Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013864.1

Orthogroup ID

OG0000282

Physical Location & Seq

Genomic Coordinates Reverse (-)

23578 .. 24111

Gene Structure 534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013864.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

atgaagaaactccaaaaagagctccaaactgtggttggcatggaccgaatggtggaagaaactgatttgccaaagctagattacttgaatatggtggtcaaggagagcttcagactacacccagttggaccattactaatcccacatgaatctatcgaggacattgcaatagatggatacgacatacccaagaagtggcggatcattgtaaacatctggagcattggaagagatcctagtgtatggtcgaaaaatgttgaggaattttatcctgaaaggttcatgaacaacaatatagacctccggggacatgactttcagctcatcccatttgggtctggccgaagaggttgtccaggtctgcaattagggctaaccacaattcggatagttctggcacagttggtgcactgctttaactgggagctcccaactggcatgttacctcaagacttggacatgtctgagaaattcggtttatcaatgtcgaaggccaaacacttgcttgccaagccgacctaccgtcttctgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

177

Amino Acids

20.43

Weight (kDa)

6.97

Isoelectric Point (pI)

46.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000282)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12350 FvH4_5g12380 FvH4_5g12392 FvH4_5g12400 FvH4_5g12430
malus_domestica	MD06G1213300.v1.1 MD06G1213500.v1.1 MD06G1213700.v1.1 MD06G1213800.v1.1 MD06G1213900.v1.1 MD06G1214000.v1.1 MD06G1214400.v1.1 MD14G1224300.v1.1 MD14G1224400.v1.1 MD14G1224600.v1.1 MD14G1224700.v1.1 MD14G1224800.v1.1 MD14G1224900.v1.1 MD14G1225100.v1.1 MD14G1225400.v1.1
prunus_persica	Prupe.5G219700_v2.0.a1 Prupe.5G219800_v2.0.a1 Prupe.5G219900_v2.0.a1 Prupe.8G078500_v2.0.a1
pyrus_communis	pycom06g19100 pycom14g18590 pycom14g18600 pycom14g18610 pycom14g18660
rosa_chinensis	RchiOBHm_Chr0c12g0499591 RchiOBHm_Chr2g0140591 RchiOBHm_Chr2g0140631 RchiOBHm_Chr2g0140641 RchiOBHm_Chr2g0140651 RchiOBHm_Chr4g0417991 RchiOBHm_Chr4g0418001 RchiOBHm_Chr4g0418101 RchiOBHm_Chr4g0418111 RchiOBHm_Chr4g0418121 RchiOBHm_Chr6g0280191 RchiOBHm_Chr6g0280241 RchiOBHm_Chr6g0280251 RchiOBHm_Chr7g0185031 RchiOBHm_Chr7g0185051 RchiOBHm_Chr7g0185081 RchiOBHm_Chr7g0185091 RchiOBHm_Chr7g0185111 RchiOBHm_Chr7g0185131 RchiOBHm_Chr7g0185151 RchiOBHm_Chr7g0185161 RchiOBHm_Chr7g0185191 RchiOBHm_Chr7g0222431
rosa_laevigata	RLG00000002061 RLG00000004934 RLG00000004935 RLG00000004937 RLG00000013071 RLG00000013077 RLG00000019621 RLG00000019881 RLG00000019884 RLG00000019887 RLG00000019888 RLG00000028839
