Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0000282

Physical Location & Seq

Genomic Coordinates Forward (+)

30573057 .. 30573548

Gene Structure 492 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1224700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGAAGTATCTCCAACAAGAGCTTCGAACTGTGATCGGGATGGACCAGATGATGGAAGAGAATGATTTACCAAGGTTGCGTTACTTAAATATGGTGGTCATGGAGAGCTTTAGACTACACCCAGCTGGATCGTTGCTAATCCCTCGTGAATCCACGCAGGACAATACAATCGATGGATATTACATACCTAAGAAATCAAGAATCCTAACAAACACTTGGGCTATTGGGAGAGATCCCAATGTTTGGTCGGATAATGTGCAACAATTTTACCCTGAAAGGTTTATAAATAGCAATGTTGACGTCCTGGGACATGACTTCCAGCTTCTACCTTTCGGGTCCCGCCGAAGAGGGTACCCTGGTATACAGTTAGGGCTAACCACAGTTCGGCTGGCTTTGGCGAACTTGGTCCACTGCTTTAACTGGGACCTCCCAAGCGGCCTTCTACCTGAAGACGTGGACATGGCTGAGACGTTCGGCATAGCGCCGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

164

Amino Acids

18.73

Weight (kDa)

5.31

Isoelectric Point (pI)

