Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000282

Physical Location & Seq

Genomic Coordinates Reverse (-)

58154902 .. 58155327

Gene Structure 426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019888

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGCCATCCTCCTGGTCCTCCTCACATACCTTTGGTCACTCATCTCTGCCTCCTCAAAATCAAATCATAGAAAACTACCACCTGGCCCTCAGTCACTGCCAATAATTGGAAGCCTCCATATGCTAGGCAATGTTCCTACCATAGTAGTCTCCTCCCCCAAAGTCGCAAAGCTATTCCTCAAAACTCATGACAATAATTTTGCAAGCCGACCCAAAACCCAAGCCTCCGAGTACCTCTCCTACGGCACAAAGGGCATGATCCTTTCCCAATACGGTCCTTACTGGCGCCATATTAGGAAGCTCAGCACGCTTCATCTCTTCTGTCTAGCAAAAATGGAGGCTTTCGAGCCGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

119

Amino Acids

13.21

Weight (kDa)

10.01

Isoelectric Point (pI)

41.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	41 - 117	1.6e-07	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000282)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12350 FvH4_5g12380 FvH4_5g12392 FvH4_5g12400 FvH4_5g12430
malus_domestica	MD06G1213300.v1.1 MD06G1213500.v1.1 MD06G1213700.v1.1 MD06G1213800.v1.1 MD06G1213900.v1.1 MD06G1214000.v1.1 MD06G1214400.v1.1 MD14G1224300.v1.1 MD14G1224400.v1.1 MD14G1224600.v1.1 MD14G1224700.v1.1 MD14G1224800.v1.1 MD14G1224900.v1.1 MD14G1225100.v1.1 MD14G1225400.v1.1
prunus_persica	Prupe.5G219700_v2.0.a1 Prupe.5G219800_v2.0.a1 Prupe.5G219900_v2.0.a1 Prupe.8G078500_v2.0.a1
pyrus_communis	pycom06g19100 pycom14g18590 pycom14g18600 pycom14g18610 pycom14g18660
rosa_chinensis	RchiOBHm_Chr0c12g0499591 RchiOBHm_Chr2g0140591 RchiOBHm_Chr2g0140631 RchiOBHm_Chr2g0140641 RchiOBHm_Chr2g0140651 RchiOBHm_Chr4g0417991 RchiOBHm_Chr4g0418001 RchiOBHm_Chr4g0418101 RchiOBHm_Chr4g0418111 RchiOBHm_Chr4g0418121 RchiOBHm_Chr6g0280191 RchiOBHm_Chr6g0280241 RchiOBHm_Chr6g0280251 RchiOBHm_Chr7g0185031 RchiOBHm_Chr7g0185051 RchiOBHm_Chr7g0185081 RchiOBHm_Chr7g0185091 RchiOBHm_Chr7g0185111 RchiOBHm_Chr7g0185131 RchiOBHm_Chr7g0185151 RchiOBHm_Chr7g0185161 RchiOBHm_Chr7g0185191 RchiOBHm_Chr7g0222431
rosa_laevigata	RLG00000002061 RLG00000004934 RLG00000004935 RLG00000004937 RLG00000013071 RLG00000013077 RLG00000019621 RLG00000019881 RLG00000019884 RLG00000019887 RLG00000019888 RLG00000028839