rosa_multiflora	Rmu_co8014370.1_g000001 Rmu_co8334683.1_g000001 Rmu_co8440383.1_g000001 Rmu_sc0002826.1_g000008 Rmu_sc0002826.1_g000009 Rmu_sc0002826.1_g000030 Rmu_sc0004483.1_g000005 Rmu_sc0004638.1_g000003 Rmu_sc0004638.1_g000004 Rmu_sc0005756.1_g000003 Rmu_sc0006493.1_g000023 Rmu_sc0006493.1_g000024 Rmu_sc0007137.1_g000017 Rmu_sc0008496.1_g000022 Rmu_sc0008769.1_g000003 Rmu_sc0013612.1_g000026 Rmu_sc0013864.1_g000001 Rmu_sc0013864.1_g000007 Rmu_sc0013864.1_g000008 Rmu_sc0030128.1_g000001 Rmu_sc0041660.1_g000001 Rmu_ssc0000289.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104640 Rroxscaffold_3G00253970 Rroxscaffold_3G00269170 Rroxscaffold_3G00269200 Rroxscaffold_3G00269210 Rroxscaffold_3G00269220 Rroxscaffold_3G00269230 Rroxscaffold_7G00188320
rosa_rugosa	Rorug01G0052300 Rorug05G0212000 Rorug06G0130700 Rorug06G0131100 Rorug06G0466200 Rorug06G0466300 Rorug06G0466400 Rorug06G0466500 Rorug06G0466700 Rorug07G0208500 Rorug07G0294600
rosa_samantha	Rh4AG137600 Rh6DG237300 Rh6DG237800 Rh7AG076200 Rh7AG076300 Rh7AG076500 Rh7AG076600 Rh7AG350700 Rh7BG070800 Rh7BG070900 Rh7BG071000 Rh7BG071100
rosa_wichuraiana	Rw6G020990 Rw6G021010 Rw7G005900 Rw7G005910 Rw7G005920 Rw7G005940 Rw7G005950 Rw7G005970 Rw7G029600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	31, 195
AciI	CCGC	1 cut(s)	199
AclWI	GGATC	2 cut(s)	209, 227
AcoI	YGGCCR	1 cut(s)	340
AcsI	RAATTY	2 cut(s)	263, 470
AcuI	CTGAAG	1 cut(s)	94
AfiI	CCNNNNNNNGG	4 cut(s)	31, 52, 195, 384
AflIII	ACRYGT	1 cut(s)	459
AgsI	TTSAA	1 cut(s)	88
AhdI	GACNNNNNGTC	1 cut(s)	522
AjnI	CCWGG	1 cut(s)	355
AluBI	AGCT	5 cut(s)	22, 76, 108, 322, 427
AluI	AGCT	5 cut(s)	22, 76, 108, 322, 427
Alw21I	GWGCWC	3 cut(s)	24, 411, 429
Alw44I	GTGCAC	1 cut(s)	407
AlwI	GGATC	2 cut(s)	209, 227
AoxI	GGCC	2 cut(s)	340, 492
ApaLI	GTGCAC	1 cut(s)	407
ApoI	RAATTY	2 cut(s)	263, 470
ArsI	GACNNNNNNTTYG	2 cut(s)	337, 369
AspS9I	GGNCC	2 cut(s)	43, 128
AsuC2I	CCSGG	1 cut(s)	305
AvaII	GGWCC	2 cut(s)	43, 128
BaeGI	GKGCMC	1 cut(s)	411
BanII	GRGCYC	2 cut(s)	24, 429
BbsI	GAAGAC	1 cut(s)	518
Bbv12I	GWGCWC	3 cut(s)	24, 411, 429
BccI	CCATC	1 cut(s)	167
BcgI	CGANNNNNNTGC	2 cut(s)	146, 180
BciT130I	CCWGG	1 cut(s)	357
BciVI	GTATCC	1 cut(s)	170
BcnI	CCSGG	1 cut(s)	305
BfaI	CTAG	2 cut(s)	77, 237
BfmI	CTRYAG	1 cut(s)	530
BfuI	GTATCC	1 cut(s)	170
Bme1390I	CCNGG	2 cut(s)	305, 357
Bme18I	GGWCC	2 cut(s)	43, 128
BmeRI	GACNNNNNGTC	1 cut(s)	522
BmgT120I	GGNCC	2 cut(s)	43, 128
BmrFI	CCNGG	2 cut(s)	305, 357
BmrI	ACTGGG	2 cut(s)	116, 430
BmuI	ACTGGG	2 cut(s)	116, 430
BpiI	GAAGAC	1 cut(s)	518
BpmI	CTGGAG	1 cut(s)	238
BpuEI	CTTGAG	1 cut(s)	432
BpuMI	CCSGG	1 cut(s)	305
BsaJI	CCNNGG	1 cut(s)	304
