Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000282

Physical Location & Seq

Genomic Coordinates Forward (+)

43569403 .. 43569759

Gene Structure 357 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38811

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGAGTCCTTCAACAATGGCCATCCTTATAGTCTTCCTCGTGTTCATCTGGTATCTCTTCACTACAGCCTCAAAACCAAAGCACAAATCAAAGCTACCTCCTGGCCCTTCATCACTACCAATCATTGGTAATCTTCATATGCTAGGCAGCCTCCCACACCGTAGCCTTCAACATTTGGCCAAAAGATATGGACCAATAATGTCTATTCATCTTGGCAATGTACCTGTGATAGTAGTCTCATCTCCGAAAGCTGCAGAGTTGTTCCTCAAAACCCATGACCACAATTTTGCCAACCGGCCCAAAACCAAGGTCAGTCAGTGCATGACTAACGGTGCAAAGGACCTGGCCTTTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

118

Amino Acids

12.98

Weight (kDa)

10.3

Isoelectric Point (pI)

51.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	33 - 107	1.3e-14	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000282)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12350 FvH4_5g12380 FvH4_5g12392 FvH4_5g12400 FvH4_5g12430
malus_domestica	MD06G1213300.v1.1 MD06G1213500.v1.1 MD06G1213700.v1.1 MD06G1213800.v1.1 MD06G1213900.v1.1 MD06G1214000.v1.1 MD06G1214400.v1.1 MD14G1224300.v1.1 MD14G1224400.v1.1 MD14G1224600.v1.1 MD14G1224700.v1.1 MD14G1224800.v1.1 MD14G1224900.v1.1 MD14G1225100.v1.1 MD14G1225400.v1.1
prunus_persica	Prupe.5G219700_v2.0.a1 Prupe.5G219800_v2.0.a1 Prupe.5G219900_v2.0.a1 Prupe.8G078500_v2.0.a1
pyrus_communis	pycom06g19100 pycom14g18590 pycom14g18600 pycom14g18610 pycom14g18660
rosa_chinensis	RchiOBHm_Chr0c12g0499591 RchiOBHm_Chr2g0140591 RchiOBHm_Chr2g0140631 RchiOBHm_Chr2g0140641 RchiOBHm_Chr2g0140651 RchiOBHm_Chr4g0417991 RchiOBHm_Chr4g0418001 RchiOBHm_Chr4g0418101 RchiOBHm_Chr4g0418111 RchiOBHm_Chr4g0418121 RchiOBHm_Chr6g0280191 RchiOBHm_Chr6g0280241 RchiOBHm_Chr6g0280251 RchiOBHm_Chr7g0185031 RchiOBHm_Chr7g0185051 RchiOBHm_Chr7g0185081 RchiOBHm_Chr7g0185091 RchiOBHm_Chr7g0185111 RchiOBHm_Chr7g0185131 RchiOBHm_Chr7g0185151 RchiOBHm_Chr7g0185161 RchiOBHm_Chr7g0185191 RchiOBHm_Chr7g0222431
rosa_laevigata	RLG00000002061 RLG00000004934 RLG00000004935 RLG00000004937 RLG00000013071 RLG00000013077 RLG00000019621 RLG00000019881 RLG00000019884 RLG00000019887 RLG00000019888 RLG00000028839
rosa_multiflora	Rmu_co8014370.1_g000001 Rmu_co8334683.1_g000001 Rmu_co8440383.1_g000001 Rmu_sc0002826.1_g000008 Rmu_sc0002826.1_g000009 Rmu_sc0002826.1_g000030 Rmu_sc0004483.1_g000005 Rmu_sc0004638.1_g000003 Rmu_sc0004638.1_g000004 Rmu_sc0005756.1_g000003 Rmu_sc0006493.1_g000023 Rmu_sc0006493.1_g000024 Rmu_sc0007137.1_g000017 Rmu_sc0008496.1_g000022 Rmu_sc0008769.1_g000003 Rmu_sc0013612.1_g000026 Rmu_sc0013864.1_g000001 Rmu_sc0013864.1_g000007 Rmu_sc0013864.1_g000008 Rmu_sc0030128.1_g000001 Rmu_sc0041660.1_g000001 Rmu_ssc0000289.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104640 Rroxscaffold_3G00253970 Rroxscaffold_3G00269170 Rroxscaffold_3G00269200 Rroxscaffold_3G00269210 Rroxscaffold_3G00269220 Rroxscaffold_3G00269230 Rroxscaffold_7G00188320
