_sc0008769.1_g000003 Rmu_sc0013612.1_g000026 Rmu_sc0013864.1_g000001 Rmu_sc0013864.1_g000007 Rmu_sc0013864.1_g000008 Rmu_sc0030128.1_g000001 Rmu_sc0041660.1_g000001 Rmu_ssc0000289.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104640 Rroxscaffold_3G00253970 Rroxscaffold_3G00269170 Rroxscaffold_3G00269200 Rroxscaffold_3G00269210 Rroxscaffold_3G00269220 Rroxscaffold_3G00269230 Rroxscaffold_7G00188320
rosa_rugosa	Rorug01G0052300 Rorug05G0212000 Rorug06G0130700 Rorug06G0131100 Rorug06G0466200 Rorug06G0466300 Rorug06G0466400 Rorug06G0466500 Rorug06G0466700 Rorug07G0208500 Rorug07G0294600
rosa_samantha	Rh4AG137600 Rh6DG237300 Rh6DG237800 Rh7AG076200 Rh7AG076300 Rh7AG076500 Rh7AG076600 Rh7AG350700 Rh7BG070800 Rh7BG070900 Rh7BG071000 Rh7BG071100
rosa_wichuraiana	Rw6G020990 Rw6G021010 Rw7G005900 Rw7G005910 Rw7G005920 Rw7G005940 Rw7G005950 Rw7G005970 Rw7G029600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	372, 1108
AccB7I	CCANNNNNTGG	2 cut(s)	175, 1012
AccII	CGCG	2 cut(s)	434, 1180
AciI	CCGC	3 cut(s)	252, 437, 914
AclI	AACGTT	1 cut(s)	614
AclWI	GGATC	2 cut(s)	986, 1208
AcoI	YGGCCR	3 cut(s)	177, 930, 1321
AcsI	RAATTY	3 cut(s)	1192, 1244, 1451
AcuI	CTGAAG	1 cut(s)	383
AcyI	GRCGYC	1 cut(s)	373
AdeI	CACNNNGTG	1 cut(s)	1105
AfaI	GTAC	3 cut(s)	320, 394, 551
AfiI	CCNNNNNNNGG	6 cut(s)	108, 125, 175, 313, 1012, 1365
AgsI	TTSAA	4 cut(s)	12, 595, 637, 841
AhdI	GACNNNNNGTC	1 cut(s)	1503
AhlI	ACTAGT	1 cut(s)	1117
AjnI	CCWGG	3 cut(s)	30, 1169, 1336
Alw21I	GWGCWC	5 cut(s)	801, 963, 1005, 1392, 1410
Alw26I	GTCTC	3 cut(s)	241, 1034, 1087
Alw44I	GTGCAC	1 cut(s)	1388
AlwI	GGATC	2 cut(s)	986, 1208
AoxI	GGCC	7 cut(s)	103, 177, 296, 345, 930, 1321, 1473
ApaLI	GTGCAC	1 cut(s)	1388
ApeKI	GCWGC	2 cut(s)	485, 665
ApoI	RAATTY	3 cut(s)	1192, 1244, 1451
ArsI	GACNNNNNNTTYG	4 cut(s)	269, 301, 1318, 1350
AspLEI	GCGC	2 cut(s)	375, 436
AspS9I	GGNCC	5 cut(s)	104, 297, 362, 1024, 1317
AsuC2I	CCSGG	3 cut(s)	102, 1103, 1286
AsuHPI	GGTGA	2 cut(s)	158, 1045
AvaII	GGWCC	3 cut(s)	362, 1024, 1317
BaeGI	GKGCMC	1 cut(s)	1392
BalI	TGGCCA	1 cut(s)	179
BanI	GGYRCC	2 cut(s)	372, 1108
BanII	GRGCYC	3 cut(s)	963, 1005, 1410
BarI	GAAGNNNNNNTAC	2 cut(s)	1046, 1078
BbsI	GAAGAC	1 cut(s)	1499
Bbv12I	GWGCWC	5 cut(s)	801, 963, 1005, 1392, 1410
