pycom15g24830

DNA polymerase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
19147609 .. 19154245
6637 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2853 bp
ATGCGATGTTTAATTAAAAAAGGAACTCCAAAACCCTACTCTACACCCACAGCCACTGACACTTGCACAGACATCCACACACAATCAATGGCGGACGACGAGCAAGCGACGGTGGCCACCAGCAGGCGGCGGAGTCGAGGACCAGAGGCGTCGGCCCGTGCCGGAGCCCTCGAACGCCTCAAAGCTCTTCGCCATGGTGGCCGCCGATCTGAAGCTGGTGGGTTCCAAATCAAGATGGAGGACCGAATCTATGACACTGTCGGAGACGACGAGTACGATGCAATCGTCGCCAAACGACGGGAAGAGGTCCGAGGCTTCATCGTCGACGACAACGGCCTAGGTTACTGCGATGAGGGCGAGGAAGAAGACTGGACTCGTGCCGGTCCGTCATCGGATGAATCGGACGGTGGCGATAGGCCCAAGAGGAAGAAAGTCGAAAAAAAGGAAAAGGAAAAGGACAAAGAGCCTCGGCCCAGAAAGCCCAGTTCGTCGCTCACTGCCGCGGCGGCGATGATGGGGAAGCAGAGGCTCTCGTCGATGTTCACGTCGTCGGTTTTTGGGAAAAATAGAGATAATGAGAGGGGGAGAGGATTGAATTGTGATAGTATTGTGGATGATGTGATTGCGGAGTTTGCACCAGATGAGGCTGACAGAGAGAAGCGGAGGAGGGGGCAATCAAACAAGATTTTGGTCCCGAATTTGAGTGTTAAGAGTGAAATTGGGTTTGATAGGGGTGTTAATTTAGCAAGGAACGTTGAATTGGATAGAGTTGTGGCAAATAATAGTGATTCTTTGGTGGGTTCTGTGCAGATTAATGAAGGGTTTGAAGAAAATGAGGCCACGAAGGAGGTGGGTTTAGAAGTCGGTGATCCCCCAATTGAGCAAAGCCATGATTTTTCAGAGGGTGGAGGGGCAATTGAGGAGAAAAATGTGGATTTTGTTGAGGAGAAAGTGGAACCTATGAAGAAAAAGGAAGAGGTTTTCACTTTGAATGCAAAGATTAAGGAAGATAACAAGGACCCGGCATTGAGTGCTATGGCGGGATGGAAGGCGGTGAGGACTGGAGGTGATGGGAATATTGGTGGTGGTGTTGTGGAGGCCAATAGCGGCTCAAATAGTGAAGAGATTTCGCAATGTGATTTGGAAGAAGATGGTTCACTGCCGTTTTACATGATTGATGCTTATGAAGAGTTCTATGGTGCTAATGTGGGCAAGCTTTATCTGTTTGGGAAGGTCAAAGCAGGAAGCACATACCAGAGTTGTTGTGTGGTTTTAGAGAACATGCAGAGATGTGTATACGCAATTCCAAAGAGTTCTGTATTTCACAGTGATGAAATCATGAAGCTTGAAAAGGATGCCGAAGAGTCGAGGATTTCATCCAGAGAATTCCGTACAAAGCTGCATGATATGGCTTCGGGTTTAAAGAGCGACATAGGAAAGAAGTTGTTGGATCTCAATATATCAGCTTTTAGCATGGCACCGGTTAAGAGGAGCTATGCATTTGAGCGATCTGACATACCTGCAGGAGAGAATTATGTACTTAAGATCAATTATCCATTCAAGGATCCCCCACTTCCAGCAGATCTTGAAGGAGAAACATTCCTTGCCCTTCTCGGAACACATACCAGCGCTTTGGAGCTTTTTCTTGTTAAAAGGAAGATAAAAGGCCCTTCTTGGTTATCAGTTTCAGGTTCAGAGTTTCGTCCAGTTTCACAACGGGTAAGTTGGTGCAAATTGGAGGTGGTTGTTAAATCTGCAAAAGACATACAGGTCTCAAATTGCCCAAAGAAAACTGCAGAGGCTCCCCCAGTGGTTGTTACTGCAATAAGTTTGAAAACTATTAATTTTGATGAAATTGTCTCTGCATCTGTTATCTGCTGTCACAAGGCCAAGATTGACACTCCCGTGTTAGCATCGGAGTGGACGAAACCTGGCATGCTGAGCCATTTTACTGTTGTCCGTAAACTTGATGGAGGCATATTTCCAATGGGCTTCACTAAGGAGGCTACAGAAAAGAATTCTAAAGATCGATCAAATGTTTTAAGCATCGAAAGCACTGAAAGGGCTTTACTAAACCGTTTGATGATTGAATTACACAAGTTGGATAGTGATGTTCTTGTTGGACACAATATATCTGGGTTTGACCTGGATGTCCTTCTCCGCAGAGCTAAGGTTTGTAAGGTGCCAAACTCAATGTGGTCCAAAATAGGCCGCCTTAAGCGTTCTGGGATGCCTAACCTTGCAAAAGGAAGCTCCATTTTTGGGTCTGGAGCAAGTCTAGGGATCTTGTCCTGCATTTCTGGTCGCCTTTTGTGTGATACATACTTGTGTTCCCGTGACTTATTAAGGGAGGTTAGCTATTCTTTGACACAACTTGCAAAGACTCAGCTGAATAAAGACCGAAAGGAGATCATGCCACATGATATTCCTAGAATGTTCCAGAAATCAGAATTTCTAATGGAACTGATTGAATATGGTGAGACAGATGCATGGCTGTCTATGGAACTCATGTTTCATTTGAGTGTTCTTCCCCTCACACGTCAGCTGACAAAGATAAGCGGTAATCTGTGGGGAAAAACCCTACAAGGTGCTAGGGCACAAAGAGTAGAATATCTTTTACTGCATGCCTTCCATGCAAAGAAGTATATTGTTCCAGACAAGATTCCTCATCTGAAGGAAACAAATTCGGCAAAGCGTAAAACAGATAATGGTGTTGATTATAAAAATGTTGATGAGGTGGATGTAAATTTTGATAATGAGGCAAAGAAGGATCCGAACAAATCATGGGAAAGGCAAGAAAGGTCCTGCCTATGCAGGTGGATTGGTATTGGAGCCAAAAAAAGGGTTATATGA

Protein Analysis

951

Amino Acids

105.71

Weight (kDa)

7.2

Isoelectric Point (pI)

45.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_pol_alpha_N PF12254 57 - 124 1.4e-19 DNA polymerase alpha subunit p180 N terminal
DNA_pol_B_exo1 PF03104 540 - 790 2.1e-26 DNA polymerase family B, exonuclease domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000310)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G67100 AT5G67100
fragaria_vesca FvH4_1g20001 FvH4_1g22730 FvH4_1g22730 FvH4_1g22730 FvH4_6g13861 FvH4_6g33603
malus_domestica MD02G1174100.v1.1 MD02G1174200.v1.1 MD02G1174400.v1.1 MD15G1285400.v1.1
prunus_persica Prupe.7G131600_v2.0.a1
pyrus_communis pycom02g14040 pycom02g14050 pycom02g14060 pycom02g14070 pycom15g24830 pycom15g24840
rosa_chinensis RchiOBHm_Chr2g0109901 RchiOBHm_Chr2g0117021 RchiOBHm_Chr2g0168121 RchiOBHm_Chr4g0394581
rosa_laevigata RLG00000001621 RLG00000001943 RLG00000003450 RLG00000006116 RLG00000006535 RLG00000008147 RLG00000009121 RLG00000010680 RLG00000013987 RLG00000017585 RLG00000017603 RLG00000017638 RLG00000017923 RLG00000018320 RLG00000021520 RLG00000022613 RLG00000022614 RLG00000023966 RLG00000025998 RLG00000027760 RLG00000033421
