Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000282

Physical Location & Seq

Genomic Coordinates Forward (+)

59083092 .. 59084438

Gene Structure 1347 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0466400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGAAAAGGAAACCACTATATTGAAGGCTGAAGAGCTCAATAAGAAGCATCAACAAATCCCTGGCAGCAGACAAGTTCTTGAACTTTTGAAAGCTACTTCAGACCCATCTGCCAACGTTCTCGACATCGTGCTTTACTTTTCAAGGCGTAACGGAGAGATTAGGGGTATTTCAGCAGAGATAAAATCGCACCACCAGCGGGAAGAGGAGGACAAAGTACTAGATGAAGAAATTGAAGAGGATGAGATGTTCTGGAATCAAGAAGCTCTTAAAGAGGAGGAAGAAGATGATAACTATGAAGTGGAGCTGAAGTTGCTGATGTGTTCTCAAATTGTTTACTTTAATTTCAAGTTTTCTAGCATTTTAGAGGAAATGTTCACCAACTGGTGTTTAAGAAATGATGCTGATTTTGGGGTTTTACTAATTTTGAATCAATTTGGCACCTTACAAATGTTCCTAAGCTGGATTGAGCAATGCTGTGATTTGGTGTTGAAGCATCTTTCAGTCATGCAGAAACAAAGATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

175

Amino Acids

20.68

Weight (kDa)

4.63

Isoelectric Point (pI)

