RchiOBHm_Chr4g0418121

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000282
Physical Location & Seq
Forward (+)
43570630 .. 43571121
492 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38813

Sequence Viewer

Length: 492 bp
ATGGTGGATGAGACTGATATGCCAAATCTAGTTTACTTGAGTATGGTGGTTAAGGAGAGCTTCAGACTGCACCCAGCTGCACCATTACTAATCCCACATGAATCCATCGAGGATATTACAATCAATGGATACGACATACCCAAGAAATCGAGGATCATGGTAAACATATGGAGCATTGGAAGGGATCCTAATGTTTGGTCAAAAAACATTGAGGAATTTTATACTGAAAGGTTCATGAACAACAATATAGACCTCCGGGGACATGATTTTGAGCTCCTCCCAGTTGGAGCTGGCCGAAGAGGGTGTCCGGGTATACAATTAGGGCAAACCATAGTTGGGATAGTTCTTGCACAACTGGTGCACTGCTTTAATTGGGATCTCCCAAATTACTTGCTACCTCAAGACTTGGACATAACAGAGAAGTATGGCTTATCAATGCGAAAAGCCAAACACTTGCTTGCGAAGCCAACATACCTTCTTACTCTTGTGTAG

Protein Analysis

163

Amino Acids

18.65

Weight (kDa)

5.93

Isoelectric Point (pI)