rosa_multiflora Rmu_co7985806.1_g000001 Rmu_co8250293.1_g000001 Rmu_co8353517.1_g000001 Rmu_sc0000697.1_g000011 Rmu_sc0000776.1_g000079 Rmu_sc0001023.1_g000057 Rmu_sc0001266.1_g000019 Rmu_sc0002711.1_g000010 Rmu_sc0002731.1_g000005 Rmu_sc0003002.1_g000047 Rmu_sc0003030.1_g000002 Rmu_sc0003672.1_g000003 Rmu_sc0004168.1_g000062 Rmu_sc0004180.1_g000003 Rmu_sc0009205.1_g000008 Rmu_sc0011259.1_g000001 Rmu_sc0011259.1_g000002 Rmu_sc0027274.1_g000001
rosa_roxburghii Rroxscaffold_1G00023520 Rroxscaffold_2G00104450 Rroxscaffold_2G00126810 Rroxscaffold_2G00144870 Rroxscaffold_4G00315680 Rroxscaffold_4G00331480 Rroxscaffold_7G00182820
rosa_rugosa Rorug02G0209600 Rorug04G0130600 Rorug04G0130600 Rorug04G0130700 Rorug05G0230000
rosa_samantha Rh1AG170000 Rh1CG157700 Rh1CG385600 Rh2AG215100 Rh2AG265500 Rh2BG277300 Rh2CG217600 Rh2CG217700 Rh2DG220600 Rh2DG272800 Rh2DG291800 Rh3AG215700 Rh3BG271700 Rh3DG075200 Rh3DG242600 Rh4AG115400 Rh4AG138100 Rh4AG333600 Rh4BG115100 Rh4BG366300 Rh4CG125400 Rh4CG380400 Rh4DG083500 Rh4DG113200 Rh4DG192900 Rh4DG246300 Rh5AG075000 Rh5BG482300 Rh5CG181200 Rh5CG247200 Rh5CG506900 Rh5DG167600 Rh5DG202900 Rh6AG000500 Rh6AG213400 Rh6BG335800 Rh6CG255700 Rh7AG337500 Rh7BG404500 Rh7BG461500 Rh7CG355600
rosa_wichuraiana Rw0G019110 Rw2G020950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2721
AarI CACCTGC 1 cut(s) 2805
AasI GACNNNNNNGTC 2 cut(s) 1769, 2150
Acc36I ACCTGC 2 cut(s) 1528, 2805
AccB1I GGYRCC 2 cut(s) 1477, 2182
AccI GTMKAC 2 cut(s) 324, 1296
AccII CGCG 1 cut(s) 503
AclI AACGTT 1 cut(s) 753
AclWI GGATC 7 cut(s) 863, 1458, 1559, 1572, 2291, 2765, 2778
AcoI YGGCCR 2 cut(s) 114, 199
AcsI RAATTY 6 cut(s) 697, 1385, 2017, 2450, 2683, 2746
AcuI CTGAAG 2 cut(s) 231, 2693
AcyI GRCGYC 1 cut(s) 149
AfaI GTAC 3 cut(s) 275, 1393, 1539
AfeI AGCGCT 1 cut(s) 1630
AfiI CCNNNNNNNGG 5 cut(s) 123, 126, 297, 2262, 2841
AflII CTTAAG 2 cut(s) 1541, 2216
AflIII ACRYGT 1 cut(s) 2537
AgeI ACCGGT 1 cut(s) 1480
AjiI CACGTC 2 cut(s) 546, 2540
AjnI CCWGG 2 cut(s) 1930, 2145
AjuI GAANNNNNNNTTGG 2 cut(s) 743, 775