Bsc4I	CCNNNNNNNGG	4 cut(s)	31, 52, 195, 384
Bse1I	ACTGG	3 cut(s)	122, 425, 439
Bse3DI	GCAATG	1 cut(s)	162
BseBI	CCWGG	1 cut(s)	357
BseDI	CCNNGG	1 cut(s)	304
BseGI	GGATG	1 cut(s)	324
BseLI	CCNNNNNNNGG	4 cut(s)	31, 52, 195, 384
BseMI	GCAATG	1 cut(s)	162
BseMII	CTCAG	1 cut(s)	456
BseNI	ACTGG	3 cut(s)	122, 425, 439
BseSI	GKGCMC	1 cut(s)	411
BshFI	GGCC	2 cut(s)	342, 494
BsiHKAI	GWGCWC	3 cut(s)	24, 411, 429
BsiSI	CCGG	1 cut(s)	304
BslFI	GGGAC	1 cut(s)	321
BslI	CCNNNNNNNGG	4 cut(s)	31, 52, 195, 384
BsmFI	GGGAC	1 cut(s)	321
BsnI	GGCC	2 cut(s)	342, 494
Bsp1286I	GDGCHC	3 cut(s)	24, 411, 429
Bsp143I	GATC	2 cut(s)	201, 232
BspACI	CCGC	1 cut(s)	199
BspANI	GGCC	2 cut(s)	342, 494
BspCNI	CTCAG	1 cut(s)	457
BspHI	TCATGA	1 cut(s)	282
BspPI	GGATC	2 cut(s)	209, 227
BsrDI	GCAATG	1 cut(s)	162
BsrI	ACTGG	3 cut(s)	122, 425, 439
BssECI	CCNNGG	1 cut(s)	304
BssMI	GATC	2 cut(s)	201, 232
Bst2UI	CCWGG	1 cut(s)	357
Bst4CI	ACNGT	3 cut(s)	31, 402, 524
Bst6I	CTCTTC	2 cut(s)	223, 340
BstC8I	GCNNGC	1 cut(s)	507
BstDEI	CTNAG	1 cut(s)	465
BstF5I	GGATG	1 cut(s)	324
BstKTI	GATC	2 cut(s)	204, 235
BstMBI	GATC	2 cut(s)	201, 232
BstMWI	GCNNNNNNNGC	2 cut(s)	370, 511
BstNI	CCWGG	1 cut(s)	357
BstNSI	RCATGY	2 cut(s)	442, 463
BstSCI	CCNGG	2 cut(s)	303, 355
BstSFI	CTRYAG	1 cut(s)	530
BstSLI	GKGCMC	1 cut(s)	411
BstV2I	GAAGAC	1 cut(s)	518
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
BsuI	GTATCC	1 cut(s)	170
BsuRI	GGCC	2 cut(s)	342, 494
BtsCI	GGATG	1 cut(s)	324
BtsI	GCAGTG	1 cut(s)	409
BtsIMutI	CAGTG	1 cut(s)	409
Cac8I	GCNNGC	1 cut(s)	507
CciI	TCATGA	1 cut(s)	282
Cfr13I	GGNCC	2 cut(s)	43, 128
CviAII	CATG	6 cut(s)	40, 146, 283, 311, 439, 460
CviJI	RGCY	9 cut(s)	22, 76, 108, 322, 342, 373, 427, 494, 514
CviKI_1	RGCY	9 cut(s)	22, 76, 108, 322, 342, 373, 427, 494, 514
DdeI	CTNAG	1 cut(s)	465
DpnI	GATC	2 cut(s)	203, 234
DpnII	GATC	2 cut(s)	201, 232
DriI	GACNNNNNGTC	1 cut(s)	522
EaeI	YGGCCR	1 cut(s)	340
Eam1104I	CTCTTC	2 cut(s)	223, 340
Eam1105I	GACNNNNNGTC	1 cut(s)	522
EarI	CTCTTC	2 cut(s)	223, 340
EciI	GGCGGA	1 cut(s)	214
Ecl136II	GAGCTC	2 cut(s)	22, 427
Eco24I	GRGCYC	2 cut(s)	24, 429
Eco47I	GGWCC	2 cut(s)	43, 128
Eco53kI	GAGCTC	2 cut(s)	22, 427
Eco57I	CTGAAG	1 cut(s)	94
EcoICRI	GAGCTC	2 cut(s)	22, 427
EcoRII	CCWGG	1 cut(s)	355
EcoT38I	GRGCYC	2 cut(s)	24, 429
FaeI	CATG	6 cut(s)	43, 149, 286, 314, 442, 463
FalI	AAGNNNNNCTT	2 cut(s)	92, 124
FaqI	GGGAC	1 cut(s)	321
FatI	CATG	6 cut(s)	39, 145, 282, 310, 438, 459
FokI	GGATG	1 cut(s)	311
FriOI	GRGCYC	2 cut(s)	24, 429
