Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002826.1

Orthogroup ID

OG0000282

Physical Location & Seq

Genomic Coordinates Reverse (-)

42682 .. 43266

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002826.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atgccagaaagaaggagtcctaccatcctcctggttctcctcacatgcctttggtcactcatctctgcctcctcaaaatcaaaacacagaaaactaccacccggccctcggtcactgccaataacgggaaaccttcatatgctagtcaacctcccccatcgaagcctccaacaattggccaaaaaatatggacacatcatgtctattcgtctaggcaatgtttctaccatagttgtcttctccccacaagccgcagagctattcctcaaaactcatgacactaatttcgccagccggcccaaaatccaagcctcagagtacctgtcctacggcacaaagggcatggccttttcccaatatggtccctattggcgccctatgtggaagctctacacgcctcatctattctgtccagcaaaaatggaggctttcaggctgctgcgaaaggaggaactgggagtgctggtaagaaagctaaagagagctgcaggagaaggtggagtggtggatgttagtgagaagattggtgtgatgaatgaggacataacgtataggatggtgttgggctgtaaaaggtacgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

194

Amino Acids

22.0

Weight (kDa)

10.12

Isoelectric Point (pI)

47.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000282)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12350 FvH4_5g12380 FvH4_5g12392 FvH4_5g12400 FvH4_5g12430
malus_domestica	MD06G1213300.v1.1 MD06G1213500.v1.1 MD06G1213700.v1.1 MD06G1213800.v1.1 MD06G1213900.v1.1 MD06G1214000.v1.1 MD06G1214400.v1.1 MD14G1224300.v1.1 MD14G1224400.v1.1 MD14G1224600.v1.1 MD14G1224700.v1.1 MD14G1224800.v1.1 MD14G1224900.v1.1 MD14G1225100.v1.1 MD14G1225400.v1.1
prunus_persica	Prupe.5G219700_v2.0.a1 Prupe.5G219800_v2.0.a1 Prupe.5G219900_v2.0.a1 Prupe.8G078500_v2.0.a1
pyrus_communis	pycom06g19100 pycom14g18590 pycom14g18600 pycom14g18610 pycom14g18660
rosa_chinensis	RchiOBHm_Chr0c12g0499591 RchiOBHm_Chr2g0140591 RchiOBHm_Chr2g0140631 RchiOBHm_Chr2g0140641 RchiOBHm_Chr2g0140651 RchiOBHm_Chr4g0417991 RchiOBHm_Chr4g0418001 RchiOBHm_Chr4g0418101 RchiOBHm_Chr4g0418111 RchiOBHm_Chr4g0418121 RchiOBHm_Chr6g0280191 RchiOBHm_Chr6g0280241 RchiOBHm_Chr6g0280251 RchiOBHm_Chr7g0185031 RchiOBHm_Chr7g0185051 RchiOBHm_Chr7g0185081 RchiOBHm_Chr7g0185091 RchiOBHm_Chr7g0185111 RchiOBHm_Chr7g0185131 RchiOBHm_Chr7g0185151 RchiOBHm_Chr7g0185161 RchiOBHm_Chr7g0185191 RchiOBHm_Chr7g0222431
rosa_laevigata	RLG00000002061 RLG00000004934 RLG00000004935 RLG00000004937 RLG00000013071 RLG00000013077 RLG00000019621 RLG00000019881 RLG00000019884 RLG00000019887 RLG00000019888 RLG00000028839