BbvI	GCAGC	2 cut(s)	472, 652
BccI	CCATC	5 cut(s)	32, 165, 212, 550, 1148
BceAI	ACGGC	2 cut(s)	346, 927
BciT130I	CCWGG	3 cut(s)	32, 1171, 1338
BciVI	GTATCC	1 cut(s)	1151
BclI	TGATCA	2 cut(s)	721, 906
BcnI	CCSGG	3 cut(s)	102, 1103, 1286
BcoDI	GTCTC	3 cut(s)	241, 1034, 1087
BcuI	ACTAGT	1 cut(s)	1117
BfaI	CTAG	6 cut(s)	143, 212, 771, 899, 1118, 1370
BfmI	CTRYAG	2 cut(s)	486, 1511
BfoI	RGCGCY	1 cut(s)	376
BfuI	GTATCC	1 cut(s)	1151
BisI	GCNGC	5 cut(s)	252, 437, 486, 666, 915
BlsI	GCNGC	5 cut(s)	253, 438, 487, 667, 916
Bme1390I	CCNGG	6 cut(s)	32, 102, 1103, 1171, 1286, 1338
Bme18I	GGWCC	3 cut(s)	362, 1024, 1317
BmeRI	GACNNNNNGTC	1 cut(s)	1503
BmgT120I	GGNCC	5 cut(s)	104, 297, 362, 1024, 1317
BmiI	GGNNCC	5 cut(s)	364, 374, 950, 1110, 1318
BmrFI	CCNGG	6 cut(s)	32, 102, 1103, 1171, 1286, 1338
BmrI	ACTGGG	1 cut(s)	1411
BmsI	GCATC	1 cut(s)	979
BmuI	ACTGGG	1 cut(s)	1411
BpiI	GAAGAC	1 cut(s)	1499
BpmI	CTGGAG	1 cut(s)	1219
BpuEI	CTTGAG	5 cut(s)	461, 985, 1087, 1111, 1413
BpuMI	CCSGG	3 cut(s)	102, 1103, 1286
BsaAI	YACGTR	1 cut(s)	549
BsaHI	GRCGYC	1 cut(s)	373
BsaJI	CCNNGG	6 cut(s)	107, 312, 974, 1169, 1285, 1470
BsaXI	ACNNNNNCTCC	2 cut(s)	450, 480
Bsc4I	CCNNNNNNNGG	6 cut(s)	108, 125, 175, 313, 1012, 1365
Bse118I	RCCGGY	1 cut(s)	294
Bse1I	ACTGG	1 cut(s)	1406
BseBI	CCWGG	3 cut(s)	32, 1171, 1338
BseDI	CCNNGG	6 cut(s)	107, 312, 974, 1169, 1285, 1470
BseGI	GGATG	8 cut(s)	24, 204, 454, 514, 561, 583, 970, 1305
BseLI	CCNNNNNNNGG	6 cut(s)	108, 125, 175, 313, 1012, 1365
BseMII	CTCAG	2 cut(s)	431, 1437
BseNI	ACTGG	1 cut(s)	1406
BseRI	GAGGAG	2 cut(s)	29, 229
BseSI	GKGCMC	1 cut(s)	1392
BseX3I	CGGCCG	1 cut(s)	1321
BseXI	GCAGC	2 cut(s)	472, 652
BseYI	CCCAGC	2 cut(s)	454, 626
BsgI	GTGCAG	1 cut(s)	651
Bsh1236I	CGCG	2 cut(s)	434, 1180
Bsh1285I	CGRYCG	1 cut(s)	1324
BshFI	GGCC	7 cut(s)	105, 179, 298, 347, 932, 1323, 1475
BshNI	GGYRCC	2 cut(s)	372, 1108
BsiEI	CGRYCG	1 cut(s)	1324
BsiHKAI	GWGCWC	5 cut(s)	801, 963, 1005, 1392, 1410
BsiSI	CCGG	5 cut(s)	102, 295, 1103, 1285, 1320
BslFI	GGGAC	3 cut(s)	348, 1106, 1302
BslI	CCNNNNNNNGG	6 cut(s)	108, 125, 175, 313, 1012, 1365
BsmAI	GTCTC	3 cut(s)	241, 1034, 1087
BsmFI	GGGAC	3 cut(s)	348, 1106, 1302
BsnI	GGCC	7 cut(s)	105, 179, 298, 347, 932, 1323, 1475
Bsp1286I	GDGCHC	5 cut(s)	801, 963, 1005, 1392, 1410