42.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 3 - 149 3.9e-39 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000282)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g12350 FvH4_5g12380 FvH4_5g12392 FvH4_5g12400 FvH4_5g12430
malus_domestica MD06G1213300.v1.1 MD06G1213500.v1.1 MD06G1213700.v1.1 MD06G1213800.v1.1 MD06G1213900.v1.1 MD06G1214000.v1.1 MD06G1214400.v1.1 MD14G1224300.v1.1 MD14G1224400.v1.1 MD14G1224600.v1.1 MD14G1224700.v1.1 MD14G1224800.v1.1 MD14G1224900.v1.1 MD14G1225100.v1.1 MD14G1225400.v1.1
prunus_persica Prupe.5G219700_v2.0.a1 Prupe.5G219800_v2.0.a1 Prupe.5G219900_v2.0.a1 Prupe.8G078500_v2.0.a1
pyrus_communis pycom06g19100 pycom14g18590 pycom14g18600 pycom14g18610 pycom14g18660
rosa_chinensis RchiOBHm_Chr0c12g0499591 RchiOBHm_Chr2g0140591 RchiOBHm_Chr2g0140631 RchiOBHm_Chr2g0140641 RchiOBHm_Chr2g0140651 RchiOBHm_Chr4g0417991 RchiOBHm_Chr4g0418001 RchiOBHm_Chr4g0418101 RchiOBHm_Chr4g0418111 RchiOBHm_Chr4g0418121 RchiOBHm_Chr6g0280191 RchiOBHm_Chr6g0280241 RchiOBHm_Chr6g0280251 RchiOBHm_Chr7g0185031 RchiOBHm_Chr7g0185051 RchiOBHm_Chr7g0185081 RchiOBHm_Chr7g0185091 RchiOBHm_Chr7g0185111 RchiOBHm_Chr7g0185131 RchiOBHm_Chr7g0185151 RchiOBHm_Chr7g0185161 RchiOBHm_Chr7g0185191 RchiOBHm_Chr7g0222431
rosa_laevigata RLG00000002061 RLG00000004934 RLG00000004935 RLG00000004937 RLG00000013071 RLG00000013077 RLG00000019621 RLG00000019881 RLG00000019884 RLG00000019887 RLG00000019888 RLG00000028839
rosa_multiflora Rmu_co8014370.1_g000001 Rmu_co8334683.1_g000001 Rmu_co8440383.1_g000001 Rmu_sc0002826.1_g000008 Rmu_sc0002826.1_g000009 Rmu_sc0002826.1_g000030 Rmu_sc0004483.1_g000005 Rmu_sc0004638.1_g000003 Rmu_sc0004638.1_g000004 Rmu_sc0005756.1_g000003 Rmu_sc0006493.1_g000023 Rmu_sc0006493.1_g000024 Rmu_sc0007137.1_g000017 Rmu_sc0008496.1_g000022 Rmu_sc0008769.1_g000003 Rmu_sc0013612.1_g000026 Rmu_sc0013864.1_g000001 Rmu_sc0013864.1_g000007 Rmu_sc0013864.1_g000008 Rmu_sc0030128.1_g000001 Rmu_sc0041660.1_g000001 Rmu_ssc0000289.1_g000001
rosa_roxburghii Rroxscaffold_2G00104640 Rroxscaffold_3G00253970 Rroxscaffold_3G00269170 Rroxscaffold_3G00269200 Rroxscaffold_3G00269210 Rroxscaffold_3G00269220 Rroxscaffold_3G00269230 Rroxscaffold_7G00188320
rosa_rugosa Rorug01G0052300 Rorug05G0212000 Rorug06G0130700 Rorug06G0131100 Rorug06G0466200 Rorug06G0466300 Rorug06G0466400 Rorug06G0466500 Rorug06G0466700 Rorug07G0208500 Rorug07G0294600
rosa_samantha Rh4AG137600 Rh6DG237300 Rh6DG237800 Rh7AG076200 Rh7AG076300 Rh7AG076500 Rh7AG076600 Rh7AG350700 Rh7BG070800 Rh7BG070900 Rh7BG071000 Rh7BG071100
rosa_wichuraiana Rw6G020990 Rw6G021010 Rw7G005900 Rw7G005910 Rw7G005920 Rw7G005940 Rw7G005950 Rw7G005970 Rw7G029600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 313
AclWI GGATC 4 cut(s) 161, 179, 192, 384
