RchiOBHm_Chr2g0140651

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
58150290 .. 58150724
435 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51106

Sequence Viewer

Length: 435 bp
ATGAGTCCTTTAACAATAATGGCCATCCTCCTGGTTCTCCTCACATACCTTTGGTCACTCATCTCTGCCTCCTCAAAATCAAACCACAGAAAACTACCACCCAGCCCTCGGTCACTGCCAATAATTGGAAACCTCCATATGCTATGCAAACTCCCCCATCGAAGCCTCCAACAATTGGCCAAAAAATATGGACACATCATGTTCATTCGTCTAGGCAATGTTCCTACCATAGTAGTCTCCTCCCCAAAAGCCACAAAGCTATTCCTCAAAACTCATGACAATAATTTTGTCAGCCGACCAAAATCCCAATCCTCGGAGTACCTGTCTTACGGCACAAAGGGAATGATATTTTCCCAATACGGTCCTTATTGGAGCCATATGAGGAAGCTTAGCATGCTTCATTTCCTCTGTCAAGAAAAAATGGAGGCTTTCTAG

Protein Analysis

144

Amino Acids

16.48

Weight (kDa)

10.2

Isoelectric Point (pI)

51.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 33 - 140 1.1e-18 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000282)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g12350 FvH4_5g12380 FvH4_5g12392 FvH4_5g12400 FvH4_5g12430
malus_domestica MD06G1213300.v1.1 MD06G1213500.v1.1 MD06G1213700.v1.1 MD06G1213800.v1.1 MD06G1213900.v1.1 MD06G1214000.v1.1 MD06G1214400.v1.1 MD14G1224300.v1.1 MD14G1224400.v1.1 MD14G1224600.v1.1 MD14G1224700.v1.1 MD14G1224800.v1.1 MD14G1224900.v1.1 MD14G1225100.v1.1 MD14G1225400.v1.1
prunus_persica Prupe.5G219700_v2.0.a1 Prupe.5G219800_v2.0.a1 Prupe.5G219900_v2.0.a1 Prupe.8G078500_v2.0.a1
pyrus_communis pycom06g19100 pycom14g18590 pycom14g18600 pycom14g18610 pycom14g18660
rosa_chinensis RchiOBHm_Chr0c12g0499591 RchiOBHm_Chr2g0140591 RchiOBHm_Chr2g0140631 RchiOBHm_Chr2g0140641 RchiOBHm_Chr2g0140651 RchiOBHm_Chr4g0417991 RchiOBHm_Chr4g0418001 RchiOBHm_Chr4g0418101 RchiOBHm_Chr4g0418111 RchiOBHm_Chr4g0418121 RchiOBHm_Chr6g0280191 RchiOBHm_Chr6g0280241 RchiOBHm_Chr6g0280251 RchiOBHm_Chr7g0185031 RchiOBHm_Chr7g0185051 RchiOBHm_Chr7g0185081 RchiOBHm_Chr7g0185091 RchiOBHm_Chr7g0185111 RchiOBHm_Chr7g0185131 RchiOBHm_Chr7g0185151 RchiOBHm_Chr7g0185161 RchiOBHm_Chr7g0185191 RchiOBHm_Chr7g0222431
rosa_laevigata RLG00000002061 RLG00000004934 RLG00000004935 RLG00000004937 RLG00000013071 RLG00000013077 RLG00000019621 RLG00000019881 RLG00000019884 RLG00000019887 RLG00000019888 RLG00000028839
rosa_multiflora Rmu_co8014370.1_g000001 Rmu_co8334683.1_g000001 Rmu_co8440383.1_g000001 Rmu_sc0002826.1_g000008 Rmu_sc0002826.1_g000009 Rmu_sc0002826.1_g000030 Rmu_sc0004483.1_g000005 Rmu_sc0004638.1_g000003 Rmu_sc0004638.1_g000004 Rmu_sc0005756.1_g000003 Rmu_sc0006493.1_g000023 Rmu_sc0006493.1_g000024 Rmu_sc0007137.1_g000017 Rmu_sc0008496.1_g000022 Rmu_sc0008769.1_g000003 Rmu_sc0013612.1_g000026 Rmu_sc0013864.1_g000001 Rmu_sc0013864.1_g000007 Rmu_sc0013864.1_g000008 Rmu_sc0030128.1_g000001 Rmu_sc0041660.1_g000001 Rmu_ssc0000289.1_g000001