49.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000282)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12350 FvH4_5g12380 FvH4_5g12392 FvH4_5g12400 FvH4_5g12430
malus_domestica	MD06G1213300.v1.1 MD06G1213500.v1.1 MD06G1213700.v1.1 MD06G1213800.v1.1 MD06G1213900.v1.1 MD06G1214000.v1.1 MD06G1214400.v1.1 MD14G1224300.v1.1 MD14G1224400.v1.1 MD14G1224600.v1.1 MD14G1224700.v1.1 MD14G1224800.v1.1 MD14G1224900.v1.1 MD14G1225100.v1.1 MD14G1225400.v1.1
prunus_persica	Prupe.5G219700_v2.0.a1 Prupe.5G219800_v2.0.a1 Prupe.5G219900_v2.0.a1 Prupe.8G078500_v2.0.a1
pyrus_communis	pycom06g19100 pycom14g18590 pycom14g18600 pycom14g18610 pycom14g18660
rosa_chinensis	RchiOBHm_Chr0c12g0499591 RchiOBHm_Chr2g0140591 RchiOBHm_Chr2g0140631 RchiOBHm_Chr2g0140641 RchiOBHm_Chr2g0140651 RchiOBHm_Chr4g0417991 RchiOBHm_Chr4g0418001 RchiOBHm_Chr4g0418101 RchiOBHm_Chr4g0418111 RchiOBHm_Chr4g0418121 RchiOBHm_Chr6g0280191 RchiOBHm_Chr6g0280241 RchiOBHm_Chr6g0280251 RchiOBHm_Chr7g0185031 RchiOBHm_Chr7g0185051 RchiOBHm_Chr7g0185081 RchiOBHm_Chr7g0185091 RchiOBHm_Chr7g0185111 RchiOBHm_Chr7g0185131 RchiOBHm_Chr7g0185151 RchiOBHm_Chr7g0185161 RchiOBHm_Chr7g0185191 RchiOBHm_Chr7g0222431
rosa_laevigata	RLG00000002061 RLG00000004934 RLG00000004935 RLG00000004937 RLG00000013071 RLG00000013077 RLG00000019621 RLG00000019881 RLG00000019884 RLG00000019887 RLG00000019888 RLG00000028839
rosa_multiflora	Rmu_co8014370.1_g000001 Rmu_co8334683.1_g000001 Rmu_co8440383.1_g000001 Rmu_sc0002826.1_g000008 Rmu_sc0002826.1_g000009 Rmu_sc0002826.1_g000030 Rmu_sc0004483.1_g000005 Rmu_sc0004638.1_g000003 Rmu_sc0004638.1_g000004 Rmu_sc0005756.1_g000003 Rmu_sc0006493.1_g000023 Rmu_sc0006493.1_g000024 Rmu_sc0007137.1_g000017 Rmu_sc0008496.1_g000022 Rmu_sc0008769.1_g000003 Rmu_sc0013612.1_g000026 Rmu_sc0013864.1_g000001 Rmu_sc0013864.1_g000007 Rmu_sc0013864.1_g000008 Rmu_sc0030128.1_g000001 Rmu_sc0041660.1_g000001 Rmu_ssc0000289.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104640 Rroxscaffold_3G00253970 Rroxscaffold_3G00269170 Rroxscaffold_3G00269200 Rroxscaffold_3G00269210 Rroxscaffold_3G00269220 Rroxscaffold_3G00269230 Rroxscaffold_7G00188320
rosa_rugosa	Rorug01G0052300 Rorug05G0212000 Rorug06G0130700 Rorug06G0131100 Rorug06G0466200 Rorug06G0466300 Rorug06G0466400 Rorug06G0466500 Rorug06G0466700 Rorug07G0208500 Rorug07G0294600
rosa_samantha	Rh4AG137600 Rh6DG237300 Rh6DG237800 Rh7AG076200 Rh7AG076300 Rh7AG076500 Rh7AG076600 Rh7AG350700 Rh7BG070800 Rh7BG070900 Rh7BG071000 Rh7BG071100
rosa_wichuraiana	Rw6G020990 Rw6G021010 Rw7G005900 Rw7G005910 Rw7G005920 Rw7G005940 Rw7G005950 Rw7G005970 Rw7G029600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	440
AciI	CCGC	1 cut(s)	199
AclI	AACGTT	1 cut(s)	117
AcuI	CTGAAG	3 cut(s)	51, 84, 329
AfaI	GTAC	1 cut(s)	219
AfiI	CCNNNNNNNGG	1 cut(s)	199
AgsI	TTSAA	8 cut(s)	25, 83, 91, 144, 236, 349, 430, 493
AjnI	CCWGG	1 cut(s)	61
AloI	GAACNNNNNNTCC	2 cut(s)	233, 265
AluBI	AGCT	5 cut(s)	37, 95, 266, 307, 462
AluI	AGCT	5 cut(s)	37, 95, 266, 307, 462
Alw21I	GWGCWC	1 cut(s)	39
ApeKI	GCWGC	1 cut(s)	66
AsuHPI	GGTGA	1 cut(s)	370
BanI	GGYRCC	1 cut(s)	440
BanII	GRGCYC	1 cut(s)	39
Bbv12I	GWGCWC	1 cut(s)	39
BbvI	GCAGC	1 cut(s)	78
BccI	CCATC	1 cut(s)	115
BciT130I	CCWGG	1 cut(s)	63
BfaI	CTAG	2 cut(s)	221, 357
BisI	GCNGC	1 cut(s)	67
BlsI	GCNGC	1 cut(s)	68
BmcAI	AGTACT	1 cut(s)	219
Bme1390I	CCNGG	1 cut(s)	63
BmiI	GGNNCC	1 cut(s)	442
BmrFI	CCNGG	1 cut(s)	63
BmsI	GCATC	4 cut(s)	58, 391, 505, 512
Bpu10I	CCTNAGC	1 cut(s)	458
BsaJI	CCNNGG	1 cut(s)	61
BsaXI	ACNNNNNCTCC	2 cut(s)	296, 326
Bsc4I	CCNNNNNNNGG	1 cut(s)	199
Bse1I	ACTGG	1 cut(s)	389
Bse3DI	GCAATG	1 cut(s)	479
