Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002826.1

Orthogroup ID

OG0000282

Physical Location & Seq

Genomic Coordinates Reverse (-)

40804 .. 41601

Gene Structure 798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002826.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

atgaaccatcaactcctggagaagataatagacgagcacgaacaagttgccaacactaggagtgggaaacaaggccatgcggactttgtagacgtgttgctttcgttaacgaaccaactgttaaacccgaatgatgagcaagtacactttcttgatcgaacaaatgtgaaagccatcttactagacatgatcacggcggcttttgatatttcagccacatcaattgtttggagcctttccgagctcttgaggcatccaaggatcatgaagaatctccaagaagagctccaaagtgtggttgttgcaccgttactactcccacatgaatccattgaggacattacaatcgatggatatgacattcccaagaagtcgcggatcatagtaaacatctggagcattggaagagatccaaatgtttggtttgaaaatgttgaggaattttatcctgaaaggttcttgaacgacaatatagacctccggggacatgactttcagctcatcccatttggatctgggcggagagggtgttcgggtatgcaattaggactaaccacagttcggttagttctggcacagctggtgcactgctttaactgggagatcccaaatggcttggtacctcaagacttggacatgtctgaggatttcggcttatcactgtcaaaagccaaacacttgcttgctaagccaacgtaccgtcttatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

236

Amino Acids

26.92

Weight (kDa)

5.21

Isoelectric Point (pI)