41.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	2 - 157	3.7e-38	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000282)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12350 FvH4_5g12380 FvH4_5g12392 FvH4_5g12400 FvH4_5g12430
malus_domestica	MD06G1213300.v1.1 MD06G1213500.v1.1 MD06G1213700.v1.1 MD06G1213800.v1.1 MD06G1213900.v1.1 MD06G1214000.v1.1 MD06G1214400.v1.1 MD14G1224300.v1.1 MD14G1224400.v1.1 MD14G1224600.v1.1 MD14G1224700.v1.1 MD14G1224800.v1.1 MD14G1224900.v1.1 MD14G1225100.v1.1 MD14G1225400.v1.1
prunus_persica	Prupe.5G219700_v2.0.a1 Prupe.5G219800_v2.0.a1 Prupe.5G219900_v2.0.a1 Prupe.8G078500_v2.0.a1
pyrus_communis	pycom06g19100 pycom14g18590 pycom14g18600 pycom14g18610 pycom14g18660
rosa_chinensis	RchiOBHm_Chr0c12g0499591 RchiOBHm_Chr2g0140591 RchiOBHm_Chr2g0140631 RchiOBHm_Chr2g0140641 RchiOBHm_Chr2g0140651 RchiOBHm_Chr4g0417991 RchiOBHm_Chr4g0418001 RchiOBHm_Chr4g0418101 RchiOBHm_Chr4g0418111 RchiOBHm_Chr4g0418121 RchiOBHm_Chr6g0280191 RchiOBHm_Chr6g0280241 RchiOBHm_Chr6g0280251 RchiOBHm_Chr7g0185031 RchiOBHm_Chr7g0185051 RchiOBHm_Chr7g0185081 RchiOBHm_Chr7g0185091 RchiOBHm_Chr7g0185111 RchiOBHm_Chr7g0185131 RchiOBHm_Chr7g0185151 RchiOBHm_Chr7g0185161 RchiOBHm_Chr7g0185191 RchiOBHm_Chr7g0222431
rosa_laevigata	RLG00000002061 RLG00000004934 RLG00000004935 RLG00000004937 RLG00000013071 RLG00000013077 RLG00000019621 RLG00000019881 RLG00000019884 RLG00000019887 RLG00000019888 RLG00000028839
rosa_multiflora	Rmu_co8014370.1_g000001 Rmu_co8334683.1_g000001 Rmu_co8440383.1_g000001 Rmu_sc0002826.1_g000008 Rmu_sc0002826.1_g000009 Rmu_sc0002826.1_g000030 Rmu_sc0004483.1_g000005 Rmu_sc0004638.1_g000003 Rmu_sc0004638.1_g000004 Rmu_sc0005756.1_g000003 Rmu_sc0006493.1_g000023 Rmu_sc0006493.1_g000024 Rmu_sc0007137.1_g000017 Rmu_sc0008496.1_g000022 Rmu_sc0008769.1_g000003 Rmu_sc0013612.1_g000026 Rmu_sc0013864.1_g000001 Rmu_sc0013864.1_g000007 Rmu_sc0013864.1_g000008 Rmu_sc0030128.1_g000001 Rmu_sc0041660.1_g000001 Rmu_ssc0000289.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104640 Rroxscaffold_3G00253970 Rroxscaffold_3G00269170 Rroxscaffold_3G00269200 Rroxscaffold_3G00269210 Rroxscaffold_3G00269220 Rroxscaffold_3G00269230 Rroxscaffold_7G00188320
rosa_rugosa	Rorug01G0052300 Rorug05G0212000 Rorug06G0130700 Rorug06G0131100 Rorug06G0466200 Rorug06G0466300 Rorug06G0466400 Rorug06G0466500 Rorug06G0466700 Rorug07G0208500 Rorug07G0294600
rosa_samantha	Rh4AG137600 Rh6DG237300 Rh6DG237800 Rh7AG076200 Rh7AG076300 Rh7AG076500 Rh7AG076600 Rh7AG350700 Rh7BG070800 Rh7BG070900 Rh7BG071000 Rh7BG071100
rosa_wichuraiana	Rw6G020990 Rw6G021010 Rw7G005900 Rw7G005910 Rw7G005920 Rw7G005940 Rw7G005950 Rw7G005970 Rw7G029600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	284
AatII	GACGTC	1 cut(s)	303
Acc65I	GGTACC	1 cut(s)	351
AccB1I	GGYRCC	1 cut(s)	351
AccB7I	CCANNNNNTGG	2 cut(s)	52, 243
AccI	GTMKAC	1 cut(s)	361
AciI	CCGC	2 cut(s)	340, 435
AclWI	GGATC	2 cut(s)	136, 227
AcuI	CTGAAG	1 cut(s)	468
AcyI	GRCGYC	1 cut(s)	300
AfaI	GTAC	1 cut(s)	353
AfiI	CCNNNNNNNGG	3 cut(s)	52, 243, 384
AjiI	CACGTC	1 cut(s)	454
AjnI	CCWGG	2 cut(s)	303, 355
AjuI	GAANNNNNNNTTGG	1 cut(s)	38
AluBI	AGCT	4 cut(s)	22, 108, 125, 322
AluI	AGCT	4 cut(s)	22, 108, 125, 322