AcoI YGGCCR 1 cut(s) 292
AcsI RAATTY 1 cut(s) 215
AcuI CTGAAG 1 cut(s) 46
AfiI CCNNNNNNNGG 1 cut(s) 336
AluBI AGCT 4 cut(s) 60, 77, 274, 290
AluI AGCT 4 cut(s) 60, 77, 274, 290
Alw21I GWGCWC 2 cut(s) 276, 363
Alw26I GTCTC 1 cut(s) 5
Alw44I GTGCAC 1 cut(s) 359
AlwI GGATC 4 cut(s) 161, 179, 192, 384
AoxI GGCC 1 cut(s) 292
ApaLI GTGCAC 1 cut(s) 359
ApeKI GCWGC 1 cut(s) 77
ApoI RAATTY 1 cut(s) 215
ArsI GACNNNNNNTTYG 2 cut(s) 289, 321
AsuC2I CCSGG 2 cut(s) 257, 309
BaeGI GKGCMC 1 cut(s) 363
BamHI GGATCC 1 cut(s) 184
BanII GRGCYC 1 cut(s) 276
BarI GAAGNNNNNNTAC 2 cut(s) 455, 487
Bbv12I GWGCWC 2 cut(s) 276, 363
BbvI GCAGC 1 cut(s) 64
BccI CCATC 1 cut(s) 113
BciVI GTATCC 1 cut(s) 122
BcnI CCSGG 2 cut(s) 257, 309
BcoDI GTCTC 1 cut(s) 5
BfaI CTAG 1 cut(s) 29
BfuI GTATCC 1 cut(s) 122
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
Bme1390I CCNGG 2 cut(s) 257, 309
BmiI GGNNCC 1 cut(s) 186
BmrFI CCNGG 2 cut(s) 257, 309
BmrI ACTGGG 1 cut(s) 275
BmuI ACTGGG 1 cut(s) 275
BpuEI CTTGAG 2 cut(s) 58, 384
BpuMI CCSGG 2 cut(s) 257, 309
BsaJI CCNNGG 1 cut(s) 256
Bsc4I CCNNNNNNNGG 1 cut(s) 336
Bse1I ACTGG 2 cut(s) 281, 360
BseDI CCNNGG 1 cut(s) 256
BseGI GGATG 1 cut(s) 13
BseLI CCNNNNNNNGG 1 cut(s) 336
BseNI ACTGG 2 cut(s) 281, 360
BseRI GAGGAG 1 cut(s) 266
BseSI GKGCMC 1 cut(s) 363
BseXI GCAGC 1 cut(s) 64
BseYI CCCAGC 1 cut(s) 73
BsgI GTGCAG 2 cut(s) 53, 63
BshFI GGCC 1 cut(s) 294
BsiHKAI GWGCWC 2 cut(s) 276, 363
BsiSI CCGG 2 cut(s) 256, 308
BslFI GGGAC 1 cut(s) 273
BslI CCNNNNNNNGG 1 cut(s) 336
BsmAI GTCTC 1 cut(s) 5
BsmFI GGGAC 1 cut(s) 273
BsnI GGCC 1 cut(s) 294
Bsp1286I GDGCHC 2 cut(s) 276, 363
Bsp143I GATC 3 cut(s) 153, 184, 376
BspANI GGCC 1 cut(s) 294
BspHI TCATGA 1 cut(s) 234
BspLI GGNNCC 1 cut(s) 186
BspPI GGATC 4 cut(s) 161, 179, 192, 384
BsrI ACTGG 2 cut(s) 281, 360
BssECI CCNNGG 1 cut(s) 256
BssMI GATC 3 cut(s) 153, 184, 376
BssNAI GTATAC 1 cut(s) 314
Bst1107I GTATAC 1 cut(s) 314
Bst6I CTCTTC 1 cut(s) 292
BstC8I GCNNGC 2 cut(s) 292, 459
BstF5I GGATG 1 cut(s) 13
BstKTI GATC 3 cut(s) 156, 187, 379
BstMAI GTCTC 1 cut(s) 5
BstMBI GATC 3 cut(s) 153, 184, 376
BstMWI GCNNNNNNNGC 1 cut(s) 463
BstSCI CCNGG 2 cut(s) 255, 307
BstSLI GKGCMC 1 cut(s) 363
BstV1I GCAGC 1 cut(s) 64
BstX2I RGATCY 2 cut(s) 184, 376
BstYI RGATCY 2 cut(s) 184, 376
BstZ17I GTATAC 1 cut(s) 314
BsuI GTATCC 1 cut(s) 122
BsuRI GGCC 1 cut(s) 294
BtsCI GGATG 1 cut(s) 13
BtsI GCAGTG 1 cut(s) 361
BtsIMutI CAGTG 1 cut(s) 361
Cac8I GCNNGC 2 cut(s) 292, 459
CciI TCATGA 1 cut(s) 234
CviAII CATG 4 cut(s) 98, 157, 235, 263
CviJI RGCY 8 cut(s) 60, 77, 274, 290, 294, 429, 446, 466
CviKI_1 RGCY 8 cut(s) 60, 77, 274, 290, 294, 429, 446, 466
DpnI GATC 3 cut(s) 155, 186, 378
DpnII GATC 3 cut(s) 153, 184, 376
EaeI YGGCCR 1 cut(s) 292