rosa_rugosa	Rorug01G0052300 Rorug05G0212000 Rorug06G0130700 Rorug06G0131100 Rorug06G0466200 Rorug06G0466300 Rorug06G0466400 Rorug06G0466500 Rorug06G0466700 Rorug07G0208500 Rorug07G0294600
rosa_samantha	Rh4AG137600 Rh6DG237300 Rh6DG237800 Rh7AG076200 Rh7AG076300 Rh7AG076500 Rh7AG076600 Rh7AG350700 Rh7BG070800 Rh7BG070900 Rh7BG071000 Rh7BG071100
rosa_wichuraiana	Rw6G020990 Rw6G021010 Rw7G005900 Rw7G005910 Rw7G005920 Rw7G005940 Rw7G005950 Rw7G005970 Rw7G029600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	125
AcoI	YGGCCR	2 cut(s)	18, 177
AfaI	GTAC	1 cut(s)	222
AfiI	CCNNNNNNNGG	1 cut(s)	125
AgsI	TTSAA	2 cut(s)	12, 170
AjnI	CCWGG	2 cut(s)	100, 342
AluBI	AGCT	2 cut(s)	94, 251
AluI	AGCT	2 cut(s)	94, 251
Alw26I	GTCTC	1 cut(s)	241
AoxI	GGCC	5 cut(s)	18, 103, 177, 296, 345
ApeKI	GCWGC	2 cut(s)	147, 251
ArsI	GACNNNNNNTTYG	5 cut(s)	269, 294, 301, 326, 332
AspS9I	GGNCC	4 cut(s)	104, 191, 297, 340
AvaII	GGWCC	2 cut(s)	191, 340
BalI	TGGCCA	2 cut(s)	20, 179
BauI	CACGAG	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	25
BbvI	GCAGC	2 cut(s)	159, 238
BccI	CCATC	1 cut(s)	29
BciT130I	CCWGG	2 cut(s)	102, 344
BcoDI	GTCTC	1 cut(s)	241
BfaI	CTAG	1 cut(s)	143
BfmI	CTRYAG	2 cut(s)	63, 252
BisI	GCNGC	2 cut(s)	148, 252
BlsI	GCNGC	2 cut(s)	149, 253
Bme1390I	CCNGG	2 cut(s)	102, 344
Bme18I	GGWCC	2 cut(s)	191, 340
BmgT120I	GGNCC	4 cut(s)	104, 191, 297, 340
BmrFI	CCNGG	2 cut(s)	102, 344
BpiI	GAAGAC	1 cut(s)	25
BsaJI	CCNNGG	1 cut(s)	306
Bsc4I	CCNNNNNNNGG	1 cut(s)	125
Bse118I	RCCGGY	1 cut(s)	294
Bse3DI	GCAATG	1 cut(s)	223
BseBI	CCWGG	2 cut(s)	102, 344
BseDI	CCNNGG	1 cut(s)	306
BseGI	GGATG	1 cut(s)	21
BseLI	CCNNNNNNNGG	1 cut(s)	125
BseMI	GCAATG	1 cut(s)	223
BseXI	GCAGC	2 cut(s)	159, 238
BshFI	GGCC	5 cut(s)	20, 105, 179, 298, 347
BsiSI	CCGG	1 cut(s)	295
BslI	CCNNNNNNNGG	1 cut(s)	125
BsmAI	GTCTC	1 cut(s)	241
BsnI	GGCC	5 cut(s)	20, 105, 179, 298, 347
BspANI	GGCC	5 cut(s)	20, 105, 179, 298, 347
BspMAI	CTGCAG	1 cut(s)	256
BsrDI	GCAATG	1 cut(s)	223
BsrFI	RCCGGY	1 cut(s)	294
BssAI	RCCGGY	1 cut(s)	294
BssECI	CCNNGG	1 cut(s)	306
BssSI	CACGAG	1 cut(s)	38
BssT1I	CCWWGG	1 cut(s)	306
Bst2BI	CACGAG	1 cut(s)	38
Bst2UI	CCWGG	2 cut(s)	102, 344
Bst4CI	ACNGT	2 cut(s)	161, 332
Bst6I	CTCTTC	1 cut(s)	62
BstF5I	GGATG	1 cut(s)	21
BstMAI	GTCTC	1 cut(s)	241
BstNI	CCWGG	2 cut(s)	102, 344
BstSCI	CCNGG	2 cut(s)	100, 342
BstSFI	CTRYAG	2 cut(s)	63, 252
BstV1I	GCAGC	2 cut(s)	159, 238