38.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000282)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12350 FvH4_5g12380 FvH4_5g12392 FvH4_5g12400 FvH4_5g12430
malus_domestica	MD06G1213300.v1.1 MD06G1213500.v1.1 MD06G1213700.v1.1 MD06G1213800.v1.1 MD06G1213900.v1.1 MD06G1214000.v1.1 MD06G1214400.v1.1 MD14G1224300.v1.1 MD14G1224400.v1.1 MD14G1224600.v1.1 MD14G1224700.v1.1 MD14G1224800.v1.1 MD14G1224900.v1.1 MD14G1225100.v1.1 MD14G1225400.v1.1
prunus_persica	Prupe.5G219700_v2.0.a1 Prupe.5G219800_v2.0.a1 Prupe.5G219900_v2.0.a1 Prupe.8G078500_v2.0.a1
pyrus_communis	pycom06g19100 pycom14g18590 pycom14g18600 pycom14g18610 pycom14g18660
rosa_chinensis	RchiOBHm_Chr0c12g0499591 RchiOBHm_Chr2g0140591 RchiOBHm_Chr2g0140631 RchiOBHm_Chr2g0140641 RchiOBHm_Chr2g0140651 RchiOBHm_Chr4g0417991 RchiOBHm_Chr4g0418001 RchiOBHm_Chr4g0418101 RchiOBHm_Chr4g0418111 RchiOBHm_Chr4g0418121 RchiOBHm_Chr6g0280191 RchiOBHm_Chr6g0280241 RchiOBHm_Chr6g0280251 RchiOBHm_Chr7g0185031 RchiOBHm_Chr7g0185051 RchiOBHm_Chr7g0185081 RchiOBHm_Chr7g0185091 RchiOBHm_Chr7g0185111 RchiOBHm_Chr7g0185131 RchiOBHm_Chr7g0185151 RchiOBHm_Chr7g0185161 RchiOBHm_Chr7g0185191 RchiOBHm_Chr7g0222431
rosa_laevigata	RLG00000002061 RLG00000004934 RLG00000004935 RLG00000004937 RLG00000013071 RLG00000013077 RLG00000019621 RLG00000019881 RLG00000019884 RLG00000019887 RLG00000019888 RLG00000028839
rosa_multiflora	Rmu_co8014370.1_g000001 Rmu_co8334683.1_g000001 Rmu_co8440383.1_g000001 Rmu_sc0002826.1_g000008 Rmu_sc0002826.1_g000009 Rmu_sc0002826.1_g000030 Rmu_sc0004483.1_g000005 Rmu_sc0004638.1_g000003 Rmu_sc0004638.1_g000004 Rmu_sc0005756.1_g000003 Rmu_sc0006493.1_g000023 Rmu_sc0006493.1_g000024 Rmu_sc0007137.1_g000017 Rmu_sc0008496.1_g000022 Rmu_sc0008769.1_g000003 Rmu_sc0013612.1_g000026 Rmu_sc0013864.1_g000001 Rmu_sc0013864.1_g000007 Rmu_sc0013864.1_g000008 Rmu_sc0030128.1_g000001 Rmu_sc0041660.1_g000001 Rmu_ssc0000289.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104640 Rroxscaffold_3G00253970 Rroxscaffold_3G00269170 Rroxscaffold_3G00269200 Rroxscaffold_3G00269210 Rroxscaffold_3G00269220 Rroxscaffold_3G00269230 Rroxscaffold_7G00188320
rosa_rugosa	Rorug01G0052300 Rorug05G0212000 Rorug06G0130700 Rorug06G0131100 Rorug06G0466200 Rorug06G0466300 Rorug06G0466400 Rorug06G0466500 Rorug06G0466700 Rorug07G0208500 Rorug07G0294600
rosa_samantha	Rh4AG137600 Rh6DG237300 Rh6DG237800 Rh7AG076200 Rh7AG076300 Rh7AG076500 Rh7AG076600 Rh7AG350700 Rh7BG070800 Rh7BG070900 Rh7BG071000 Rh7BG071100
rosa_wichuraiana	Rw6G020990 Rw6G021010 Rw7G005900 Rw7G005910 Rw7G005920 Rw7G005940 Rw7G005950 Rw7G005970 Rw7G029600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	619