AleI CACNNNNGTG 1 cut(s) 1904
Alw26I GTCTC 4 cut(s) 258, 1777, 1864, 2474
AlwI GGATC 7 cut(s) 863, 1458, 1559, 1572, 2291, 2765, 2778
AlwNI CAGNNNCTG 1 cut(s) 56
Aor51HI AGCGCT 1 cut(s) 1630
ApeKI GCWGC 1 cut(s) 1399
ApoI RAATTY 6 cut(s) 697, 1385, 2017, 2450, 2683, 2746
AseI ATTAAT 2 cut(s) 813, 1842
AsiGI ACCGGT 1 cut(s) 1480
AspA2I CCTAGG 1 cut(s) 337
AspLEI GCGC 1 cut(s) 1631
AsuC2I CCSGG 1 cut(s) 1022
AsuHPI GGTGA 4 cut(s) 878, 1066, 1079, 2489
AvaII GGWCC 8 cut(s) 140, 241, 307, 383, 691, 1018, 2199, 2802
AvrII CCTAGG 1 cut(s) 337
BaeGI GKGCMC 1 cut(s) 2599
BalI TGGCCA 1 cut(s) 116
BamHI GGATCC 2 cut(s) 1564, 2770
BanI GGYRCC 2 cut(s) 1477, 2182
BanII GRGCYC 1 cut(s) 169
BauI CACGAG 1 cut(s) 375
BbsI GAAGAC 1 cut(s) 372
BbvI GCAGC 1 cut(s) 1386
BccI CCATC 6 cut(s) 229, 508, 1038, 1064, 1145, 1964
BceAI ACGGC 2 cut(s) 349, 1147
BcgI CGANNNNNNTGC 2 cut(s) 260, 294
BciT130I CCWGG 2 cut(s) 1932, 2147
BcnI CCSGG 1 cut(s) 1022
BcoDI GTCTC 4 cut(s) 258, 1777, 1864, 2474
BfaI CTAG 4 cut(s) 338, 2279, 2430, 2592
BfmI CTRYAG 3 cut(s) 1521, 1794, 2007
BfoI RGCGCY 1 cut(s) 1632
BfrI CTTAAG 2 cut(s) 1541, 2216
BfuAI ACCTGC 2 cut(s) 1528, 2805
BglI GCCNNNNNGGC 2 cut(s) 198, 506
BglII AGATCT 1 cut(s) 1582
BisI GCNGC 8 cut(s) 128, 202, 501, 504, 507, 1108, 1400, 2212
BlnI CCTAGG 1 cut(s) 337
BlpI GCTNAGC 1 cut(s) 1940
BlsI GCNGC 8 cut(s) 129, 203, 502, 505, 508, 1109, 1401, 2213
Bme1390I CCNGG 3 cut(s) 1022, 1932, 2147
Bme18I GGWCC 8 cut(s) 140, 241, 307, 383, 691, 1018, 2199, 2802
BmgBI CACGTC 2 cut(s) 546, 2540
BmrFI CCNGG 3 cut(s) 1022, 1932, 2147
BmrI ACTGGG 2 cut(s) 477, 1802
BmsI GCATC 8 cut(s) 268, 1168, 1345, 1874, 1922, 2055, 2220, 2476
BmuI ACTGGG 2 cut(s) 477, 1802
BpiI GAAGAC 1 cut(s) 372
BpmI CTGGAG 2 cut(s) 1083, 2289
Bpu10I CCTNAGC 1 cut(s) 2169
Bpu1102I GCTNAGC 1 cut(s) 1940
BpuMI CCSGG 1 cut(s) 1022
Bsa29I ATCGAT 1 cut(s) 2029
BsaHI GRCGYC 1 cut(s) 149
BsaI GGTCTC 1 cut(s) 1777
BsaJI CCNNGG 5 cut(s) 193, 310, 337, 467, 501
BsaWI WCCGGW 1 cut(s) 1480
Bsc4I CCNNNNNNNGG 5 cut(s) 123, 126, 297, 2262, 2841
Bse118I RCCGGY 2 cut(s) 380, 1480