rosa_multiflora	Rmu_co8014370.1_g000001 Rmu_co8334683.1_g000001 Rmu_co8440383.1_g000001 Rmu_sc0002826.1_g000008 Rmu_sc0002826.1_g000009 Rmu_sc0002826.1_g000030 Rmu_sc0004483.1_g000005 Rmu_sc0004638.1_g000003 Rmu_sc0004638.1_g000004 Rmu_sc0005756.1_g000003 Rmu_sc0006493.1_g000023 Rmu_sc0006493.1_g000024 Rmu_sc0007137.1_g000017 Rmu_sc0008496.1_g000022 Rmu_sc0008769.1_g000003 Rmu_sc0013612.1_g000026 Rmu_sc0013864.1_g000001 Rmu_sc0013864.1_g000007 Rmu_sc0013864.1_g000008 Rmu_sc0030128.1_g000001 Rmu_sc0041660.1_g000001 Rmu_ssc0000289.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104640 Rroxscaffold_3G00253970 Rroxscaffold_3G00269170 Rroxscaffold_3G00269200 Rroxscaffold_3G00269210 Rroxscaffold_3G00269220 Rroxscaffold_3G00269230 Rroxscaffold_7G00188320
rosa_rugosa	Rorug01G0052300 Rorug05G0212000 Rorug06G0130700 Rorug06G0131100 Rorug06G0466200 Rorug06G0466300 Rorug06G0466400 Rorug06G0466500 Rorug06G0466700 Rorug07G0208500 Rorug07G0294600
rosa_samantha	Rh4AG137600 Rh6DG237300 Rh6DG237800 Rh7AG076200 Rh7AG076300 Rh7AG076500 Rh7AG076600 Rh7AG350700 Rh7BG070800 Rh7BG070900 Rh7BG071000 Rh7BG071100
rosa_wichuraiana	Rw6G020990 Rw6G021010 Rw7G005900 Rw7G005910 Rw7G005920 Rw7G005940 Rw7G005950 Rw7G005970 Rw7G029600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	285
AccB7I	CCANNNNNTGG	1 cut(s)	107
AciI	CCGC	1 cut(s)	350
AclWI	GGATC	1 cut(s)	253
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	286
AfaI	GTAC	1 cut(s)	233
AfiI	CCNNNNNNNGG	1 cut(s)	107
AjnI	CCWGG	2 cut(s)	12, 82
AluBI	AGCT	2 cut(s)	172, 301
AluI	AGCT	2 cut(s)	172, 301
Alw26I	GTCTC	1 cut(s)	154
AlwI	GGATC	1 cut(s)	253
AlwNI	CAGNNNCTG	1 cut(s)	97
AoxI	GGCC	2 cut(s)	3, 85
ArsI	GACNNNNNNTTYG	2 cut(s)	182, 214
AspLEI	GCGC	1 cut(s)	288
AspS9I	GGNCC	3 cut(s)	16, 86, 275
AvaII	GGWCC	2 cut(s)	16, 275
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	285
BccI	CCATC	1 cut(s)	14
BceAI	ACGGC	1 cut(s)	259
BciT130I	CCWGG	2 cut(s)	14, 84
BcoDI	GTCTC	1 cut(s)	154
BfaI	CTAG	2 cut(s)	125, 326
BfoI	RGCGCY	1 cut(s)	289
BisI	GCNGC	1 cut(s)	350
BlpI	GCTNAGC	1 cut(s)	302
BlsI	GCNGC	1 cut(s)	351
Bme1390I	CCNGG	2 cut(s)	14, 84
Bme18I	GGWCC	2 cut(s)	16, 275
BmgT120I	GGNCC	3 cut(s)	16, 86, 275
BmiI	GGNNCC	1 cut(s)	287
BmrFI	CCNGG	2 cut(s)	14, 84
