RchiOBHm_Chr4g0417991

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
43370549 .. 43370854
306 bp
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UTR
Exon/CDS
Intron
PRQ38802

Sequence Viewer

Length: 306 bp
ATGCTAGGCAGCCTCCCACACCGTAGCCTTCAACATTTGGCCAAAAGATATGGATCAATAATGTCTATTCATCTTGGCAATGTACCTGTGATAGTAGTCTCATCTCCGAAAGTTGCAGAGTTGTTCCTCAAAACCCATGACCACAATTTTGCCAACTGGCCCAAAACTAAGGTCAGTCAGTGCATGACTTACGGTGCAAAGGACTTGGCCTTTGTCGAATATGGTCCATATTGGCGTCATGTTTGGAAGTTTTGCACAACCGAACTTATTTGTCCCTCAAAAGTTCGAGCTTTTGCACTGCTGTGA

Protein Analysis

101

Amino Acids

11.51

Weight (kDa)

9.63

Isoelectric Point (pI)

42.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 6 - 92 1.2e-11 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000282)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g12350 FvH4_5g12380 FvH4_5g12392 FvH4_5g12400 FvH4_5g12430
malus_domestica MD06G1213300.v1.1 MD06G1213500.v1.1 MD06G1213700.v1.1 MD06G1213800.v1.1 MD06G1213900.v1.1 MD06G1214000.v1.1 MD06G1214400.v1.1 MD14G1224300.v1.1 MD14G1224400.v1.1 MD14G1224600.v1.1 MD14G1224700.v1.1 MD14G1224800.v1.1 MD14G1224900.v1.1 MD14G1225100.v1.1 MD14G1225400.v1.1
prunus_persica Prupe.5G219700_v2.0.a1 Prupe.5G219800_v2.0.a1 Prupe.5G219900_v2.0.a1 Prupe.8G078500_v2.0.a1
pyrus_communis pycom06g19100 pycom14g18590 pycom14g18600 pycom14g18610 pycom14g18660
rosa_chinensis RchiOBHm_Chr0c12g0499591 RchiOBHm_Chr2g0140591 RchiOBHm_Chr2g0140631 RchiOBHm_Chr2g0140641 RchiOBHm_Chr2g0140651 RchiOBHm_Chr4g0417991 RchiOBHm_Chr4g0418001 RchiOBHm_Chr4g0418101 RchiOBHm_Chr4g0418111 RchiOBHm_Chr4g0418121 RchiOBHm_Chr6g0280191 RchiOBHm_Chr6g0280241 RchiOBHm_Chr6g0280251 RchiOBHm_Chr7g0185031 RchiOBHm_Chr7g0185051 RchiOBHm_Chr7g0185081 RchiOBHm_Chr7g0185091 RchiOBHm_Chr7g0185111 RchiOBHm_Chr7g0185131 RchiOBHm_Chr7g0185151 RchiOBHm_Chr7g0185161 RchiOBHm_Chr7g0185191 RchiOBHm_Chr7g0222431
rosa_laevigata RLG00000002061 RLG00000004934 RLG00000004935 RLG00000004937 RLG00000013071 RLG00000013077 RLG00000019621 RLG00000019881 RLG00000019884 RLG00000019887 RLG00000019888 RLG00000028839