AccB1I	GGYRCC	1 cut(s)	619
AccB7I	CCANNNNNTGG	1 cut(s)	295
AccI	GTMKAC	1 cut(s)	90
AccII	CGCG	1 cut(s)	376
AciI	CCGC	4 cut(s)	80, 197, 376, 520
AclWI	GGATC	5 cut(s)	269, 386, 404, 520, 598
AcsI	RAATTY	1 cut(s)	440
AfaI	GTAC	3 cut(s)	144, 621, 698
AfiI	CCNNNNNNNGG	3 cut(s)	57, 295, 561
AflIII	ACRYGT	2 cut(s)	93, 636
AgsI	TTSAA	2 cut(s)	428, 463
AjiI	CACGTC	1 cut(s)	94
AjnI	CCWGG	1 cut(s)	15
AloI	GAACNNNNNNTCC	2 cut(s)	514, 546
AluBI	AGCT	4 cut(s)	244, 286, 499, 580
AluI	AGCT	4 cut(s)	244, 286, 499, 580
Alw21I	GWGCWC	4 cut(s)	39, 246, 288, 588
Alw44I	GTGCAC	1 cut(s)	584
AlwI	GGATC	5 cut(s)	269, 386, 404, 520, 598
AoxI	GGCC	1 cut(s)	73
ApaLI	GTGCAC	1 cut(s)	584
ApoI	RAATTY	1 cut(s)	440
Asp718I	GGTACC	1 cut(s)	619
AsuC2I	CCSGG	1 cut(s)	482
BaeGI	GKGCMC	1 cut(s)	588
BanI	GGYRCC	1 cut(s)	619
BanII	GRGCYC	2 cut(s)	246, 288
Bbv12I	GWGCWC	4 cut(s)	39, 246, 288, 588
BccI	CCATC	3 cut(s)	15, 182, 344
BceAI	ACGGC	1 cut(s)	210
BcgI	CGANNNNNNTGC	2 cut(s)	29, 63
BciT130I	CCWGG	1 cut(s)	17
BclI	TGATCA	1 cut(s)	189
BcnI	CCSGG	1 cut(s)	482
BfaI	CTAG	2 cut(s)	57, 182
BisI	GCNGC	1 cut(s)	198
BlpI	GCTNAGC	1 cut(s)	687
BlsI	GCNGC	1 cut(s)	199
Bme1390I	CCNGG	2 cut(s)	17, 482
BmgBI	CACGTC	1 cut(s)	94
BmiI	GGNNCC	2 cut(s)	233, 621
BmrFI	CCNGG	2 cut(s)	17, 482
BmrI	ACTGGG	1 cut(s)	607
BmsI	GCATC	1 cut(s)	262
BmuI	ACTGGG	1 cut(s)	607
BpmI	CTGGAG	2 cut(s)	38, 415
Bpu1102I	GCTNAGC	1 cut(s)	687
BpuEI	CTTGAG	2 cut(s)	268, 609
BpuMI	CCSGG	1 cut(s)	482
Bsa29I	ATCGAT	1 cut(s)	348
BsaJI	CCNNGG	2 cut(s)	257, 481
BsaXI	ACNNNNNCTCC	2 cut(s)	514, 544
Bsc4I	CCNNNNNNNGG	3 cut(s)	57, 295, 561
Bse1I	ACTGG	1 cut(s)	602
BseBI	CCWGG	1 cut(s)	17
BseCI	ATCGAT	1 cut(s)	348
BseDI	CCNNGG	2 cut(s)	257, 481
BseGI	GGATG	2 cut(s)	253, 501
BseLI	CCNNNNNNNGG	3 cut(s)	57, 295, 561
BseMII	CTCAG	1 cut(s)	633
BseNI	ACTGG	1 cut(s)	602
BseSI	GKGCMC	1 cut(s)	588
Bsh1236I	CGCG	1 cut(s)	376
BshFI	GGCC	1 cut(s)	75
BshNI	GGYRCC	1 cut(s)	619
BshVI	ATCGAT	1 cut(s)	348
BsiHKAI	GWGCWC	4 cut(s)	39, 246, 288, 588
BsiSI	CCGG	1 cut(s)	481
BslFI	GGGAC	1 cut(s)	498
BslI	CCNNNNNNNGG	3 cut(s)	57, 295, 561
BsmFI	GGGAC	1 cut(s)	498
BsnI	GGCC	1 cut(s)	75
Bsp1286I	GDGCHC	4 cut(s)	39, 246, 288, 588
Bsp143I	GATC	7 cut(s)	154, 189, 261, 378, 409, 512, 603
Bsp1720I	GCTNAGC	1 cut(s)	687
BspACI	CCGC	4 cut(s)	80, 197, 376, 520
BspANI	GGCC	1 cut(s)	75
BspCNI	CTCAG	1 cut(s)	634
BspDI	ATCGAT	1 cut(s)	348
BspFNI	CGCG	1 cut(s)	376
BspHI	TCATGA	1 cut(s)	264
BspLI	GGNNCC	2 cut(s)	233, 621
BspPI	GGATC	5 cut(s)	269, 386, 404, 520, 598
BspQI	GCTCTTC	1 cut(s)	276
BspT107I	GGYRCC	1 cut(s)	619
BsrI	ACTGG	1 cut(s)	602
BssECI	CCNNGG	2 cut(s)	257, 481
BssMI	GATC	7 cut(s)	154, 189, 261, 378, 409, 512, 603