Alw26I	GTCTC	1 cut(s)	461
AlwI	GGATC	2 cut(s)	136, 227
AoxI	GGCC	1 cut(s)	436
Asp718I	GGTACC	1 cut(s)	351
AspLEI	GCGC	1 cut(s)	484
AspS9I	GGNCC	4 cut(s)	43, 336, 406, 424
AsuII	TTCGAA	1 cut(s)	25
AvaII	GGWCC	4 cut(s)	43, 336, 406, 424
BaeI	ACNNNNGTAYC	2 cut(s)	343, 376
BanI	GGYRCC	1 cut(s)	351
BauI	CACGAG	1 cut(s)	144
BbsI	GAAGAC	1 cut(s)	456
BccI	CCATC	3 cut(s)	34, 46, 167
BceAI	ACGGC	1 cut(s)	469
BciT130I	CCWGG	2 cut(s)	305, 357
BcoDI	GTCTC	1 cut(s)	461
BfoI	RGCGCY	1 cut(s)	485
BisI	GCNGC	1 cut(s)	436
BlsI	GCNGC	1 cut(s)	437
Bme1390I	CCNGG	2 cut(s)	305, 357
Bme18I	GGWCC	4 cut(s)	43, 336, 406, 424
BmgBI	CACGTC	1 cut(s)	454
BmgT120I	GGNCC	4 cut(s)	43, 336, 406, 424
BmiI	GGNNCC	4 cut(s)	337, 338, 353, 425
BmrFI	CCNGG	2 cut(s)	305, 357
BmrI	ACTGGG	1 cut(s)	430
BmuI	ACTGGG	1 cut(s)	430
BpiI	GAAGAC	1 cut(s)	456
Bpu14I	TTCGAA	1 cut(s)	25
Bsa29I	ATCGAT	1 cut(s)	171
BsaHI	GRCGYC	1 cut(s)	300
BsaJI	CCNNGG	3 cut(s)	71, 304, 355
Bsc4I	CCNNNNNNNGG	3 cut(s)	52, 243, 384
Bse1I	ACTGG	1 cut(s)	425
Bse3DI	GCAATG	1 cut(s)	298
BseBI	CCWGG	2 cut(s)	305, 357
BseCI	ATCGAT	1 cut(s)	171
BseDI	CCNNGG	3 cut(s)	71, 304, 355
BseGI	GGATG	1 cut(s)	45
BseLI	CCNNNNNNNGG	3 cut(s)	52, 243, 384
BseMI	GCAATG	1 cut(s)	298
BseMII	CTCAG	1 cut(s)	456
BseNI	ACTGG	1 cut(s)	425
BseYI	CCCAGC	1 cut(s)	121
BshFI	GGCC	1 cut(s)	438
BshNI	GGYRCC	1 cut(s)	351
BshVI	ATCGAT	1 cut(s)	171
BslFI	GGGAC	3 cut(s)	321, 322, 437
BslI	CCNNNNNNNGG	3 cut(s)	52, 243, 384
BsmAI	GTCTC	1 cut(s)	461
BsmBI	CGTCTC	1 cut(s)	461
BsmFI	GGGAC	3 cut(s)	321, 322, 437
BsnI	GGCC	1 cut(s)	438
Bsp119I	TTCGAA	1 cut(s)	25
Bsp143I	GATC	3 cut(s)	33, 128, 232
BspACI	CCGC	2 cut(s)	340, 435
BspANI	GGCC	1 cut(s)	438
BspCNI	CTCAG	1 cut(s)	457
BspDI	ATCGAT	1 cut(s)	171
BspLI	GGNNCC	4 cut(s)	337, 338, 353, 425
BspPI	GGATC	2 cut(s)	136, 227
BspT104I	TTCGAA	1 cut(s)	25
BspT107I	GGYRCC	1 cut(s)	351
BsrDI	GCAATG	1 cut(s)	298
BsrI	ACTGG	1 cut(s)	425
BssECI	CCNNGG	3 cut(s)	71, 304, 355
BssMI	GATC	3 cut(s)	33, 128, 232
BssNAI	GTATAC	1 cut(s)	362
BssNI	GRCGYC	1 cut(s)	300
BssSI	CACGAG	1 cut(s)	144
BssT1I	CCWWGG	1 cut(s)	71
Bst1107I	GTATAC	1 cut(s)	362
Bst2BI	CACGAG	1 cut(s)	144
Bst2UI	CCWGG	2 cut(s)	305, 357
Bst4CI	ACNGT	3 cut(s)	31, 366, 382
Bst6I	CTCTTC	2 cut(s)	51, 340
BstACI	GRCGYC	1 cut(s)	300
BstBI	TTCGAA	1 cut(s)	25
BstC8I	GCNNGC	1 cut(s)	390
BstDEI	CTNAG	2 cut(s)	189, 465
BstF5I	GGATG	1 cut(s)	45
BstH2I	RGCGCY	1 cut(s)	485
BstHHI	GCGC	1 cut(s)	484
BstKTI	GATC	3 cut(s)	36, 131, 235
BstMAI	GTCTC	1 cut(s)	461
BstMBI	GATC	3 cut(s)	33, 128, 232
BstNI	CCWGG	2 cut(s)	305, 357
BstSCI	CCNGG	2 cut(s)	303, 355
BstV2I	GAAGAC	1 cut(s)	456
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
BstZ17I	GTATAC	1 cut(s)	362
Bsu15I	ATCGAT	1 cut(s)	171
BsuRI	GGCC	1 cut(s)	438
BsuTUI	ATCGAT	1 cut(s)	171
BtrI	CACGTC	1 cut(s)	454
BtsCI	GGATG	1 cut(s)	45
BtsI	GCAGTG	1 cut(s)	409
BtsIMutI	CAGTG	1 cut(s)	409
Cac8I	GCNNGC	1 cut(s)	390
CfoI	GCGC	1 cut(s)	484
Cfr13I	GGNCC	4 cut(s)	43, 336, 406, 424
ClaI	ATCGAT	1 cut(s)	171
Csp6I	GTAC	1 cut(s)	352
CviAII	CATG	3 cut(s)	100, 311, 460
CviQI	GTAC	1 cut(s)	352
DdeI	CTNAG	2 cut(s)	189, 465
DpnI	GATC	3 cut(s)	35, 130, 234
DpnII	GATC	3 cut(s)	33, 128, 232
Eam1104I	CTCTTC	2 cut(s)	51, 340
EarI	CTCTTC	2 cut(s)	51, 340