BplI	GAGNNNNNCTC	2 cut(s)	221, 253
Bpu1102I	GCTNAGC	1 cut(s)	302
BsaHI	GRCGYC	1 cut(s)	286
Bsc4I	CCNNNNNNNGG	1 cut(s)	107
Bse1I	ACTGG	1 cut(s)	287
Bse3DI	GCAATG	1 cut(s)	136
BseBI	CCWGG	2 cut(s)	14, 84
BseGI	GGATG	1 cut(s)	6
BseLI	CCNNNNNNNGG	1 cut(s)	107
BseMI	GCAATG	1 cut(s)	136
BseMII	CTCAG	2 cut(s)	104, 316
BseNI	ACTGG	1 cut(s)	287
BseRI	GAGGAG	3 cut(s)	11, 43, 142
BshFI	GGCC	2 cut(s)	5, 87
BshNI	GGYRCC	1 cut(s)	285
BslI	CCNNNNNNNGG	1 cut(s)	107
BsmAI	GTCTC	1 cut(s)	154
BsnI	GGCC	2 cut(s)	5, 87
Bsp143I	GATC	1 cut(s)	258
Bsp1720I	GCTNAGC	1 cut(s)	302
BspACI	CCGC	1 cut(s)	350
BspANI	GGCC	2 cut(s)	5, 87
BspCNI	CTCAG	2 cut(s)	103, 315
BspHI	TCATGA	1 cut(s)	187
BspLI	GGNNCC	1 cut(s)	287
BspPI	GGATC	1 cut(s)	253
BspT107I	GGYRCC	1 cut(s)	285
BsrDI	GCAATG	1 cut(s)	136
BsrI	ACTGG	1 cut(s)	287
BssMI	GATC	1 cut(s)	258
BssNI	GRCGYC	1 cut(s)	286
Bst2UI	CCWGG	2 cut(s)	14, 84
Bst4CI	ACNGT	1 cut(s)	275
Bst6I	CTCTTC	1 cut(s)	323
BstACI	GRCGYC	1 cut(s)	286
BstC8I	GCNNGC	2 cut(s)	205, 308
BstDEI	CTNAG	2 cut(s)	90, 302
BstF5I	GGATG	1 cut(s)	6
BstH2I	RGCGCY	1 cut(s)	289
BstHHI	GCGC	1 cut(s)	288
BstKTI	GATC	1 cut(s)	261
BstMAI	GTCTC	1 cut(s)	154
BstMBI	GATC	1 cut(s)	258
BstMWI	GCNNNNNNNGC	2 cut(s)	252, 307
BstNI	CCWGG	2 cut(s)	14, 84
BstSCI	CCNGG	2 cut(s)	12, 82
BstXI	CCANNNNNNTGG	1 cut(s)	13
BsuRI	GGCC	2 cut(s)	5, 87
BtsCI	GGATG	1 cut(s)	6
BtsI	GCAGTG	1 cut(s)	95
BtsIMutI	CAGTG	1 cut(s)	95
Cac8I	GCNNGC	2 cut(s)	205, 308
CaiI	CAGNNNCTG	1 cut(s)	97
CciI	TCATGA	1 cut(s)	187
CfoI	GCGC	1 cut(s)	288
Cfr13I	GGNCC	3 cut(s)	16, 86, 275
Csp6I	GTAC	1 cut(s)	232
CviAII	CATG	2 cut(s)	188, 256
CviJI	RGCY	9 cut(s)	5, 87, 114, 172, 207, 224, 301, 341, 349
CviKI_1	RGCY	9 cut(s)	5, 87, 114, 172, 207, 224, 301, 341, 349
CviQI	GTAC	1 cut(s)	232
DdeI	CTNAG	2 cut(s)	90, 302
DinI	GGCGCC	1 cut(s)	287
DpnI	GATC	1 cut(s)	260
DpnII	GATC	1 cut(s)	258
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	323
EarI	CTCTTC	1 cut(s)	323
Eco47I	GGWCC	2 cut(s)	16, 275
EcoRII	CCWGG	2 cut(s)	12, 82
EgeI	GGCGCC	1 cut(s)	287
EheI	GGCGCC	1 cut(s)	287
FaeI	CATG	2 cut(s)	191, 259
FaiI	YATR	8 cut(s)	28, 69, 120, 122, 143, 189, 257, 291
FatI	CATG	2 cut(s)	187, 255
FauNDI	CATATG	1 cut(s)	120
Fnu4HI	GCNGC	1 cut(s)	350