rosa_multiflora Rmu_co8014370.1_g000001 Rmu_co8334683.1_g000001 Rmu_co8440383.1_g000001 Rmu_sc0002826.1_g000008 Rmu_sc0002826.1_g000009 Rmu_sc0002826.1_g000030 Rmu_sc0004483.1_g000005 Rmu_sc0004638.1_g000003 Rmu_sc0004638.1_g000004 Rmu_sc0005756.1_g000003 Rmu_sc0006493.1_g000023 Rmu_sc0006493.1_g000024 Rmu_sc0007137.1_g000017 Rmu_sc0008496.1_g000022 Rmu_sc0008769.1_g000003 Rmu_sc0013612.1_g000026 Rmu_sc0013864.1_g000001 Rmu_sc0013864.1_g000007 Rmu_sc0013864.1_g000008 Rmu_sc0030128.1_g000001 Rmu_sc0041660.1_g000001 Rmu_ssc0000289.1_g000001
rosa_roxburghii Rroxscaffold_2G00104640 Rroxscaffold_3G00253970 Rroxscaffold_3G00269170 Rroxscaffold_3G00269200 Rroxscaffold_3G00269210 Rroxscaffold_3G00269220 Rroxscaffold_3G00269230 Rroxscaffold_7G00188320
rosa_rugosa Rorug01G0052300 Rorug05G0212000 Rorug06G0130700 Rorug06G0131100 Rorug06G0466200 Rorug06G0466300 Rorug06G0466400 Rorug06G0466500 Rorug06G0466700 Rorug07G0208500 Rorug07G0294600
rosa_samantha Rh4AG137600 Rh6DG237300 Rh6DG237800 Rh7AG076200 Rh7AG076300 Rh7AG076500 Rh7AG076600 Rh7AG350700 Rh7BG070800 Rh7BG070900 Rh7BG071000 Rh7BG071100
rosa_wichuraiana Rw6G020990 Rw6G021010 Rw7G005900 Rw7G005910 Rw7G005920 Rw7G005940 Rw7G005950 Rw7G005970 Rw7G029600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 61
AcoI YGGCCR 1 cut(s) 39
AcyI GRCGYC 1 cut(s) 235
AfaI GTAC 1 cut(s) 84
AgsI TTSAA 1 cut(s) 32
AleI CACNNNNGTG 1 cut(s) 301
AluBI AGCT 1 cut(s) 290
AluI AGCT 1 cut(s) 290
Alw26I GTCTC 1 cut(s) 103
AlwI GGATC 1 cut(s) 61
AoxI GGCC 3 cut(s) 39, 158, 207
ApeKI GCWGC 1 cut(s) 9
ArsI GACNNNNNNTTYG 6 cut(s) 131, 156, 163, 188, 194, 226
AspS9I GGNCC 2 cut(s) 159, 224
AvaII GGWCC 1 cut(s) 224
BalI TGGCCA 1 cut(s) 41
BbvI GCAGC 1 cut(s) 21
BcoDI GTCTC 1 cut(s) 103
BfaI CTAG 1 cut(s) 5
BisI GCNGC 1 cut(s) 10
BlsI GCNGC 1 cut(s) 11
Bme18I GGWCC 1 cut(s) 224
BmgT120I GGNCC 2 cut(s) 159, 224
BsaBI GATNNNNATC 1 cut(s) 52
BsaHI GRCGYC 1 cut(s) 235
Bse1I ACTGG 1 cut(s) 161
Bse3DI GCAATG 1 cut(s) 85
Bse8I GATNNNNATC 1 cut(s) 52
BseJI GATNNNNATC 1 cut(s) 52
BseMI GCAATG 1 cut(s) 85
BseNI ACTGG 1 cut(s) 161
BseXI GCAGC 1 cut(s) 21
BshFI GGCC 3 cut(s) 41, 160, 209
BslFI GGGAC 1 cut(s) 258
BsmAI GTCTC 1 cut(s) 103
BsmFI GGGAC 1 cut(s) 258
BsnI GGCC 3 cut(s) 41, 160, 209
Bsp143I GATC 1 cut(s) 53
BspANI GGCC 3 cut(s) 41, 160, 209
BspPI GGATC 1 cut(s) 61
BsrDI GCAATG 1 cut(s) 85
BsrI ACTGG 1 cut(s) 161
BssMI GATC 1 cut(s) 53
BssNI GRCGYC 1 cut(s) 235
Bst4CI ACNGT 2 cut(s) 23, 194
BstACI GRCGYC 1 cut(s) 235