Eco130I	CCWWGG	1 cut(s)	71
Eco47I	GGWCC	4 cut(s)	43, 336, 406, 424
Eco57I	CTGAAG	1 cut(s)	468
EcoO109I	RGGNCCY	2 cut(s)	336, 424
EcoRII	CCWGG	2 cut(s)	303, 355
EcoT14I	CCWWGG	1 cut(s)	71
ErhI	CCWWGG	1 cut(s)	71
Esp3I	CGTCTC	1 cut(s)	461
FaeI	CATG	3 cut(s)	103, 314, 463
FaiI	YATR	9 cut(s)	92, 101, 185, 284, 312, 362, 461, 479, 490
FaqI	GGGAC	3 cut(s)	321, 322, 437
FatI	CATG	3 cut(s)	99, 310, 459
FauI	CCCGC	1 cut(s)	347
FblI	GTMKAC	1 cut(s)	361
Fnu4HI	GCNGC	1 cut(s)	436
FokI	GGATG	1 cut(s)	52
Fsp4HI	GCNGC	1 cut(s)	436
GlaI	GCGC	1 cut(s)	483
GluI	GCNGC	1 cut(s)	436
GsaI	CCCAGC	1 cut(s)	125
HaeII	RGCGCY	1 cut(s)	485
HaeIII	GGCC	1 cut(s)	438
HhaI	GCGC	1 cut(s)	484
Hin1I	GRCGYC	1 cut(s)	300
Hin1II	CATG	3 cut(s)	103, 314, 463
Hin6I	GCGC	1 cut(s)	482
HinP1I	GCGC	1 cut(s)	482
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HinfI	GANTC	2 cut(s)	149, 201
Hpy166II	GTNNAC	4 cut(s)	298, 362, 409, 457
Hpy188I	TCNGA	1 cut(s)	250
Hpy188III	TCNNGA	3 cut(s)	37, 146, 198
Hpy8I	GTNNAC	4 cut(s)	298, 362, 409, 457
HpyAV	CCTTC	1 cut(s)	449
HpyCH4III	ACNGT	3 cut(s)	31, 366, 382
HpyCH4IV	ACGT	3 cut(s)	300, 453, 470
HpyCH4V	TGCA	1 cut(s)	259
HpyF3I	CTNAG	2 cut(s)	189, 465
HpySE526I	ACGT	3 cut(s)	300, 453, 470
Hsp92I	GRCGYC	1 cut(s)	300
Hsp92II	CATG	3 cut(s)	103, 314, 463
HspAI	GCGC	1 cut(s)	482
KflI	GGGWCCC	1 cut(s)	336
KpnI	GGTACC	1 cut(s)	355
Kzo9I	GATC	3 cut(s)	33, 128, 232
MaeII	ACGT	3 cut(s)	300, 453, 470
MaeIII	GTNAC	1 cut(s)	80
MalI	GATC	3 cut(s)	35, 130, 234
MboI	GATC	3 cut(s)	33, 128, 232
MboII	GAAGA	3 cut(s)	68, 357, 461
MflI	RGATCY	1 cut(s)	232
MluCI	AATT	1 cut(s)	263
MmeI	TCCRAC	2 cut(s)	37, 228
MnlI	CCTC	3 cut(s)	153, 341, 437
MseI	TTAA	2 cut(s)	86, 417
MspA1I	CMGCKG	1 cut(s)	125
MspR9I	CCNGG	2 cut(s)	305, 357
MvaI	CCWGG	2 cut(s)	305, 357
NdeII	GATC	3 cut(s)	33, 128, 232
NlaIII	CATG	3 cut(s)	103, 314, 463
NlaIV	GGNNCC	4 cut(s)	337, 338, 353, 425
NspV	TTCGAA	1 cut(s)	25
PfeI	GAWTC	2 cut(s)	149, 201
PflMI	CCANNNNNTGG	2 cut(s)	52, 243
PkrI	GCNGC	1 cut(s)	437
PpuMI	RGGWCCY	2 cut(s)	336, 424
PsiI	TTATAA	1 cut(s)	284
Psp5II	RGGWCCY	2 cut(s)	336, 424
Psp6I	CCWGG	2 cut(s)	303, 355
PspFI	CCCAGC	1 cut(s)	121
PspGI	CCWGG	2 cut(s)	303, 355
PspN4I	GGNNCC	4 cut(s)	337, 338, 353, 425
PspPI	GGNCC	4 cut(s)	43, 336, 406, 424
PspPPI	RGGWCCY	2 cut(s)	336, 424
PsuI	RGATCY	1 cut(s)	232
PvuII	CAGCTG	1 cut(s)	125
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
SaqAI	TTAA	2 cut(s)	86, 417
SatI	GCNGC	1 cut(s)	436
Sau3AI	GATC	3 cut(s)	33, 128, 232
Sau96I	GGNCC	4 cut(s)	43, 336, 406, 424
ScrFI	CCNGG	2 cut(s)	305, 357
SfuI	TTCGAA	1 cut(s)	25
SinI	GGWCC	4 cut(s)	43, 336, 406, 424
Sse9I	AATT	1 cut(s)	263
SsiI	CCGC	2 cut(s)	340, 435
StyD4I	CCNGG	2 cut(s)	303, 355
StyI	CCWWGG	1 cut(s)	71
TaaI	ACNGT	3 cut(s)	31, 366, 382
TaiI	ACGT	3 cut(s)	303, 456, 473
TaqI	TCGA	2 cut(s)	25, 171
TasI	AATT	1 cut(s)	263
TauI	GCSGC	1 cut(s)	438
TfiI	GAWTC	2 cut(s)	149, 201
Tru1I	TTAA	2 cut(s)	86, 417
Tru9I	TTAA	2 cut(s)	86, 417
TscAI	CASTG	1 cut(s)	416
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	416
Van91I	CCANNNNNTGG	2 cut(s)	52, 243
VpaK11BI	GGWCC	4 cut(s)	43, 336, 406, 424
XcmI	CCANNNNNNNNNTGG	1 cut(s)	385
XmiI	GTMKAC	1 cut(s)	361
ZraI	GACGTC	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.