Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000282

Physical Location & Seq

Genomic Coordinates Forward (+)

43569887 .. 43570567

Gene Structure 681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38812

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGAGAGGAAGGCCAAGTGGTGGATATTAGTGATAAAAATTGGTGTGCTTATTGAGGATATAATGTATAGGATGATAGTGGGTCGCAAAAAGAATGATTGGTTTGATATGAACGAGATTATTAAGGAGGCTATATCATTGTTCAGAGCATTCAACATAGCTGATTATGTGCCATTCCTCAGTCCATTTGATTTTCAGAGCTTAAAGAAAGATAGCAAAAGAATCGATCAACTCTTGGAGAAGATAATTGAGGAGCATGAAGCTAACACTAGGAGGGGGAAACATGGCCAGTATGAGGACTTTGTAGACGTGTTGCTTTCGTTCACAAACCAACGGTTAAACATGAATGATGAGAGATTATTTCCTCTTGACCGAACAAATGTGAAAGCCATCTTATTTGACATGTTGATGGCATCTTTTGATACATCGGCCGTTGCAATTGTTTGGACAATTGGACCCTTGCCGAGCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

157

Amino Acids

18.48

Weight (kDa)

6.14

Isoelectric Point (pI)

36.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	21 - 151	2.8e-12	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000282)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12350 FvH4_5g12380 FvH4_5g12392 FvH4_5g12400 FvH4_5g12430
malus_domestica	MD06G1213300.v1.1 MD06G1213500.v1.1 MD06G1213700.v1.1 MD06G1213800.v1.1 MD06G1213900.v1.1 MD06G1214000.v1.1 MD06G1214400.v1.1 MD14G1224300.v1.1 MD14G1224400.v1.1 MD14G1224600.v1.1 MD14G1224700.v1.1 MD14G1224800.v1.1 MD14G1224900.v1.1 MD14G1225100.v1.1 MD14G1225400.v1.1
prunus_persica	Prupe.5G219700_v2.0.a1 Prupe.5G219800_v2.0.a1 Prupe.5G219900_v2.0.a1 Prupe.8G078500_v2.0.a1
pyrus_communis	pycom06g19100 pycom14g18590 pycom14g18600 pycom14g18610 pycom14g18660
rosa_chinensis	RchiOBHm_Chr0c12g0499591 RchiOBHm_Chr2g0140591 RchiOBHm_Chr2g0140631 RchiOBHm_Chr2g0140641 RchiOBHm_Chr2g0140651 RchiOBHm_Chr4g0417991 RchiOBHm_Chr4g0418001 RchiOBHm_Chr4g0418101 RchiOBHm_Chr4g0418111 RchiOBHm_Chr4g0418121 RchiOBHm_Chr6g0280191 RchiOBHm_Chr6g0280241 RchiOBHm_Chr6g0280251 RchiOBHm_Chr7g0185031 RchiOBHm_Chr7g0185051 RchiOBHm_Chr7g0185081 RchiOBHm_Chr7g0185091 RchiOBHm_Chr7g0185111 RchiOBHm_Chr7g0185131 RchiOBHm_Chr7g0185151 RchiOBHm_Chr7g0185161 RchiOBHm_Chr7g0185191 RchiOBHm_Chr7g0222431
rosa_laevigata	RLG00000002061 RLG00000004934 RLG00000004935 RLG00000004937 RLG00000013071 RLG00000013077 RLG00000019621 RLG00000019881 RLG00000019884 RLG00000019887 RLG00000019888 RLG00000028839
rosa_multiflora	Rmu_co8014370.1_g000001 Rmu_co8334683.1_g000001 Rmu_co8440383.1_g000001 Rmu_sc0002826.1_g000008 Rmu_sc0002826.1_g000009 Rmu_sc0002826.1_g000030 Rmu_sc0004483.1_g000005 Rmu_sc0004638.1_g000003 Rmu_sc0004638.1_g000004 Rmu_sc0005756.1_g000003 Rmu_sc0006493.1_g000023 Rmu_sc0006493.1_g000024 Rmu_sc0007137.1_g000017 Rmu_sc0008496.1_g000022 Rmu_sc0008769.1_g000003 Rmu_sc0013612.1_g000026 Rmu_sc0013864.1_g000001 Rmu_sc0013864.1_g000007 Rmu_sc0013864.1_g000008 Rmu_sc0030128.1_g000001 Rmu_sc0041660.1_g000001 Rmu_ssc0000289.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104640 Rroxscaffold_3G00253970 Rroxscaffold_3G00269170 Rroxscaffold_3G00269200 Rroxscaffold_3G00269210 Rroxscaffold_3G00269220 Rroxscaffold_3G00269230 Rroxscaffold_7G00188320