Bsp143I	GATC	6 cut(s)	580, 721, 871, 906, 978, 1213
Bsp68I	TCGCGA	1 cut(s)	1180
BspACI	CCGC	3 cut(s)	252, 437, 914
BspANI	GGCC	7 cut(s)	105, 179, 298, 347, 932, 1323, 1475
BspCNI	CTCAG	2 cut(s)	432, 1438
BspFNI	CGCG	2 cut(s)	434, 1180
BspHI	TCATGA	3 cut(s)	274, 981, 1263
BspLI	GGNNCC	5 cut(s)	364, 374, 950, 1110, 1318
BspMAI	CTGCAG	1 cut(s)	490
BspPI	GGATC	2 cut(s)	986, 1208
BspQI	GCTCTTC	1 cut(s)	993
BspT107I	GGYRCC	2 cut(s)	372, 1108
BsrFI	RCCGGY	1 cut(s)	294
BsrI	ACTGG	1 cut(s)	1406
BssAI	RCCGGY	1 cut(s)	294
BssECI	CCNNGG	6 cut(s)	107, 312, 974, 1169, 1285, 1470
BssMI	GATC	6 cut(s)	580, 721, 871, 906, 978, 1213
BssNI	GRCGYC	1 cut(s)	373
BssT1I	CCWWGG	2 cut(s)	974, 1470
Bst2UI	CCWGG	3 cut(s)	32, 1171, 1338
Bst4CI	ACNGT	4 cut(s)	837, 1012, 1363, 1505
Bst6I	CTCTTC	3 cut(s)	993, 1204, 1321
BstACI	GRCGYC	1 cut(s)	373
BstBAI	YACGTR	1 cut(s)	549
BstC8I	GCNNGC	4 cut(s)	292, 296, 1421, 1488
BstDEI	CTNAG	3 cut(s)	440, 690, 1446
BstEII	GGTNACC	1 cut(s)	146
BstF5I	GGATG	8 cut(s)	24, 204, 454, 514, 561, 583, 970, 1305
BstFNI	CGCG	2 cut(s)	434, 1180
BstH2I	RGCGCY	1 cut(s)	376
BstHHI	GCGC	2 cut(s)	375, 436
BstKTI	GATC	6 cut(s)	583, 724, 874, 909, 981, 1216
BstMAI	GTCTC	3 cut(s)	241, 1034, 1087
BstMBI	GATC	6 cut(s)	580, 721, 871, 906, 978, 1213
BstMCI	CGRYCG	1 cut(s)	1324
BstMWI	GCNNNNNNNGC	6 cut(s)	339, 394, 460, 967, 1351, 1492
BstNI	CCWGG	3 cut(s)	32, 1171, 1338
BstNSI	RCATGY	2 cut(s)	48, 142
BstPI	GGTNACC	1 cut(s)	146
BstSCI	CCNGG	6 cut(s)	30, 100, 1101, 1169, 1284, 1336
BstSFI	CTRYAG	2 cut(s)	486, 1511
BstSLI	GKGCMC	1 cut(s)	1392
BstSNI	TACGTA	1 cut(s)	549
BstUI	CGCG	2 cut(s)	434, 1180
BstV1I	GCAGC	2 cut(s)	472, 652
BstV2I	GAAGAC	1 cut(s)	1499
BstX2I	RGATCY	1 cut(s)	1213
BstXI	CCANNNNNNTGG	1 cut(s)	31
BstYI	RGATCY	1 cut(s)	1213
BstZI	CGGCCG	1 cut(s)	1321
BsuI	GTATCC	1 cut(s)	1151
BsuRI	GGCC	7 cut(s)	105, 179, 298, 347, 932, 1323, 1475
BtsCI	GGATG	8 cut(s)	24, 204, 454, 514, 561, 583, 970, 1305
BtsI	GCAGTG	3 cut(s)	113, 223, 1390
BtsIMutI	CAGTG	3 cut(s)	113, 223, 1390
BtuMI	TCGCGA	1 cut(s)	1180
Cac8I	GCNNGC	4 cut(s)	292, 296, 1421, 1488
CciI	TCATGA	3 cut(s)	274, 981, 1263
CfoI	GCGC	2 cut(s)	375, 436
Cfr10I	RCCGGY	1 cut(s)	294
Cfr13I	GGNCC	5 cut(s)	104, 297, 362, 1024, 1317
Csp6I	GTAC	3 cut(s)	319, 393, 550