Bse1I ACTGG 5 cut(s) 374, 483, 1066, 1706, 1808
Bse3DI GCAATG 1 cut(s) 1139
BseBI CCWGG 2 cut(s) 1932, 2147
BseCI ATCGAT 1 cut(s) 2029
BseDI CCNNGG 5 cut(s) 193, 310, 337, 467, 501
BseGI GGATG 9 cut(s) 72, 400, 619, 1049, 1360, 1376, 2155, 2235, 2746
BseLI CCNNNNNNNGG 5 cut(s) 123, 126, 297, 2262, 2841
BseMI GCAATG 1 cut(s) 1139
BseMII CTCAG 2 cut(s) 1931, 2399
BseNI ACTGG 5 cut(s) 374, 483, 1066, 1706, 1808
BseRI GAGGAG 4 cut(s) 679, 935, 959, 1504
BseSI GKGCMC 1 cut(s) 2599
BseXI GCAGC 1 cut(s) 1386
BsgI GTGCAG 1 cut(s) 827
Bsh1236I CGCG 1 cut(s) 503
BshNI GGYRCC 2 cut(s) 1477, 2182
BshTI ACCGGT 1 cut(s) 1480
BshVI ATCGAT 1 cut(s) 2029
BsiSI CCGG 4 cut(s) 162, 381, 1022, 1481
BslFI GGGAC 1 cut(s) 677
BslI CCNNNNNNNGG 5 cut(s) 123, 126, 297, 2262, 2841
BsmAI GTCTC 4 cut(s) 258, 1777, 1864, 2474
BsmBI CGTCTC 1 cut(s) 258
BsmFI GGGAC 1 cut(s) 677
BsmI GAATGC 1 cut(s) 997
Bso31I GGTCTC 1 cut(s) 1777
Bsp1286I GDGCHC 2 cut(s) 169, 2599
Bsp1720I GCTNAGC 1 cut(s) 1940
Bsp19I CCATGG 1 cut(s) 193
BspCNI CTCAG 2 cut(s) 1932, 2398
BspDI ATCGAT 1 cut(s) 2029
BspFNI CGCG 1 cut(s) 503
BspHI TCATGA 1 cut(s) 1338
BspMAI CTGCAG 2 cut(s) 1525, 1798
BspMI ACCTGC 2 cut(s) 1528, 2805
BspPI GGATC 7 cut(s) 863, 1458, 1559, 1572, 2291, 2765, 2778
BspQI GCTCTTC 1 cut(s) 192
BspT107I GGYRCC 2 cut(s) 1477, 2182
BspTI CTTAAG 2 cut(s) 1541, 2216
BspTNI GGTCTC 1 cut(s) 1777
BsrDI GCAATG 1 cut(s) 1139
BsrFI RCCGGY 2 cut(s) 380, 1480
BsrI ACTGG 5 cut(s) 374, 483, 1066, 1706, 1808
BssAI RCCGGY 2 cut(s) 380, 1480
BssECI CCNNGG 5 cut(s) 193, 310, 337, 467, 501
BssNAI GTATAC 1 cut(s) 1297
BssNI GRCGYC 1 cut(s) 149
BssSI CACGAG 1 cut(s) 375
BssT1I CCWWGG 2 cut(s) 193, 337
Bst1107I GTATAC 1 cut(s) 1297
Bst2BI CACGAG 1 cut(s) 375
Bst2UI CCWGG 2 cut(s) 1932, 2147
Bst4CI ACNGT 6 cut(s) 112, 259, 407, 1328, 1954, 2078
Bst6I CTCTTC 6 cut(s) 192, 297, 969, 1116, 1182, 1356
BstACI GRCGYC 1 cut(s) 149
BstAFI CTTAAG 2 cut(s) 1541, 2216
BstAPI GCANNNNNTGC 1 cut(s) 1031
BstC8I GCNNGC 5 cut(s) 105, 125, 1214, 1937, 2625
BstDEI CTNAG 4 cut(s) 1940, 1998, 2169, 2385
BstDSI CCRYGG 2 cut(s) 193, 501