BseBI	CCWGG	1 cut(s)	63
BseDI	CCNNGG	1 cut(s)	61
BseGI	GGATG	1 cut(s)	247
BseLI	CCNNNNNNNGG	1 cut(s)	199
BseMI	GCAATG	1 cut(s)	479
BseNI	ACTGG	1 cut(s)	389
BseRI	GAGGAG	2 cut(s)	221, 290
BseXI	GCAGC	1 cut(s)	78
BshNI	GGYRCC	1 cut(s)	440
BsiHKAI	GWGCWC	1 cut(s)	39
BslI	CCNNNNNNNGG	1 cut(s)	199
Bsp1286I	GDGCHC	1 cut(s)	39
BspACI	CCGC	1 cut(s)	199
BspLI	GGNNCC	1 cut(s)	442
BspQI	GCTCTTC	1 cut(s)	27
BspT107I	GGYRCC	1 cut(s)	440
BsrDI	GCAATG	1 cut(s)	479
BsrI	ACTGG	1 cut(s)	389
BssECI	CCNNGG	1 cut(s)	61
Bst2UI	CCWGG	1 cut(s)	63
Bst6I	CTCTTC	3 cut(s)	27, 198, 231
BstDEI	CTNAG	1 cut(s)	458
BstF5I	GGATG	1 cut(s)	247
BstMWI	GCNNNNNNNGC	2 cut(s)	196, 313
BstNI	CCWGG	1 cut(s)	63
BstSCI	CCNGG	1 cut(s)	61
BstV1I	GCAGC	1 cut(s)	78
BtsCI	GGATG	1 cut(s)	247
Csp6I	GTAC	1 cut(s)	218
CviAII	CATG	1 cut(s)	508
CviJI	RGCY	6 cut(s)	29, 37, 95, 266, 307, 462
CviKI_1	RGCY	6 cut(s)	29, 37, 95, 266, 307, 462
CviQI	GTAC	1 cut(s)	218
DdeI	CTNAG	1 cut(s)	458
Eam1104I	CTCTTC	3 cut(s)	27, 198, 231
EarI	CTCTTC	3 cut(s)	27, 198, 231
Ecl136II	GAGCTC	1 cut(s)	37
Eco24I	GRGCYC	1 cut(s)	39
Eco53kI	GAGCTC	1 cut(s)	37
Eco57I	CTGAAG	3 cut(s)	51, 84, 329
EcoICRI	GAGCTC	1 cut(s)	37
EcoRII	CCWGG	1 cut(s)	61
EcoT38I	GRGCYC	1 cut(s)	39
FaeI	CATG	1 cut(s)	511
FaiI	YATR	3 cut(s)	20, 297, 509
FalI	AAGNNNNNCTT	2 cut(s)	252, 284
FatI	CATG	1 cut(s)	507
FauI	CCCGC	1 cut(s)	192
Fnu4HI	GCNGC	1 cut(s)	67
FokI	GGATG	1 cut(s)	254
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	1 cut(s)	67
FspBI	CTAG	2 cut(s)	221, 357
GluI	GCNGC	1 cut(s)	67
Hin1II	CATG	1 cut(s)	511
HinfI	GANTC	2 cut(s)	256, 430
HphI	GGTGA	1 cut(s)	370
Hpy166II	GTNNAC	2 cut(s)	337, 378
Hpy188I	TCNGA	1 cut(s)	103
Hpy188III	TCNNGA	4 cut(s)	80, 122, 253, 260
Hpy8I	GTNNAC	2 cut(s)	337, 378
HpyAV	CCTTC	1 cut(s)	19
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	1 cut(s)	511
HpyF10VI	GCNNNNNNNGC	2 cut(s)	196, 313
HpyF3I	CTNAG	1 cut(s)	458
HpySE526I	ACGT	1 cut(s)	117
Hsp92II	CATG	1 cut(s)	511
LguI	GCTCTTC	1 cut(s)	27
LmnI	GCTCC	1 cut(s)	304
LpnPI	CCDG	6 cut(s)	48, 75, 209, 238, 370, 448
Lsp1109I	GCAGC	1 cut(s)	78
LweI	GCATC	4 cut(s)	58, 391, 505, 512
MaeI	CTAG	2 cut(s)	221, 357
MaeII	ACGT	1 cut(s)	117
MaeIII	GTNAC	1 cut(s)	149
MboII	GAAGA	6 cut(s)	44, 215, 239, 248, 293, 296
MhlI	GDGCHC	1 cut(s)	39
MluCI	AATT	5 cut(s)	231, 330, 343, 423, 434
MnlI	CCTC	6 cut(s)	199, 202, 232, 268, 271, 361
MseI	TTAA	3 cut(s)	270, 342, 392
MspA1I	CMGCKG	1 cut(s)	199
MspR9I	CCNGG	1 cut(s)	63
MvaI	CCWGG	1 cut(s)	63
MwoI	GCNNNNNNNGC	2 cut(s)	196, 313
NlaIII	CATG	1 cut(s)	511
NlaIV	GGNNCC	1 cut(s)	442
PciSI	GCTCTTC	1 cut(s)	27
PfeI	GAWTC	2 cut(s)	256, 430
PkrI	GCNGC	1 cut(s)	68
Psp124BI	GAGCTC	1 cut(s)	39
Psp1406I	AACGTT	1 cut(s)	117
Psp6I	CCWGG	1 cut(s)	61
PspGI	CCWGG	1 cut(s)	61
PspN4I	GGNNCC	1 cut(s)	442
RsaI	GTAC	1 cut(s)	219
RsaNI	GTAC	1 cut(s)	218
SacI	GAGCTC	1 cut(s)	39
SapI	GCTCTTC	1 cut(s)	27
SaqAI	TTAA	3 cut(s)	270, 342, 392
SatI	GCNGC	1 cut(s)	67
ScaI	AGTACT	1 cut(s)	219
ScrFI	CCNGG	1 cut(s)	63
SduI	GDGCHC	1 cut(s)	39
SetI	ASST	7 cut(s)	39, 97, 120, 268, 309, 446, 464
SfaNI	GCATC	4 cut(s)	58, 391, 505, 512
Sse9I	AATT	5 cut(s)	231, 330, 343, 423, 434
SsiI	CCGC	1 cut(s)	199
SspMI	CTAG	2 cut(s)	221, 357
SstI	GAGCTC	1 cut(s)	39
StyD4I	CCNGG	1 cut(s)	61
TaiI	ACGT	1 cut(s)	120
TaqI	TCGA	1 cut(s)	123
TasI	AATT	5 cut(s)	231, 330, 343, 423, 434
TatI	WGTACW	1 cut(s)	217
TfiI	GAWTC	2 cut(s)	256, 430
Tru1I	TTAA	3 cut(s)	270, 342, 392
Tru9I	TTAA	3 cut(s)	270, 342, 392
TseI	GCWGC	1 cut(s)	66
TspDTI	ATGAA	2 cut(s)	240, 312
TspGWI	ACGGA	1 cut(s)	168
XspI	CTAG	2 cut(s)	221, 357
ZrmI	AGTACT	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.