BssT1I	CCWWGG	1 cut(s)	257
Bst2UI	CCWGG	1 cut(s)	17
Bst4CI	ACNGT	5 cut(s)	120, 309, 559, 663, 701
Bst6I	CTCTTC	2 cut(s)	276, 400
BstC8I	GCNNGC	1 cut(s)	684
BstDEI	CTNAG	2 cut(s)	642, 687
BstF5I	GGATG	2 cut(s)	253, 501
BstFNI	CGCG	1 cut(s)	376
BstKTI	GATC	7 cut(s)	157, 192, 264, 381, 412, 515, 606
BstMBI	GATC	7 cut(s)	154, 189, 261, 378, 409, 512, 603
BstMWI	GCNNNNNNNGC	2 cut(s)	250, 688
BstNI	CCWGG	1 cut(s)	17
BstNSI	RCATGY	1 cut(s)	640
BstSCI	CCNGG	2 cut(s)	15, 480
BstSLI	GKGCMC	1 cut(s)	588
BstUI	CGCG	1 cut(s)	376
BstX2I	RGATCY	3 cut(s)	409, 512, 603
BstXI	CCANNNNNNTGG	1 cut(s)	420
BstYI	RGATCY	3 cut(s)	409, 512, 603
Bsu15I	ATCGAT	1 cut(s)	348
BsuRI	GGCC	1 cut(s)	75
BsuTUI	ATCGAT	1 cut(s)	348
BtrI	CACGTC	1 cut(s)	94
BtsCI	GGATG	2 cut(s)	253, 501
BtsI	GCAGTG	1 cut(s)	586
BtsIMutI	CAGTG	2 cut(s)	586, 659
Cac8I	GCNNGC	1 cut(s)	684
CciI	TCATGA	1 cut(s)	264
ClaI	ATCGAT	1 cut(s)	348
Csp6I	GTAC	3 cut(s)	143, 620, 697
CspCI	CAANNNNNGTGG	2 cut(s)	205, 240
CviAII	CATG	6 cut(s)	77, 187, 265, 323, 488, 637
CviQI	GTAC	3 cut(s)	143, 620, 697
DdeI	CTNAG	2 cut(s)	642, 687
DpnI	GATC	7 cut(s)	156, 191, 263, 380, 411, 514, 605
DpnII	GATC	7 cut(s)	154, 189, 261, 378, 409, 512, 603
Eam1104I	CTCTTC	2 cut(s)	276, 400
EarI	CTCTTC	2 cut(s)	276, 400
EciI	GGCGGA	1 cut(s)	535
Ecl136II	GAGCTC	2 cut(s)	244, 286
Eco130I	CCWWGG	1 cut(s)	257
Eco24I	GRGCYC	2 cut(s)	246, 288
Eco53kI	GAGCTC	2 cut(s)	244, 286
EcoICRI	GAGCTC	2 cut(s)	244, 286
EcoRII	CCWGG	1 cut(s)	15
EcoT14I	CCWWGG	1 cut(s)	257
EcoT38I	GRGCYC	2 cut(s)	246, 288
ErhI	CCWWGG	1 cut(s)	257
FaeI	CATG	6 cut(s)	80, 190, 268, 326, 491, 640
FaqI	GGGAC	1 cut(s)	498
FatI	CATG	6 cut(s)	76, 186, 264, 322, 487, 636
FbaI	TGATCA	1 cut(s)	189
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	1 cut(s)	198
FokI	GGATG	2 cut(s)	240, 488
FriOI	GRGCYC	2 cut(s)	246, 288
Fsp4HI	GCNGC	1 cut(s)	198
FspBI	CTAG	2 cut(s)	57, 182
GluI	GCNGC	1 cut(s)	198
GsuI	CTGGAG	2 cut(s)	38, 415
HaeIII	GGCC	1 cut(s)	75
HapII	CCGG	1 cut(s)	481
Hin1II	CATG	6 cut(s)	80, 190, 268, 326, 491, 640
HincII	GTYRAC	1 cut(s)	108
HindII	GTYRAC	1 cut(s)	108
HinfI	GANTC	2 cut(s)	271, 326
HpaI	GTTAAC	1 cut(s)	108
HpaII	CCGG	1 cut(s)	481
Hpy166II	GTNNAC	5 cut(s)	91, 108, 145, 388, 586
Hpy188I	TCNGA	2 cut(s)	241, 643
Hpy188III	TCNNGA	7 cut(s)	152, 247, 265, 394, 449, 460, 626
Hpy8I	GTNNAC	5 cut(s)	91, 108, 145, 388, 586
HpyCH4III	ACNGT	5 cut(s)	120, 309, 559, 663, 701
HpyCH4IV	ACGT	2 cut(s)	93, 695
HpyCH4V	TGCA	3 cut(s)	305, 541, 586
HpyF10VI	GCNNNNNNNGC	2 cut(s)	250, 688
HpyF3I	CTNAG	2 cut(s)	642, 687
HpySE526I	ACGT	2 cut(s)	93, 695
Hsp92II	CATG	6 cut(s)	80, 190, 268, 326, 491, 640
KpnI	GGTACC	1 cut(s)	623
Ksp22I	TGATCA	1 cut(s)	189