Eam1104I CTCTTC 1 cut(s) 292
EarI CTCTTC 1 cut(s) 292
Ecl136II GAGCTC 1 cut(s) 274
Eco24I GRGCYC 1 cut(s) 276
Eco53kI GAGCTC 1 cut(s) 274
Eco57I CTGAAG 1 cut(s) 46
EcoICRI GAGCTC 1 cut(s) 274
EcoT38I GRGCYC 1 cut(s) 276
FaeI CATG 4 cut(s) 101, 160, 238, 266
FalI AAGNNNNNCTT 4 cut(s) 44, 76, 413, 445
FaqI GGGAC 1 cut(s) 273
FatI CATG 4 cut(s) 97, 156, 234, 262
FauNDI CATATG 1 cut(s) 167
FblI GTMKAC 1 cut(s) 313
Fnu4HI GCNGC 1 cut(s) 78
FokI GGATG 1 cut(s) 20
FriOI GRGCYC 1 cut(s) 276
Fsp4HI GCNGC 1 cut(s) 78
FspBI CTAG 1 cut(s) 29
GluI GCNGC 1 cut(s) 78
GsaI CCCAGC 1 cut(s) 77
HaeIII GGCC 1 cut(s) 294
HapII CCGG 2 cut(s) 256, 308
Hin1II CATG 4 cut(s) 101, 160, 238, 266
HinfI GANTC 1 cut(s) 101
HpaII CCGG 2 cut(s) 256, 308
Hpy166II GTNNAC 4 cut(s) 34, 163, 314, 361
Hpy188I TCNGA 1 cut(s) 65
Hpy188III TCNNGA 2 cut(s) 235, 401
Hpy8I GTNNAC 4 cut(s) 34, 163, 314, 361
HpyAV CCTTC 2 cut(s) 174, 485
HpyCH4V TGCA 4 cut(s) 70, 80, 350, 361
HpyF10VI GCNNNNNNNGC 1 cut(s) 463
Hsp92II CATG 4 cut(s) 101, 160, 238, 266
Kzo9I GATC 3 cut(s) 153, 184, 376
LmnI GCTCC 3 cut(s) 171, 279, 287
LpnPI CCDG 6 cut(s) 87, 269, 276, 294, 321, 341
Lsp1109I GCAGC 1 cut(s) 64
MaeI CTAG 1 cut(s) 29
MalI GATC 3 cut(s) 155, 186, 378
MboI GATC 3 cut(s) 153, 184, 376
MboII GAAGA 1 cut(s) 309
MflI RGATCY 2 cut(s) 184, 376
MhlI GDGCHC 2 cut(s) 276, 363
MluCI AATT 4 cut(s) 215, 317, 370, 385
MmeI TCCRAC 1 cut(s) 265
MnlI CCTC 7 cut(s) 103, 144, 205, 263, 287, 293, 408
MseI TTAA 2 cut(s) 51, 369
MspA1I CMGCKG 1 cut(s) 77
MspI CCGG 2 cut(s) 256, 308
MspR9I CCNGG 2 cut(s) 257, 309
MwoI GCNNNNNNNGC 1 cut(s) 463
NciI CCSGG 2 cut(s) 257, 309
NdeI CATATG 1 cut(s) 167
NdeII GATC 3 cut(s) 153, 184, 376
NlaIII CATG 4 cut(s) 101, 160, 238, 266
NlaIV GGNNCC 1 cut(s) 186
PagI TCATGA 1 cut(s) 234
PfeI GAWTC 1 cut(s) 101
PkrI GCNGC 1 cut(s) 79
Psp124BI GAGCTC 1 cut(s) 276
PspFI CCCAGC 1 cut(s) 73
PspN4I GGNNCC 1 cut(s) 186
PsuI RGATCY 2 cut(s) 184, 376
PvuII CAGCTG 1 cut(s) 77
SacI GAGCTC 1 cut(s) 276
SaqAI TTAA 2 cut(s) 51, 369
SatI GCNGC 1 cut(s) 78
Sau3AI GATC 3 cut(s) 153, 184, 376
ScrFI CCNGG 2 cut(s) 257, 309
SduI GDGCHC 2 cut(s) 276, 363
SetI ASST 8 cut(s) 62, 79, 233, 255, 276, 292, 400, 477
SmlI CTYRAG 2 cut(s) 37, 399
SmoI CTYRAG 2 cut(s) 37, 399
Sse9I AATT 4 cut(s) 215, 317, 370, 385
SspMI CTAG 1 cut(s) 29
SstI GAGCTC 1 cut(s) 276
StyD4I CCNGG 2 cut(s) 255, 307
TaqI TCGA 2 cut(s) 108, 149
TasI AATT 4 cut(s) 215, 317, 370, 385
TfiI GAWTC 1 cut(s) 101
Tru1I TTAA 2 cut(s) 51, 369
Tru9I TTAA 2 cut(s) 51, 369
TscAI CASTG 1 cut(s) 368
TseI GCWGC 1 cut(s) 77
TspDTI ATGAA 3 cut(s) 114, 223, 251
TspRI CASTG 1 cut(s) 368
VneI GTGCAC 1 cut(s) 359
XapI RAATTY 1 cut(s) 215
XmiI GTMKAC 1 cut(s) 313
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.