CspCI	CAANNNNNGTGG	2 cut(s)	922, 957
CviQI	GTAC	3 cut(s)	319, 393, 550
DdeI	CTNAG	3 cut(s)	440, 690, 1446
DinI	GGCGCC	1 cut(s)	374
DpnI	GATC	6 cut(s)	582, 723, 873, 908, 980, 1215
DpnII	GATC	6 cut(s)	580, 721, 871, 906, 978, 1213
DraIII	CACNNNGTG	1 cut(s)	1105
DriI	GACNNNNNGTC	1 cut(s)	1503
EaeI	YGGCCR	3 cut(s)	177, 930, 1321
EagI	CGGCCG	1 cut(s)	1321
Eam1104I	CTCTTC	3 cut(s)	993, 1204, 1321
Eam1105I	GACNNNNNGTC	1 cut(s)	1503
EarI	CTCTTC	3 cut(s)	993, 1204, 1321
Ecl136II	GAGCTC	3 cut(s)	961, 1003, 1408
EclXI	CGGCCG	1 cut(s)	1321
Eco105I	TACGTA	1 cut(s)	549
Eco130I	CCWWGG	2 cut(s)	974, 1470
Eco24I	GRGCYC	3 cut(s)	963, 1005, 1410
Eco47I	GGWCC	3 cut(s)	362, 1024, 1317
Eco52I	CGGCCG	1 cut(s)	1321
Eco53kI	GAGCTC	3 cut(s)	961, 1003, 1408
Eco57I	CTGAAG	1 cut(s)	383
Eco91I	GGTNACC	1 cut(s)	146
EcoICRI	GAGCTC	3 cut(s)	961, 1003, 1408
EcoO65I	GGTNACC	1 cut(s)	146
EcoRII	CCWGG	3 cut(s)	30, 1169, 1336
EcoT14I	CCWWGG	2 cut(s)	974, 1470
EcoT38I	GRGCYC	3 cut(s)	963, 1005, 1410
EgeI	GGCGCC	1 cut(s)	374
EheI	GGCGCC	1 cut(s)	374
ErhI	CCWWGG	2 cut(s)	974, 1470
FaqI	GGGAC	3 cut(s)	348, 1106, 1302
FbaI	TGATCA	2 cut(s)	721, 906
Fnu4HI	GCNGC	5 cut(s)	252, 437, 486, 666, 915
FokI	GGATG	8 cut(s)	11, 191, 461, 521, 568, 590, 957, 1292
FriOI	GRGCYC	3 cut(s)	963, 1005, 1410
Fsp4HI	GCNGC	5 cut(s)	252, 437, 486, 666, 915
FspBI	CTAG	6 cut(s)	143, 212, 771, 899, 1118, 1370
GlaI	GCGC	2 cut(s)	374, 435
GluI	GCNGC	5 cut(s)	252, 437, 486, 666, 915
GsaI	CCCAGC	2 cut(s)	458, 630
GsuI	CTGGAG	1 cut(s)	1219
HaeII	RGCGCY	1 cut(s)	376
HaeIII	GGCC	7 cut(s)	105, 179, 298, 347, 932, 1323, 1475
HapII	CCGG	5 cut(s)	102, 295, 1103, 1285, 1320
HhaI	GCGC	2 cut(s)	375, 436
Hin1I	GRCGYC	1 cut(s)	373
Hin6I	GCGC	2 cut(s)	373, 434
HinP1I	GCGC	2 cut(s)	373, 434
HincII	GTYRAC	2 cut(s)	687, 825
HindII	GTYRAC	2 cut(s)	687, 825
HinfI	GANTC	3 cut(s)	4, 1130, 1182
HpaI	GTTAAC	1 cut(s)	825
HpaII	CCGG	5 cut(s)	102, 295, 1103, 1285, 1320
HphI	GGTGA	2 cut(s)	158, 1045
Hpy166II	GTNNAC	3 cut(s)	687, 825, 1390
Hpy188I	TCNGA	7 cut(s)	128, 225, 316, 355, 646, 958, 1231
Hpy8I	GTNNAC	3 cut(s)	687, 825, 1390
Hpy99I	CGWCG	1 cut(s)	749
HpyAV	CCTTC	3 cut(s)	18, 488, 666
HpyCH4III	ACNGT	4 cut(s)	837, 1012, 1363, 1505
HpyCH4IV	ACGT	2 cut(s)	548, 614
HpyCH4V	TGCA	4 cut(s)	488, 668, 1345, 1390