rosa_roxburghii Rroxscaffold_2G00104640 Rroxscaffold_3G00253970 Rroxscaffold_3G00269170 Rroxscaffold_3G00269200 Rroxscaffold_3G00269210 Rroxscaffold_3G00269220 Rroxscaffold_3G00269230 Rroxscaffold_7G00188320
rosa_rugosa Rorug01G0052300 Rorug05G0212000 Rorug06G0130700 Rorug06G0131100 Rorug06G0466200 Rorug06G0466300 Rorug06G0466400 Rorug06G0466500 Rorug06G0466700 Rorug07G0208500 Rorug07G0294600
rosa_samantha Rh4AG137600 Rh6DG237300 Rh6DG237800 Rh7AG076200 Rh7AG076300 Rh7AG076500 Rh7AG076600 Rh7AG350700 Rh7BG070800 Rh7BG070900 Rh7BG071000 Rh7BG071100
rosa_wichuraiana Rw6G020990 Rw6G021010 Rw7G005900 Rw7G005910 Rw7G005920 Rw7G005940 Rw7G005950 Rw7G005970 Rw7G029600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 125, 175
AcoI YGGCCR 2 cut(s) 21, 177
AfaI GTAC 1 cut(s) 320
AfiI CCNNNNNNNGG 4 cut(s) 108, 125, 175, 313
AjnI CCWGG 1 cut(s) 30
AluBI AGCT 2 cut(s) 259, 388
AluI AGCT 2 cut(s) 259, 388
Alw26I GTCTC 1 cut(s) 241
AoxI GGCC 2 cut(s) 21, 177
ArsI GACNNNNNNTTYG 2 cut(s) 269, 301
AspS9I GGNCC 1 cut(s) 362
AvaII GGWCC 1 cut(s) 362
BalI TGGCCA 2 cut(s) 23, 179
BccI CCATC 2 cut(s) 32, 165
BceAI ACGGC 1 cut(s) 346
BciT130I CCWGG 1 cut(s) 32
BcoDI GTCTC 1 cut(s) 241
BfaI CTAG 2 cut(s) 212, 433
BlpI GCTNAGC 1 cut(s) 389
Bme1390I CCNGG 1 cut(s) 32
Bme18I GGWCC 1 cut(s) 362
BmgT120I GGNCC 1 cut(s) 362
BmiI GGNNCC 1 cut(s) 374
BmrFI CCNGG 1 cut(s) 32
Bpu1102I GCTNAGC 1 cut(s) 389
BsaJI CCNNGG 2 cut(s) 107, 312
BsaXI ACNNNNNCTCC 2 cut(s) 308, 338
Bsc4I CCNNNNNNNGG 4 cut(s) 108, 125, 175, 313
Bse3DI GCAATG 1 cut(s) 223
BseBI CCWGG 1 cut(s) 32
BseDI CCNNGG 2 cut(s) 107, 312
BseGI GGATG 1 cut(s) 24
BseLI CCNNNNNNNGG 4 cut(s) 108, 125, 175, 313
BseMI GCAATG 1 cut(s) 223
BseRI GAGGAG 3 cut(s) 29, 61, 229
BseYI CCCAGC 1 cut(s) 101
BshFI GGCC 2 cut(s) 23, 179
BslI CCNNNNNNNGG 4 cut(s) 108, 125, 175, 313
BsmAI GTCTC 1 cut(s) 241
BsnI GGCC 2 cut(s) 23, 179
Bsp1720I GCTNAGC 1 cut(s) 389
BspANI GGCC 2 cut(s) 23, 179
BspHI TCATGA 1 cut(s) 274
BspLI GGNNCC 1 cut(s) 374
BsrDI GCAATG 1 cut(s) 223
BssECI CCNNGG 2 cut(s) 107, 312
Bst2UI CCWGG 1 cut(s) 32
Bst4CI ACNGT 1 cut(s) 362
BstC8I GCNNGC 1 cut(s) 395
BstDEI CTNAG 1 cut(s) 389
BstF5I GGATG 1 cut(s) 24
BstMAI GTCTC 1 cut(s) 241
BstMWI GCNNNNNNNGC 1 cut(s) 394
BstNI CCWGG 1 cut(s) 32
BstNSI RCATGY 1 cut(s) 397
BstSCI CCNGG 1 cut(s) 30
BstXI CCANNNNNNTGG 1 cut(s) 31
BsuRI GGCC 2 cut(s) 23, 179
BtsCI GGATG 1 cut(s) 24