rosa_multiflora	Rmu_co8014370.1_g000001 Rmu_co8334683.1_g000001 Rmu_co8440383.1_g000001 Rmu_sc0002826.1_g000008 Rmu_sc0002826.1_g000009 Rmu_sc0002826.1_g000030 Rmu_sc0004483.1_g000005 Rmu_sc0004638.1_g000003 Rmu_sc0004638.1_g000004 Rmu_sc0005756.1_g000003 Rmu_sc0006493.1_g000023 Rmu_sc0006493.1_g000024 Rmu_sc0007137.1_g000017 Rmu_sc0008496.1_g000022 Rmu_sc0008769.1_g000003 Rmu_sc0013612.1_g000026 Rmu_sc0013864.1_g000001 Rmu_sc0013864.1_g000007 Rmu_sc0013864.1_g000008 Rmu_sc0030128.1_g000001 Rmu_sc0041660.1_g000001 Rmu_ssc0000289.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104640 Rroxscaffold_3G00253970 Rroxscaffold_3G00269170 Rroxscaffold_3G00269200 Rroxscaffold_3G00269210 Rroxscaffold_3G00269220 Rroxscaffold_3G00269230 Rroxscaffold_7G00188320
rosa_rugosa	Rorug01G0052300 Rorug05G0212000 Rorug06G0130700 Rorug06G0131100 Rorug06G0466200 Rorug06G0466300 Rorug06G0466400 Rorug06G0466500 Rorug06G0466700 Rorug07G0208500 Rorug07G0294600
rosa_samantha	Rh4AG137600 Rh6DG237300 Rh6DG237800 Rh7AG076200 Rh7AG076300 Rh7AG076500 Rh7AG076600 Rh7AG350700 Rh7BG070800 Rh7BG070900 Rh7BG071000 Rh7BG071100
rosa_wichuraiana	Rw6G020990 Rw6G021010 Rw7G005900 Rw7G005910 Rw7G005920 Rw7G005940 Rw7G005950 Rw7G005970 Rw7G029600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	372
AccB7I	CCANNNNNTGG	1 cut(s)	175
AciI	CCGC	1 cut(s)	252
AcoI	YGGCCR	1 cut(s)	177
AcyI	GRCGYC	1 cut(s)	373
AfaI	GTAC	2 cut(s)	320, 578
AfiI	CCNNNNNNNGG	3 cut(s)	108, 125, 175
AjnI	CCWGG	1 cut(s)	30
AluBI	AGCT	4 cut(s)	259, 388, 475, 485
AluI	AGCT	4 cut(s)	259, 388, 475, 485
AoxI	GGCC	4 cut(s)	103, 177, 296, 345
ApeKI	GCWGC	3 cut(s)	436, 439, 485
ArsI	GACNNNNNNTTYG	2 cut(s)	269, 301
AspLEI	GCGC	1 cut(s)	375
AspS9I	GGNCC	3 cut(s)	104, 297, 362
AsuC2I	CCSGG	1 cut(s)	102
AvaII	GGWCC	1 cut(s)	362
BalI	TGGCCA	1 cut(s)	179
BanI	GGYRCC	1 cut(s)	372
BarI	GAAGNNNNNNTAC	1 cut(s)	36
BbsI	GAAGAC	1 cut(s)	229
BbvI	GCAGC	3 cut(s)	423, 426, 472
BccI	CCATC	3 cut(s)	32, 165, 550
BceAI	ACGGC	1 cut(s)	346
BciT130I	CCWGG	1 cut(s)	32
BcnI	CCSGG	1 cut(s)	102
BfaI	CTAG	2 cut(s)	143, 212
BfmI	CTRYAG	1 cut(s)	486
BfoI	RGCGCY	1 cut(s)	376
BisI	GCNGC	4 cut(s)	252, 437, 440, 486
BlsI	GCNGC	4 cut(s)	253, 438, 441, 487
Bme1390I	CCNGG	2 cut(s)	32, 102
Bme18I	GGWCC	1 cut(s)	362
BmgT120I	GGNCC	3 cut(s)	104, 297, 362
BmiI	GGNNCC	2 cut(s)	364, 374
BmrFI	CCNGG	2 cut(s)	32, 102
BmrI	ACTGGG	1 cut(s)	464
BmuI	ACTGGG	1 cut(s)	464
BpiI	GAAGAC	1 cut(s)	229
BpuMI	CCSGG	1 cut(s)	102
BsaHI	GRCGYC	1 cut(s)	373
BsaJI	CCNNGG	1 cut(s)	107
BsaXI	ACNNNNNCTCC	2 cut(s)	450, 480
Bsc4I	CCNNNNNNNGG	3 cut(s)	108, 125, 175
Bse118I	RCCGGY	1 cut(s)	294
Bse1I	ACTGG	1 cut(s)	459
Bse3DI	GCAATG	1 cut(s)	223