HpyF10VI	GCNNNNNNNGC	6 cut(s)	339, 394, 460, 967, 1351, 1492
HpyF3I	CTNAG	3 cut(s)	440, 690, 1446
HpySE526I	ACGT	2 cut(s)	548, 614
Hsp92I	GRCGYC	1 cut(s)	373
HspAI	GCGC	2 cut(s)	373, 434
KasI	GGCGCC	1 cut(s)	372
KroI	GCCGGC	1 cut(s)	294
KroNI	GCCGGC	1 cut(s)	296
Ksp22I	TGATCA	2 cut(s)	721, 906
KspAI	GTTAAC	1 cut(s)	825
Kzo9I	GATC	6 cut(s)	580, 721, 871, 906, 978, 1213
LguI	GCTCTTC	1 cut(s)	993
LmnI	GCTCC	5 cut(s)	948, 1008, 1200, 1405, 1413
Lsp1109I	GCAGC	2 cut(s)	472, 652
LweI	GCATC	1 cut(s)	979
MaeI	CTAG	6 cut(s)	143, 212, 771, 899, 1118, 1370
MaeII	ACGT	2 cut(s)	548, 614
MaeIII	GTNAC	3 cut(s)	54, 111, 146
MalI	GATC	6 cut(s)	582, 723, 873, 908, 980, 1215
MboI	GATC	6 cut(s)	580, 721, 871, 906, 978, 1213
MboII	GAAGA	7 cut(s)	63, 712, 748, 1010, 1221, 1338, 1499
MfeI	CAATTG	1 cut(s)	1149
MflI	RGATCY	1 cut(s)	1213
MhlI	GDGCHC	5 cut(s)	801, 963, 1005, 1392, 1410
MlsI	TGGCCA	1 cut(s)	179
MluCI	AATT	6 cut(s)	283, 1149, 1192, 1244, 1346, 1451
MluNI	TGGCCA	1 cut(s)	179
Mly113I	GGCGCC	1 cut(s)	373
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	3 cut(s)	193, 248, 1209
Mox20I	TGGCCA	1 cut(s)	179
MroNI	GCCGGC	1 cut(s)	294
MscI	TGGCCA	1 cut(s)	179
MseI	TTAA	2 cut(s)	824, 1398
Msp20I	TGGCCA	1 cut(s)	179
MspA1I	CMGCKG	2 cut(s)	439, 1384
MspI	CCGG	5 cut(s)	102, 295, 1103, 1285, 1320
MspR9I	CCNGG	6 cut(s)	32, 102, 1103, 1171, 1286, 1338
MunI	CAATTG	1 cut(s)	1149
MvaI	CCWGG	3 cut(s)	32, 1171, 1338
MvnI	CGCG	2 cut(s)	434, 1180
MwoI	GCNNNNNNNGC	6 cut(s)	339, 394, 460, 967, 1351, 1492
NaeI	GCCGGC	1 cut(s)	296
NarI	GGCGCC	1 cut(s)	373
NciI	CCSGG	3 cut(s)	102, 1103, 1286
NdeII	GATC	6 cut(s)	580, 721, 871, 906, 978, 1213
NgoMIV	GCCGGC	1 cut(s)	294
NlaIV	GGNNCC	5 cut(s)	364, 374, 950, 1110, 1318
NmuCI	GTSAC	3 cut(s)	54, 111, 146
NruI	TCGCGA	1 cut(s)	1180
NspI	RCATGY	2 cut(s)	48, 142
PagI	TCATGA	3 cut(s)	274, 981, 1263
PciSI	GCTCTTC	1 cut(s)	993
PcsI	WCGNNNNNNNCGW	1 cut(s)	833
PdiI	GCCGGC	1 cut(s)	296
PfeI	GAWTC	2 cut(s)	1130, 1182
PflMI	CCANNNNNTGG	2 cut(s)	175, 1012
PkrI	GCNGC	5 cut(s)	253, 438, 487, 667, 916
PleI	GAGTC	1 cut(s)	12
PluTI	GGCGCC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	12
Ppu21I	YACGTR	1 cut(s)	549
Psp124BI	GAGCTC	3 cut(s)	963, 1005, 1410
Psp1406I	AACGTT	1 cut(s)	614
Psp6I	CCWGG	3 cut(s)	30, 1169, 1336