rosa_rugosa	Rorug01G0052300 Rorug05G0212000 Rorug06G0130700 Rorug06G0131100 Rorug06G0466200 Rorug06G0466300 Rorug06G0466400 Rorug06G0466500 Rorug06G0466700 Rorug07G0208500 Rorug07G0294600
rosa_samantha	Rh4AG137600 Rh6DG237300 Rh6DG237800 Rh7AG076200 Rh7AG076300 Rh7AG076500 Rh7AG076600 Rh7AG350700 Rh7BG070800 Rh7BG070900 Rh7BG071000 Rh7BG071100
rosa_wichuraiana	Rw6G020990 Rw6G021010 Rw7G005900 Rw7G005910 Rw7G005920 Rw7G005940 Rw7G005950 Rw7G005970 Rw7G029600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	21
AccI	GTMKAC	1 cut(s)	306
AcoI	YGGCCR	2 cut(s)	286, 429
AfiI	CCNNNNNNNGG	2 cut(s)	21, 295
AflIII	ACRYGT	2 cut(s)	309, 402
AgsI	TTSAA	1 cut(s)	154
AjiI	CACGTC	1 cut(s)	310
AluBI	AGCT	4 cut(s)	161, 201, 263, 468
AluI	AGCT	4 cut(s)	161, 201, 263, 468
Alw21I	GWGCWC	1 cut(s)	470
AoxI	GGCC	3 cut(s)	12, 286, 429
AspS9I	GGNCC	1 cut(s)	455
AvaII	GGWCC	1 cut(s)	455
BalI	TGGCCA	1 cut(s)	288
BanII	GRGCYC	1 cut(s)	470
Bbv12I	GWGCWC	1 cut(s)	470
BccI	CCATC	2 cut(s)	398, 403
BceAI	ACGGC	1 cut(s)	416
BcgI	CGANNNNNNTGC	2 cut(s)	205, 239
BfaI	CTAG	1 cut(s)	270
Bme18I	GGWCC	1 cut(s)	455
BmgBI	CACGTC	1 cut(s)	310
BmgT120I	GGNCC	1 cut(s)	455
BmiI	GGNNCC	1 cut(s)	457
BmsI	GCATC	1 cut(s)	422
Bsa29I	ATCGAT	1 cut(s)	225
Bsc4I	CCNNNNNNNGG	2 cut(s)	21, 295
Bse1I	ACTGG	1 cut(s)	289
BseCI	ATCGAT	1 cut(s)	225
BseGI	GGATG	1 cut(s)	78
BseLI	CCNNNNNNNGG	2 cut(s)	21, 295
BseMII	CTCAG	1 cut(s)	193
BseNI	ACTGG	1 cut(s)	289
BseRI	GAGGAG	1 cut(s)	266
BseX3I	CGGCCG	1 cut(s)	429
Bsh1285I	CGRYCG	1 cut(s)	432
BshFI	GGCC	3 cut(s)	14, 288, 431
BshVI	ATCGAT	1 cut(s)	225
BsiEI	CGRYCG	1 cut(s)	432
BsiHKAI	GWGCWC	1 cut(s)	470
BslI	CCNNNNNNNGG	2 cut(s)	21, 295
BsmI	GAATGC	1 cut(s)	149
BsnI	GGCC	3 cut(s)	14, 288, 431
Bsp1286I	GDGCHC	1 cut(s)	470
Bsp143I	GATC	1 cut(s)	226
BspANI	GGCC	3 cut(s)	14, 288, 431
BspCNI	CTCAG	1 cut(s)	192
BspDI	ATCGAT	1 cut(s)	225
BspLI	GGNNCC	1 cut(s)	457
BsrI	ACTGG	1 cut(s)	289
BssMI	GATC	1 cut(s)	226
Bst4CI	ACNGT	1 cut(s)	336
BstDEI	CTNAG	1 cut(s)	179
BstF5I	GGATG	1 cut(s)	78
BstKTI	GATC	1 cut(s)	229
BstMBI	GATC	1 cut(s)	226
BstMCI	CGRYCG	1 cut(s)	432
BstNSI	RCATGY	1 cut(s)	406
BstZI	CGGCCG	1 cut(s)	429
Bsu15I	ATCGAT	1 cut(s)	225
BsuRI	GGCC	3 cut(s)	14, 288, 431
BsuTUI	ATCGAT	1 cut(s)	225
BtrI	CACGTC	1 cut(s)	310
BtsCI	GGATG	1 cut(s)	78
Cfr13I	GGNCC	1 cut(s)	455
ClaI	ATCGAT	1 cut(s)	225
CviAII	CATG	4 cut(s)	257, 284, 343, 403
CviJI	RGCY	9 cut(s)	14, 131, 161, 201, 263, 288, 389, 431, 468
CviKI_1	RGCY	9 cut(s)	14, 131, 161, 201, 263, 288, 389, 431, 468