BtsI GCAGTG 1 cut(s) 113
BtsIMutI CAGTG 1 cut(s) 113
Cac8I GCNNGC 1 cut(s) 395
CciI TCATGA 1 cut(s) 274
Cfr13I GGNCC 1 cut(s) 362
Csp6I GTAC 1 cut(s) 319
CviAII CATG 3 cut(s) 199, 275, 394
CviQI GTAC 1 cut(s) 319
DdeI CTNAG 1 cut(s) 389
EaeI YGGCCR 2 cut(s) 21, 177
Eco47I GGWCC 1 cut(s) 362
EcoRII CCWGG 1 cut(s) 30
FaeI CATG 3 cut(s) 202, 278, 397
FatI CATG 3 cut(s) 198, 274, 393
FauNDI CATATG 2 cut(s) 138, 378
FokI GGATG 1 cut(s) 11
FspBI CTAG 2 cut(s) 212, 433
GsaI CCCAGC 1 cut(s) 105
HaeIII GGCC 2 cut(s) 23, 179
Hin1II CATG 3 cut(s) 202, 278, 397
HindIII AAGCTT 1 cut(s) 386
HinfI GANTC 1 cut(s) 4
Hpy188I TCNGA 1 cut(s) 316
Hpy188III TCNNGA 2 cut(s) 275, 413
HpyCH4III ACNGT 1 cut(s) 362
HpyCH4V TGCA 1 cut(s) 147
HpyF10VI GCNNNNNNNGC 1 cut(s) 394
HpyF3I CTNAG 1 cut(s) 389
Hsp92II CATG 3 cut(s) 202, 278, 397
LmnI GCTCC 1 cut(s) 372
LpnPI CCDG 4 cut(s) 17, 44, 115, 335
MaeI CTAG 2 cut(s) 212, 433
MaeIII GTNAC 2 cut(s) 54, 111
MfeI CAATTG 1 cut(s) 173
MlsI TGGCCA 2 cut(s) 23, 179
MluCI AATT 3 cut(s) 123, 173, 283
MluNI TGGCCA 2 cut(s) 23, 179
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 1 cut(s) 193
Mox20I TGGCCA 2 cut(s) 23, 179
MscI TGGCCA 2 cut(s) 23, 179
MseI TTAA 1 cut(s) 11
Msp20I TGGCCA 2 cut(s) 23, 179
MspR9I CCNGG 1 cut(s) 32
MunI CAATTG 1 cut(s) 173
MvaI CCWGG 1 cut(s) 32
MwoI GCNNNNNNNGC 1 cut(s) 394
NdeI CATATG 2 cut(s) 138, 378
NlaIII CATG 3 cut(s) 202, 278, 397
NlaIV GGNNCC 1 cut(s) 374
NmuCI GTSAC 2 cut(s) 54, 111
NspI RCATGY 1 cut(s) 397
PaeI GCATGC 1 cut(s) 397
PagI TCATGA 1 cut(s) 274
PflMI CCANNNNNTGG 2 cut(s) 125, 175
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
Psp6I CCWGG 1 cut(s) 30
PspFI CCCAGC 1 cut(s) 101
PspGI CCWGG 1 cut(s) 30
PspN4I GGNNCC 1 cut(s) 374
PspPI GGNCC 1 cut(s) 362
RsaI GTAC 1 cut(s) 320
RsaNI GTAC 1 cut(s) 319
SaqAI TTAA 1 cut(s) 11
Sau96I GGNCC 1 cut(s) 362
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 1 cut(s) 32
SetI ASST 5 cut(s) 51, 135, 261, 324, 390
SinI GGWCC 1 cut(s) 362
SphI GCATGC 1 cut(s) 397
Sse9I AATT 3 cut(s) 123, 173, 283
SspMI CTAG 2 cut(s) 212, 433
StyD4I CCNGG 1 cut(s) 30
TaaI ACNGT 1 cut(s) 362
TaqI TCGA 1 cut(s) 160
TaqII GACCGA 1 cut(s) 99
TasI AATT 3 cut(s) 123, 173, 283
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TscAI CASTG 1 cut(s) 120
TseFI GTSAC 2 cut(s) 54, 111
Tsp45I GTSAC 2 cut(s) 54, 111
TspDTI ATGAA 2 cut(s) 193, 389
TspRI CASTG 1 cut(s) 120
Van91I CCANNNNNTGG 2 cut(s) 125, 175
VpaK11BI GGWCC 1 cut(s) 362
XceI RCATGY 1 cut(s) 397
XspI CTAG 2 cut(s) 212, 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.