PspEI	GGTNACC	1 cut(s)	146
PspFI	CCCAGC	2 cut(s)	454, 626
PspGI	CCWGG	3 cut(s)	30, 1169, 1336
PspN4I	GGNNCC	5 cut(s)	364, 374, 950, 1110, 1318
PspPI	GGNCC	5 cut(s)	104, 297, 362, 1024, 1317
PstI	CTGCAG	1 cut(s)	490
PsuI	RGATCY	1 cut(s)	1213
PvuII	CAGCTG	1 cut(s)	1384
RruI	TCGCGA	1 cut(s)	1180
RsaI	GTAC	3 cut(s)	320, 394, 551
RsaNI	GTAC	3 cut(s)	319, 393, 550
SacI	GAGCTC	3 cut(s)	963, 1005, 1410
SapI	GCTCTTC	1 cut(s)	993
SaqAI	TTAA	2 cut(s)	824, 1398
SatI	GCNGC	5 cut(s)	252, 437, 486, 666, 915
Sau3AI	GATC	6 cut(s)	580, 721, 871, 906, 978, 1213
Sau96I	GGNCC	5 cut(s)	104, 297, 362, 1024, 1317
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	6 cut(s)	32, 102, 1103, 1171, 1286, 1338
SduI	GDGCHC	5 cut(s)	801, 963, 1005, 1392, 1410
SfaNI	GCATC	1 cut(s)	979
SfcI	CTRYAG	2 cut(s)	486, 1511
SfoI	GGCGCC	1 cut(s)	374
SinI	GGWCC	3 cut(s)	362, 1024, 1317
SmlI	CTYRAG	5 cut(s)	476, 964, 1066, 1090, 1428
SmoI	CTYRAG	5 cut(s)	476, 964, 1066, 1090, 1428
SnaBI	TACGTA	1 cut(s)	549
SpeI	ACTAGT	1 cut(s)	1117
Sse9I	AATT	6 cut(s)	283, 1149, 1192, 1244, 1346, 1451
SsiI	CCGC	3 cut(s)	252, 437, 914
SspDI	GGCGCC	1 cut(s)	372
SspMI	CTAG	6 cut(s)	143, 212, 771, 899, 1118, 1370
SstI	GAGCTC	3 cut(s)	963, 1005, 1410
StyD4I	CCNGG	6 cut(s)	30, 100, 1101, 1169, 1284, 1336
StyI	CCWWGG	2 cut(s)	974, 1470
TaaI	ACNGT	4 cut(s)	837, 1012, 1363, 1505
TaiI	ACGT	2 cut(s)	551, 617
TaqI	TCGA	4 cut(s)	160, 744, 874, 1137
TaqII	GACCGA	2 cut(s)	99, 1041
TasI	AATT	6 cut(s)	283, 1149, 1192, 1244, 1346, 1451
TatI	WGTACW	1 cut(s)	318
TauI	GCSGC	3 cut(s)	254, 439, 917
TfiI	GAWTC	2 cut(s)	1130, 1182
Tru1I	TTAA	2 cut(s)	824, 1398
Tru9I	TTAA	2 cut(s)	824, 1398
TscAI	CASTG	3 cut(s)	120, 223, 1397
TseFI	GTSAC	3 cut(s)	54, 111, 146
TseI	GCWGC	2 cut(s)	485, 665
Tsp45I	GTSAC	3 cut(s)	54, 111, 146
TspDTI	ATGAA	8 cut(s)	548, 713, 768, 851, 998, 1143, 1252, 1280
TspGWI	ACGGA	1 cut(s)	197
TspRI	CASTG	3 cut(s)	120, 223, 1397
Van91I	CCANNNNNTGG	2 cut(s)	175, 1012
VneI	GTGCAC	1 cut(s)	1388
VpaK11BI	GGWCC	3 cut(s)	362, 1024, 1317
XapI	RAATTY	3 cut(s)	1192, 1244, 1451
XceI	RCATGY	2 cut(s)	48, 142
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1013
XspI	CTAG	6 cut(s)	143, 212, 771, 899, 1118, 1370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.