FspBI	CTAG	2 cut(s)	77, 237
GsuI	CTGGAG	1 cut(s)	238
HaeIII	GGCC	2 cut(s)	342, 494
HapII	CCGG	1 cut(s)	304
Hin1II	CATG	6 cut(s)	43, 149, 286, 314, 442, 463
HinfI	GANTC	1 cut(s)	149
HpaII	CCGG	1 cut(s)	304
Hpy166II	GTNNAC	2 cut(s)	211, 409
Hpy188I	TCNGA	3 cut(s)	113, 387, 466
Hpy188III	TCNNGA	4 cut(s)	217, 272, 283, 449
Hpy8I	GTNNAC	2 cut(s)	211, 409
HpyAV	CCTTC	1 cut(s)	484
HpyCH4III	ACNGT	3 cut(s)	31, 402, 524
HpyCH4V	TGCA	3 cut(s)	167, 364, 409
HpyF10VI	GCNNNNNNNGC	2 cut(s)	370, 511
HpyF3I	CTNAG	1 cut(s)	465
Hsp92II	CATG	6 cut(s)	43, 149, 286, 314, 442, 463
Kzo9I	GATC	2 cut(s)	201, 232
LmnI	GCTCC	4 cut(s)	27, 219, 424, 432
MaeI	CTAG	2 cut(s)	77, 237
MaeIII	GTNAC	1 cut(s)	441
MalI	GATC	2 cut(s)	203, 234
MboI	GATC	2 cut(s)	201, 232
MboII	GAAGA	5 cut(s)	16, 68, 240, 357, 518
MflI	RGATCY	1 cut(s)	232
MhlI	GDGCHC	3 cut(s)	24, 411, 429
MluCI	AATT	4 cut(s)	263, 365, 381, 470
MmeI	TCCRAC	1 cut(s)	106
MnlI	CCTC	5 cut(s)	151, 253, 311, 341, 456
MseI	TTAA	1 cut(s)	417
MspI	CCGG	1 cut(s)	304
MspR9I	CCNGG	2 cut(s)	305, 357
MvaI	CCWGG	1 cut(s)	357
MwoI	GCNNNNNNNGC	2 cut(s)	370, 511
NciI	CCSGG	1 cut(s)	305
NdeII	GATC	2 cut(s)	201, 232
NlaIII	CATG	6 cut(s)	43, 149, 286, 314, 442, 463
NspI	RCATGY	2 cut(s)	442, 463
PagI	TCATGA	1 cut(s)	282
PciI	ACATGT	1 cut(s)	459
PfeI	GAWTC	1 cut(s)	149
PflMI	CCANNNNNTGG	2 cut(s)	31, 195
PscI	ACATGT	1 cut(s)	459
Psp124BI	GAGCTC	2 cut(s)	24, 429
Psp6I	CCWGG	1 cut(s)	355
PspGI	CCWGG	1 cut(s)	355
PspPI	GGNCC	2 cut(s)	43, 128
PsuI	RGATCY	1 cut(s)	232
SacI	GAGCTC	2 cut(s)	24, 429
SaqAI	TTAA	1 cut(s)	417
Sau3AI	GATC	2 cut(s)	201, 232
Sau96I	GGNCC	2 cut(s)	43, 128
ScrFI	CCNGG	2 cut(s)	305, 357
SduI	GDGCHC	3 cut(s)	24, 411, 429
SfcI	CTRYAG	1 cut(s)	530
SinI	GGWCC	2 cut(s)	43, 128
SmlI	CTYRAG	1 cut(s)	447
SmoI	CTYRAG	1 cut(s)	447
Sse9I	AATT	4 cut(s)	263, 365, 381, 470
SsiI	CCGC	1 cut(s)	199
SspMI	CTAG	2 cut(s)	77, 237
SstI	GAGCTC	2 cut(s)	24, 429
StyD4I	CCNGG	2 cut(s)	303, 355
TaaI	ACNGT	3 cut(s)	31, 402, 524
TaqI	TCGA	3 cut(s)	156, 248, 488
TaqII	GACCGA	1 cut(s)	60
TasI	AATT	4 cut(s)	263, 365, 381, 470
TfiI	GAWTC	1 cut(s)	149
Tru1I	TTAA	1 cut(s)	417
Tru9I	TTAA	1 cut(s)	417
TscAI	CASTG	1 cut(s)	416
TspDTI	ATGAA	4 cut(s)	17, 162, 271, 299
TspRI	CASTG	1 cut(s)	416
Van91I	CCANNNNNTGG	2 cut(s)	31, 195
VneI	GTGCAC	1 cut(s)	407
VpaK11BI	GGWCC	2 cut(s)	43, 128
XapI	RAATTY	2 cut(s)	263, 470
XceI	RCATGY	2 cut(s)	442, 463
XcmI	CCANNNNNNNNNTGG	1 cut(s)	32
XspI	CTAG	2 cut(s)	77, 237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.