BstDEI CTNAG 1 cut(s) 168
BstKTI GATC 1 cut(s) 56
BstMAI GTCTC 1 cut(s) 103
BstMBI GATC 1 cut(s) 53
BstV1I GCAGC 1 cut(s) 21
BsuRI GGCC 3 cut(s) 41, 160, 209
BtsI GCAGTG 1 cut(s) 296
BtsIMutI CAGTG 2 cut(s) 185, 296
Cfr13I GGNCC 2 cut(s) 159, 224
CseI GACGC 1 cut(s) 224
Csp6I GTAC 1 cut(s) 83
CviAII CATG 3 cut(s) 137, 184, 239
CviJI RGCY 6 cut(s) 12, 27, 41, 160, 209, 290
CviKI_1 RGCY 6 cut(s) 12, 27, 41, 160, 209, 290
CviQI GTAC 1 cut(s) 83
DdeI CTNAG 1 cut(s) 168
DpnI GATC 1 cut(s) 55
DpnII GATC 1 cut(s) 53
EaeI YGGCCR 1 cut(s) 39
Eco47I GGWCC 1 cut(s) 224
FaeI CATG 3 cut(s) 140, 187, 242
FaiI YATR 6 cut(s) 51, 138, 185, 222, 229, 240
FaqI GGGAC 1 cut(s) 258
FatI CATG 3 cut(s) 136, 183, 238
Fnu4HI GCNGC 1 cut(s) 10
Fsp4HI GCNGC 1 cut(s) 10
FspBI CTAG 1 cut(s) 5
GluI GCNGC 1 cut(s) 10
HaeIII GGCC 3 cut(s) 41, 160, 209
HgaI GACGC 1 cut(s) 224
Hin1I GRCGYC 1 cut(s) 235
Hin1II CATG 3 cut(s) 140, 187, 242
Hpy188I TCNGA 1 cut(s) 108
HpyAV CCTTC 1 cut(s) 38
HpyCH4III ACNGT 2 cut(s) 23, 194
HpyCH4V TGCA 5 cut(s) 116, 183, 197, 255, 296
HpyF3I CTNAG 1 cut(s) 168
Hsp92I GRCGYC 1 cut(s) 235
Hsp92II CATG 3 cut(s) 140, 187, 242
Kzo9I GATC 1 cut(s) 53
LpnPI CCDG 2 cut(s) 99, 142
Lsp1109I GCAGC 1 cut(s) 21
MaeI CTAG 1 cut(s) 5
MalI GATC 1 cut(s) 55
MboI GATC 1 cut(s) 53
MlsI TGGCCA 1 cut(s) 41
MluCI AATT 1 cut(s) 145
MluNI TGGCCA 1 cut(s) 41
MnlI CCTC 3 cut(s) 23, 137, 286
Mox20I TGGCCA 1 cut(s) 41
MscI TGGCCA 1 cut(s) 41
MslI CAYNNNNRTG 1 cut(s) 301
Msp20I TGGCCA 1 cut(s) 41
NdeII GATC 1 cut(s) 53
NlaIII CATG 3 cut(s) 140, 187, 242
OliI CACNNNNGTG 1 cut(s) 301
PkrI GCNGC 1 cut(s) 11
PspPI GGNCC 2 cut(s) 159, 224
RsaI GTAC 1 cut(s) 84
RsaNI GTAC 1 cut(s) 83
RseI CAYNNNNRTG 1 cut(s) 301
SatI GCNGC 1 cut(s) 10
Sau3AI GATC 1 cut(s) 53
Sau96I GGNCC 2 cut(s) 159, 224
SetI ASST 3 cut(s) 88, 174, 292
SgeI CNNG 9 cut(s) 17, 86, 98, 149, 169, 196, 217, 251, 299
SinI GGWCC 1 cut(s) 224
SmiMI CAYNNNNRTG 1 cut(s) 301
Sse9I AATT 1 cut(s) 145
SspMI CTAG 1 cut(s) 5
TaaI ACNGT 2 cut(s) 23, 194
TaqI TCGA 2 cut(s) 216, 286
TasI AATT 1 cut(s) 145
TscAI CASTG 2 cut(s) 185, 303
TseI GCWGC 1 cut(s) 9
TspDTI ATGAA 1 cut(s) 59
TspRI CASTG 2 cut(s) 185, 303
VpaK11BI GGWCC 1 cut(s) 224
XspI CTAG 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.