Fsp4HI	GCNGC	1 cut(s)	350
FspBI	CTAG	2 cut(s)	125, 326
GlaI	GCGC	1 cut(s)	287
GluI	GCNGC	1 cut(s)	350
HaeII	RGCGCY	1 cut(s)	289
HaeIII	GGCC	2 cut(s)	5, 87
HhaI	GCGC	1 cut(s)	288
Hin1I	GRCGYC	1 cut(s)	286
Hin1II	CATG	2 cut(s)	191, 259
Hin6I	GCGC	1 cut(s)	286
HinP1I	GCGC	1 cut(s)	286
Hpy188I	TCNGA	1 cut(s)	229
Hpy188III	TCNNGA	1 cut(s)	188
HpyCH4III	ACNGT	1 cut(s)	275
HpyCH4V	TGCA	1 cut(s)	203
HpyF10VI	GCNNNNNNNGC	2 cut(s)	252, 307
HpyF3I	CTNAG	2 cut(s)	90, 302
Hsp92I	GRCGYC	1 cut(s)	286
Hsp92II	CATG	2 cut(s)	191, 259
HspAI	GCGC	1 cut(s)	286
KasI	GGCGCC	1 cut(s)	285
Kzo9I	GATC	1 cut(s)	258
LpnPI	CCDG	4 cut(s)	26, 69, 96, 268
MaeI	CTAG	2 cut(s)	125, 326
MaeIII	GTNAC	2 cut(s)	36, 93
MalI	GATC	1 cut(s)	260
MboI	GATC	1 cut(s)	258
MboII	GAAGA	1 cut(s)	310
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	105, 196
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	286
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	352
MspR9I	CCNGG	2 cut(s)	14, 84
MvaI	CCWGG	2 cut(s)	14, 84
MwoI	GCNNNNNNNGC	2 cut(s)	252, 307
NarI	GGCGCC	1 cut(s)	286
NdeI	CATATG	1 cut(s)	120
NdeII	GATC	1 cut(s)	258
NlaIII	CATG	2 cut(s)	191, 259
NlaIV	GGNNCC	1 cut(s)	287
NmuCI	GTSAC	2 cut(s)	36, 93
PagI	TCATGA	1 cut(s)	187
PflMI	CCANNNNNTGG	1 cut(s)	107
PkrI	GCNGC	1 cut(s)	351
PluTI	GGCGCC	1 cut(s)	289
Psp6I	CCWGG	2 cut(s)	12, 82
PspGI	CCWGG	2 cut(s)	12, 82
PspN4I	GGNNCC	1 cut(s)	287
PspPI	GGNCC	3 cut(s)	16, 86, 275
PstNI	CAGNNNCTG	1 cut(s)	97
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
SatI	GCNGC	1 cut(s)	350
Sau3AI	GATC	1 cut(s)	258
Sau96I	GGNCC	3 cut(s)	16, 86, 275
ScrFI	CCNGG	2 cut(s)	14, 84
SetI	ASST	5 cut(s)	33, 85, 174, 237, 303
SfoI	GGCGCC	1 cut(s)	287
SinI	GGWCC	2 cut(s)	16, 275
Sse9I	AATT	2 cut(s)	105, 196
SsiI	CCGC	1 cut(s)	350
SspDI	GGCGCC	1 cut(s)	285
SspMI	CTAG	2 cut(s)	125, 326
StyD4I	CCNGG	2 cut(s)	12, 82
TaaI	ACNGT	1 cut(s)	275
TaqI	TCGA	1 cut(s)	345
TasI	AATT	2 cut(s)	105, 196
TauI	GCSGC	1 cut(s)	352
TscAI	CASTG	1 cut(s)	102
TseFI	GTSAC	2 cut(s)	36, 93
Tsp45I	GTSAC	2 cut(s)	36, 93
TspDTI	ATGAA	1 cut(s)	302
TspRI	CASTG	1 cut(s)	102
Van91I	CCANNNNNTGG	1 cut(s)	107
VpaK11BI	GGWCC	2 cut(s)	16, 275
XspI	CTAG	2 cut(s)	125, 326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.