BstV2I	GAAGAC	1 cut(s)	25
BsuRI	GGCC	5 cut(s)	20, 105, 179, 298, 347
BtsCI	GGATG	1 cut(s)	21
BtsIMutI	CAGTG	1 cut(s)	323
Cfr10I	RCCGGY	1 cut(s)	294
Cfr13I	GGNCC	4 cut(s)	104, 191, 297, 340
Csp6I	GTAC	1 cut(s)	221
CviAII	CATG	2 cut(s)	275, 322
CviQI	GTAC	1 cut(s)	221
EaeI	YGGCCR	2 cut(s)	18, 177
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
Eco130I	CCWWGG	1 cut(s)	306
Eco47I	GGWCC	2 cut(s)	191, 340
EcoO109I	RGGNCCY	1 cut(s)	340
EcoRII	CCWGG	2 cut(s)	100, 342
EcoT14I	CCWWGG	1 cut(s)	306
ErhI	CCWWGG	1 cut(s)	306
FaeI	CATG	2 cut(s)	278, 325
FaiI	YATR	6 cut(s)	29, 138, 140, 189, 276, 323
FatI	CATG	2 cut(s)	274, 321
FauNDI	CATATG	1 cut(s)	138
Fnu4HI	GCNGC	2 cut(s)	148, 252
FokI	GGATG	1 cut(s)	8
Fsp4HI	GCNGC	2 cut(s)	148, 252
FspBI	CTAG	1 cut(s)	143
GluI	GCNGC	2 cut(s)	148, 252
HaeIII	GGCC	5 cut(s)	20, 105, 179, 298, 347
HapII	CCGG	1 cut(s)	295
Hin1II	CATG	2 cut(s)	278, 325
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	1 cut(s)	295
Hpy188I	TCNGA	1 cut(s)	246
HpyAV	CCTTC	3 cut(s)	18, 117, 176
HpyCH4III	ACNGT	2 cut(s)	161, 332
HpyCH4V	TGCA	3 cut(s)	254, 321, 335
Hsp92II	CATG	2 cut(s)	278, 325
LpnPI	CCDG	6 cut(s)	34, 87, 114, 237, 308, 329
Lsp1109I	GCAGC	2 cut(s)	159, 238
MaeI	CTAG	1 cut(s)	143
MboII	GAAGA	3 cut(s)	25, 49, 125
MlsI	TGGCCA	2 cut(s)	20, 179
MluCI	AATT	1 cut(s)	283
MluNI	TGGCCA	2 cut(s)	20, 179
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	5 cut(s)	47, 79, 108, 161, 275
Mox20I	TGGCCA	2 cut(s)	20, 179
MscI	TGGCCA	2 cut(s)	20, 179
Msp20I	TGGCCA	2 cut(s)	20, 179
MspI	CCGG	1 cut(s)	295
MspR9I	CCNGG	2 cut(s)	102, 344
MvaI	CCWGG	2 cut(s)	102, 344
NdeI	CATATG	1 cut(s)	138
NlaIII	CATG	2 cut(s)	278, 325
PflMI	CCANNNNNTGG	1 cut(s)	125
PkrI	GCNGC	2 cut(s)	149, 253
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
PpuMI	RGGWCCY	1 cut(s)	340
Psp5II	RGGWCCY	1 cut(s)	340
Psp6I	CCWGG	2 cut(s)	100, 342
PspGI	CCWGG	2 cut(s)	100, 342
PspPI	GGNCC	4 cut(s)	104, 191, 297, 340
PspPPI	RGGWCCY	1 cut(s)	340
PstI	CTGCAG	1 cut(s)	256
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
SatI	GCNGC	2 cut(s)	148, 252
Sau96I	GGNCC	4 cut(s)	104, 191, 297, 340
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	2 cut(s)	102, 344
SetI	ASST	6 cut(s)	96, 100, 226, 253, 312, 345
SfcI	CTRYAG	2 cut(s)	63, 252
SinI	GGWCC	2 cut(s)	191, 340
Sse9I	AATT	1 cut(s)	283
SspMI	CTAG	1 cut(s)	143
StyD4I	CCNGG	2 cut(s)	100, 342
StyI	CCWWGG	1 cut(s)	306
TaaI	ACNGT	2 cut(s)	161, 332
TasI	AATT	1 cut(s)	283
TscAI	CASTG	1 cut(s)	323
TseI	GCWGC	2 cut(s)	147, 251
TspDTI	ATGAA	4 cut(s)	34, 99, 125, 197
TspRI	CASTG	1 cut(s)	323
Van91I	CCANNNNNTGG	1 cut(s)	125
VpaK11BI	GGWCC	2 cut(s)	191, 340
XspI	CTAG	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.