DdeI	CTNAG	1 cut(s)	179
DpnI	GATC	1 cut(s)	228
DpnII	GATC	1 cut(s)	226
EaeI	YGGCCR	2 cut(s)	286, 429
EagI	CGGCCG	1 cut(s)	429
Ecl136II	GAGCTC	1 cut(s)	468
EclXI	CGGCCG	1 cut(s)	429
Eco24I	GRGCYC	1 cut(s)	470
Eco47I	GGWCC	1 cut(s)	455
Eco52I	CGGCCG	1 cut(s)	429
Eco53kI	GAGCTC	1 cut(s)	468
EcoICRI	GAGCTC	1 cut(s)	468
EcoT38I	GRGCYC	1 cut(s)	470
FaeI	CATG	4 cut(s)	260, 287, 346, 406
FatI	CATG	4 cut(s)	256, 283, 342, 402
FblI	GTMKAC	1 cut(s)	306
FokI	GGATG	1 cut(s)	85
FriOI	GRGCYC	1 cut(s)	470
FspBI	CTAG	1 cut(s)	270
HaeIII	GGCC	3 cut(s)	14, 288, 431
Hin1II	CATG	4 cut(s)	260, 287, 346, 406
HinfI	GANTC	1 cut(s)	222
Hpy166II	GTNNAC	2 cut(s)	307, 324
Hpy188I	TCNGA	2 cut(s)	146, 198
Hpy188III	TCNNGA	2 cut(s)	368, 471
Hpy8I	GTNNAC	2 cut(s)	307, 324
HpyAV	CCTTC	1 cut(s)	4
HpyCH4III	ACNGT	1 cut(s)	336
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	1 cut(s)	437
HpyF3I	CTNAG	1 cut(s)	179
HpySE526I	ACGT	1 cut(s)	309
Hsp92II	CATG	4 cut(s)	260, 287, 346, 406
Kzo9I	GATC	1 cut(s)	226
LmnI	GCTCC	1 cut(s)	253
LpnPI	CCDG	1 cut(s)	302
LweI	GCATC	1 cut(s)	422
MaeI	CTAG	1 cut(s)	270
MaeII	ACGT	1 cut(s)	309
MalI	GATC	1 cut(s)	228
MboI	GATC	1 cut(s)	226
MboII	GAAGA	1 cut(s)	253
MfeI	CAATTG	2 cut(s)	438, 450
MhlI	GDGCHC	1 cut(s)	470
MlsI	TGGCCA	1 cut(s)	288
MluCI	AATT	4 cut(s)	39, 246, 438, 450
MluNI	TGGCCA	1 cut(s)	288
MnlI	CCTC	7 cut(s)	49, 121, 188, 244, 267, 289, 375
Mox20I	TGGCCA	1 cut(s)	288
MscI	TGGCCA	1 cut(s)	288
MseI	TTAA	3 cut(s)	123, 203, 338
MslI	CAYNNNNRTG	1 cut(s)	407
Msp20I	TGGCCA	1 cut(s)	288
MunI	CAATTG	2 cut(s)	438, 450
Mva1269I	GAATGC	1 cut(s)	149
NdeII	GATC	1 cut(s)	226
NlaIII	CATG	4 cut(s)	260, 287, 346, 406
NlaIV	GGNNCC	1 cut(s)	457
NspI	RCATGY	1 cut(s)	406
PciI	ACATGT	1 cut(s)	402
PctI	GAATGC	1 cut(s)	149
PfeI	GAWTC	1 cut(s)	222
PflMI	CCANNNNNTGG	1 cut(s)	21
PscI	ACATGT	1 cut(s)	402
Psp124BI	GAGCTC	1 cut(s)	470
PspN4I	GGNNCC	1 cut(s)	457
PspPI	GGNCC	1 cut(s)	455
RseI	CAYNNNNRTG	1 cut(s)	407
SacI	GAGCTC	1 cut(s)	470
SaqAI	TTAA	3 cut(s)	123, 203, 338
Sau3AI	GATC	1 cut(s)	226
Sau96I	GGNCC	1 cut(s)	455
SduI	GDGCHC	1 cut(s)	470
SetI	ASST	5 cut(s)	163, 203, 265, 312, 470
SfaNI	GCATC	1 cut(s)	422
SinI	GGWCC	1 cut(s)	455
SmiMI	CAYNNNNRTG	1 cut(s)	407
Sse9I	AATT	4 cut(s)	39, 246, 438, 450
SspMI	CTAG	1 cut(s)	270
SstI	GAGCTC	1 cut(s)	470
TaaI	ACNGT	1 cut(s)	336
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	1 cut(s)	225
TaqII	GACCGA	1 cut(s)	387
TasI	AATT	4 cut(s)	39, 246, 438, 450
TfiI	GAWTC	1 cut(s)	222
Tru1I	TTAA	3 cut(s)	123, 203, 338
Tru9I	TTAA	3 cut(s)	123, 203, 338
TspDTI	ATGAA	3 cut(s)	125, 273, 359
Van91I	CCANNNNNTGG	1 cut(s)	21
VpaK11BI	GGWCC	1 cut(s)	455
XceI	RCATGY	1 cut(s)	406
XmiI	GTMKAC	1 cut(s)	306
XspI	CTAG	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.