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	1 cut(s)	107
BseGI	GGATG	3 cut(s)	24, 514, 561
BseLI	CCNNNNNNNGG	3 cut(s)	108, 125, 175
BseMI	GCAATG	1 cut(s)	223
BseMII	CTCAG	1 cut(s)	327
BseNI	ACTGG	1 cut(s)	459
BseRI	GAGGAG	2 cut(s)	29, 61
BseXI	GCAGC	3 cut(s)	423, 426, 472
BshFI	GGCC	4 cut(s)	105, 179, 298, 347
BshNI	GGYRCC	1 cut(s)	372
BsiSI	CCGG	2 cut(s)	102, 295
BslFI	GGGAC	1 cut(s)	348
BslI	CCNNNNNNNGG	3 cut(s)	108, 125, 175
BsmFI	GGGAC	1 cut(s)	348
BsnI	GGCC	4 cut(s)	105, 179, 298, 347
BspACI	CCGC	1 cut(s)	252
BspANI	GGCC	4 cut(s)	105, 179, 298, 347
BspCNI	CTCAG	1 cut(s)	326
BspHI	TCATGA	1 cut(s)	274
BspLI	GGNNCC	2 cut(s)	364, 374
BspMAI	CTGCAG	1 cut(s)	490
BspT107I	GGYRCC	1 cut(s)	372
BsrDI	GCAATG	1 cut(s)	223
BsrFI	RCCGGY	1 cut(s)	294
BsrI	ACTGG	1 cut(s)	459
BssAI	RCCGGY	1 cut(s)	294
BssECI	CCNNGG	1 cut(s)	107
BssNI	GRCGYC	1 cut(s)	373
Bst2UI	CCWGG	1 cut(s)	32
BstACI	GRCGYC	1 cut(s)	373
BstC8I	GCNNGC	2 cut(s)	292, 296
BstDEI	CTNAG	1 cut(s)	313
BstF5I	GGATG	3 cut(s)	24, 514, 561
BstH2I	RGCGCY	1 cut(s)	376
BstHHI	GCGC	1 cut(s)	375
BstMWI	GCNNNNNNNGC	2 cut(s)	339, 394
BstNI	CCWGG	1 cut(s)	32
BstNSI	RCATGY	1 cut(s)	48
BstSCI	CCNGG	2 cut(s)	30, 100
BstSFI	CTRYAG	1 cut(s)	486
BstV1I	GCAGC	3 cut(s)	423, 426, 472
BstV2I	GAAGAC	1 cut(s)	229
BstXI	CCANNNNNNTGG	1 cut(s)	31
BsuRI	GGCC	4 cut(s)	105, 179, 298, 347
BtsCI	GGATG	3 cut(s)	24, 514, 561
BtsI	GCAGTG	1 cut(s)	113
BtsIMutI	CAGTG	1 cut(s)	113
Cac8I	GCNNGC	2 cut(s)	292, 296
CciI	TCATGA	1 cut(s)	274
CfoI	GCGC	1 cut(s)	375
Cfr10I	RCCGGY	1 cut(s)	294
Cfr13I	GGNCC	3 cut(s)	104, 297, 362
Csp6I	GTAC	2 cut(s)	319, 577
CviAII	CATG	4 cut(s)	45, 199, 275, 343
CviQI	GTAC	2 cut(s)	319, 577
DdeI	CTNAG	1 cut(s)	313
DinI	GGCGCC	1 cut(s)	374
EaeI	YGGCCR	1 cut(s)	177
Eco47I	GGWCC	1 cut(s)	362
EcoRII	CCWGG	1 cut(s)	30
EgeI	GGCGCC	1 cut(s)	374
EheI	GGCGCC	1 cut(s)	374
FaeI	CATG	4 cut(s)	48, 202, 278, 346
FaqI	GGGAC	1 cut(s)	348
FatI	CATG	4 cut(s)	44, 198, 274, 342
FauNDI	CATATG	1 cut(s)	138
Fnu4HI	GCNGC	4 cut(s)	252, 437, 440, 486
FokI	GGATG	3 cut(s)	11, 521, 568
Fsp4HI	GCNGC	4 cut(s)	252, 437, 440, 486
FspBI	CTAG	2 cut(s)	143, 212
GlaI	GCGC	1 cut(s)	374
GluI	GCNGC	4 cut(s)	252, 437, 440, 486
HaeII	RGCGCY	1 cut(s)	376
HaeIII	GGCC	4 cut(s)	105, 179, 298, 347
HapII	CCGG	2 cut(s)	102, 295
HhaI	GCGC	1 cut(s)	375
Hin1I	GRCGYC	1 cut(s)	373
Hin1II	CATG	4 cut(s)	48, 202, 278, 346
Hin6I	GCGC	1 cut(s)	373
HinP1I	GCGC	1 cut(s)	373
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HinfI	GANTC	1 cut(s)	16
HpaII	CCGG	2 cut(s)	102, 295