KspAI	GTTAAC	1 cut(s)	108
Kzo9I	GATC	7 cut(s)	154, 189, 261, 378, 409, 512, 603
LguI	GCTCTTC	1 cut(s)	276
LmnI	GCTCC	3 cut(s)	231, 291, 396
LpnPI	CCDG	9 cut(s)	2, 29, 379, 462, 494, 501, 557, 566, 583
LweI	GCATC	1 cut(s)	262
MaeI	CTAG	2 cut(s)	57, 182
MaeII	ACGT	2 cut(s)	93, 695
MaeIII	GTNAC	1 cut(s)	309
MalI	GATC	7 cut(s)	156, 191, 263, 380, 411, 514, 605
MboI	GATC	7 cut(s)	154, 189, 261, 378, 409, 512, 603
MboII	GAAGA	4 cut(s)	34, 280, 293, 417
MfeI	CAATTG	1 cut(s)	222
MflI	RGATCY	3 cut(s)	409, 512, 603
MhlI	GDGCHC	4 cut(s)	39, 246, 288, 588
MluCI	AATT	3 cut(s)	222, 440, 542
MnlI	CCTC	7 cut(s)	243, 328, 430, 488, 518, 633, 637
MseI	TTAA	3 cut(s)	107, 122, 594
MspA1I	CMGCKG	1 cut(s)	580
MspI	CCGG	1 cut(s)	481
MspR9I	CCNGG	2 cut(s)	17, 482
MunI	CAATTG	1 cut(s)	222
MvaI	CCWGG	1 cut(s)	17
MvnI	CGCG	1 cut(s)	376
MwoI	GCNNNNNNNGC	2 cut(s)	250, 688
NciI	CCSGG	1 cut(s)	482
NdeII	GATC	7 cut(s)	154, 189, 261, 378, 409, 512, 603
NlaIII	CATG	6 cut(s)	80, 190, 268, 326, 491, 640
NlaIV	GGNNCC	2 cut(s)	233, 621
NspI	RCATGY	1 cut(s)	640
PagI	TCATGA	1 cut(s)	264
PciI	ACATGT	1 cut(s)	636
PciSI	GCTCTTC	1 cut(s)	276
PfeI	GAWTC	2 cut(s)	271, 326
PflMI	CCANNNNNTGG	1 cut(s)	295
PfoI	TCCNGGA	1 cut(s)	15
PkrI	GCNGC	1 cut(s)	199
PscI	ACATGT	1 cut(s)	636
Psp124BI	GAGCTC	2 cut(s)	246, 288
Psp6I	CCWGG	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	15
PspN4I	GGNNCC	2 cut(s)	233, 621
PsuI	RGATCY	3 cut(s)	409, 512, 603
PvuII	CAGCTG	1 cut(s)	580
RsaI	GTAC	3 cut(s)	144, 621, 698
RsaNI	GTAC	3 cut(s)	143, 620, 697
SacI	GAGCTC	2 cut(s)	246, 288
SapI	GCTCTTC	1 cut(s)	276
SaqAI	TTAA	3 cut(s)	107, 122, 594
SatI	GCNGC	1 cut(s)	198
Sau3AI	GATC	7 cut(s)	154, 189, 261, 378, 409, 512, 603
ScrFI	CCNGG	2 cut(s)	17, 482
SduI	GDGCHC	4 cut(s)	39, 246, 288, 588
SetI	ASST	9 cut(s)	96, 246, 288, 458, 480, 501, 582, 625, 698
SfaNI	GCATC	1 cut(s)	262
SmlI	CTYRAG	2 cut(s)	247, 624
SmoI	CTYRAG	2 cut(s)	247, 624
Sse9I	AATT	3 cut(s)	222, 440, 542
SsiI	CCGC	4 cut(s)	80, 197, 376, 520
SspMI	CTAG	2 cut(s)	57, 182
SstI	GAGCTC	2 cut(s)	246, 288
StyD4I	CCNGG	2 cut(s)	15, 480
StyI	CCWWGG	1 cut(s)	257
TaaI	ACNGT	5 cut(s)	120, 309, 559, 663, 701
TaiI	ACGT	2 cut(s)	96, 698
TaqI	TCGA	2 cut(s)	157, 348
TasI	AATT	3 cut(s)	222, 440, 542
TatI	WGTACW	1 cut(s)	142
TauI	GCSGC	1 cut(s)	200
TfiI	GAWTC	2 cut(s)	271, 326
Tru1I	TTAA	3 cut(s)	107, 122, 594
Tru9I	TTAA	3 cut(s)	107, 122, 594
TscAI	CASTG	2 cut(s)	593, 666
TspDTI	ATGAA	3 cut(s)	17, 281, 339
TspRI	CASTG	2 cut(s)	593, 666
Van91I	CCANNNNNTGG	1 cut(s)	295
VneI	GTGCAC	1 cut(s)	584
XapI	RAATTY	1 cut(s)	440
XceI	RCATGY	1 cut(s)	640
XmiI	GTMKAC	1 cut(s)	90
XspI	CTAG	2 cut(s)	57, 182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.