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	1 cut(s)	316
Hpy188III	TCNNGA	1 cut(s)	275
Hpy8I	GTNNAC	1 cut(s)	148
HpyAV	CCTTC	3 cut(s)	6, 143, 488
HpyCH4IV	ACGT	2 cut(s)	548, 579
HpyCH4V	TGCA	1 cut(s)	488
HpyF10VI	GCNNNNNNNGC	2 cut(s)	339, 394
HpyF3I	CTNAG	1 cut(s)	313
HpySE526I	ACGT	2 cut(s)	548, 579
Hsp92I	GRCGYC	1 cut(s)	373
Hsp92II	CATG	4 cut(s)	48, 202, 278, 346
HspAI	GCGC	1 cut(s)	373
KasI	GGCGCC	1 cut(s)	372
KroI	GCCGGC	1 cut(s)	294
KroNI	GCCGGC	1 cut(s)	296
Lsp1109I	GCAGC	3 cut(s)	423, 426, 472
MaeI	CTAG	2 cut(s)	143, 212
MaeII	ACGT	2 cut(s)	548, 579
MaeIII	GTNAC	2 cut(s)	54, 111
MboII	GAAGA	2 cut(s)	229, 532
MfeI	CAATTG	1 cut(s)	173
MlsI	TGGCCA	1 cut(s)	179
MluCI	AATT	2 cut(s)	173, 283
MluNI	TGGCCA	1 cut(s)	179
Mly113I	GGCGCC	1 cut(s)	373
MlyI	GAGTC	1 cut(s)	25
MmeI	TCCRAC	1 cut(s)	193
Mox20I	TGGCCA	1 cut(s)	179
MroNI	GCCGGC	1 cut(s)	294
MscI	TGGCCA	1 cut(s)	179
Msp20I	TGGCCA	1 cut(s)	179
MspI	CCGG	2 cut(s)	102, 295
MspR9I	CCNGG	2 cut(s)	32, 102
MunI	CAATTG	1 cut(s)	173
MvaI	CCWGG	1 cut(s)	32
MwoI	GCNNNNNNNGC	2 cut(s)	339, 394
NaeI	GCCGGC	1 cut(s)	296
NarI	GGCGCC	1 cut(s)	373
NciI	CCSGG	1 cut(s)	102
NdeI	CATATG	1 cut(s)	138
NgoMIV	GCCGGC	1 cut(s)	294
NlaIII	CATG	4 cut(s)	48, 202, 278, 346
NlaIV	GGNNCC	2 cut(s)	364, 374
NmuCI	GTSAC	2 cut(s)	54, 111
NspI	RCATGY	1 cut(s)	48
PagI	TCATGA	1 cut(s)	274
PdiI	GCCGGC	1 cut(s)	296
PflMI	CCANNNNNTGG	1 cut(s)	175
PkrI	GCNGC	4 cut(s)	253, 438, 441, 487
PleI	GAGTC	1 cut(s)	24
PluTI	GGCGCC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	24
Psp6I	CCWGG	1 cut(s)	30
PspGI	CCWGG	1 cut(s)	30
PspN4I	GGNNCC	2 cut(s)	364, 374
PspPI	GGNCC	3 cut(s)	104, 297, 362
PstI	CTGCAG	1 cut(s)	490
RsaI	GTAC	2 cut(s)	320, 578
RsaNI	GTAC	2 cut(s)	319, 577
SatI	GCNGC	4 cut(s)	252, 437, 440, 486
Sau96I	GGNCC	3 cut(s)	104, 297, 362
SchI	GAGTC	1 cut(s)	25
ScrFI	CCNGG	2 cut(s)	32, 102
SfcI	CTRYAG	1 cut(s)	486
SfoI	GGCGCC	1 cut(s)	374
SinI	GGWCC	1 cut(s)	362
Sse9I	AATT	2 cut(s)	173, 283
SsiI	CCGC	1 cut(s)	252
SspDI	GGCGCC	1 cut(s)	372
SspMI	CTAG	2 cut(s)	143, 212
StyD4I	CCNGG	2 cut(s)	30, 100
TaiI	ACGT	2 cut(s)	551, 582
TaqI	TCGA	1 cut(s)	160
TaqII	GACCGA	1 cut(s)	99
TasI	AATT	2 cut(s)	173, 283
TauI	GCSGC	1 cut(s)	254
TscAI	CASTG	1 cut(s)	120
TseFI	GTSAC	2 cut(s)	54, 111
TseI	GCWGC	3 cut(s)	436, 439, 485
Tsp45I	GTSAC	2 cut(s)	54, 111
TspDTI	ATGAA	2 cut(s)	125, 548
TspRI	CASTG	1 cut(s)	120
Van91I	CCANNNNNTGG	1 cut(s)	175
VpaK11BI	GGWCC	1 cut(s)	362
XceI	RCATGY	1 cut(s)	48
XspI	CTAG	2 cut(s)	143, 212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.