BstF5I GGATG 9 cut(s) 72, 400, 619, 1049, 1360, 1376, 2155, 2235, 2746
BstFNI CGCG 1 cut(s) 503
BstH2I RGCGCY 1 cut(s) 1632
BstHHI GCGC 1 cut(s) 1631
BstMAI GTCTC 4 cut(s) 258, 1777, 1864, 2474
BstNI CCWGG 2 cut(s) 1932, 2147
BstNSI RCATGY 3 cut(s) 1285, 1939, 2627
BstSCI CCNGG 3 cut(s) 1020, 1930, 2145
BstSFI CTRYAG 3 cut(s) 1521, 1794, 2007
BstSLI GKGCMC 1 cut(s) 2599
BstUI CGCG 1 cut(s) 503
BstV1I GCAGC 1 cut(s) 1386
BstV2I GAAGAC 1 cut(s) 372
BstX2I RGATCY 5 cut(s) 1450, 1564, 1582, 2283, 2770
BstXI CCANNNNNNTGG 1 cut(s) 1633
BstYI RGATCY 5 cut(s) 1450, 1564, 1582, 2283, 2770
BstZ17I GTATAC 1 cut(s) 1297
Bsu15I ATCGAT 1 cut(s) 2029
BsuTUI ATCGAT 1 cut(s) 2029
BtgI CCRYGG 2 cut(s) 193, 501
BtgZI GCGATG 3 cut(s) 19, 363, 524
BtrI CACGTC 2 cut(s) 546, 2540
BtsCI GGATG 9 cut(s) 72, 400, 619, 1049, 1360, 1376, 2155, 2235, 2746
BtsI GCAGTG 2 cut(s) 495, 1157
BtsIMutI CAGTG 7 cut(s) 54, 255, 495, 1157, 1333, 1815, 2055
BveI ACCTGC 2 cut(s) 1528, 2805
Cac8I GCNNGC 5 cut(s) 105, 125, 1214, 1937, 2625
CaiI CAGNNNCTG 1 cut(s) 56
CciI TCATGA 1 cut(s) 1338
CfoI GCGC 1 cut(s) 1631
Cfr10I RCCGGY 2 cut(s) 380, 1480
Cfr42I CCGCGG 1 cut(s) 504
ClaI ATCGAT 1 cut(s) 2029
CpoI CGGWCCG 1 cut(s) 383
CseI GACGC 1 cut(s) 138
Csp6I GTAC 3 cut(s) 274, 1392, 1538
CspAI ACCGGT 1 cut(s) 1480
CspI CGGWCCG 1 cut(s) 383
CviQI GTAC 3 cut(s) 274, 1392, 1538
DdeI CTNAG 4 cut(s) 1940, 1998, 2169, 2385
DraI TTTAAA 1 cut(s) 1422
DrdI GACNNNNNNGTC 2 cut(s) 1769, 2150
DseDI GACNNNNNNGTC 2 cut(s) 1769, 2150
EaeI YGGCCR 2 cut(s) 114, 199
Eam1104I CTCTTC 6 cut(s) 192, 297, 969, 1116, 1182, 1356
EarI CTCTTC 6 cut(s) 192, 297, 969, 1116, 1182, 1356
EciI GGCGGA 2 cut(s) 107, 145
Eco130I CCWWGG 2 cut(s) 193, 337
Eco24I GRGCYC 1 cut(s) 169
Eco31I GGTCTC 1 cut(s) 1777
Eco47I GGWCC 8 cut(s) 140, 241, 307, 383, 691, 1018, 2199, 2802
Eco47III AGCGCT 1 cut(s) 1630
Eco57I CTGAAG 2 cut(s) 231, 2693
EcoO109I RGGNCCY 3 cut(s) 1018, 1667, 2802
EcoRI GAATTC 2 cut(s) 1385, 2017
EcoRII CCWGG 2 cut(s) 1930, 2145
EcoT14I CCWWGG 2 cut(s) 193, 337
EcoT22I ATGCAT 2 cut(s) 1501, 2491
EcoT38I GRGCYC 1 cut(s) 169
ErhI CCWWGG 2 cut(s) 193, 337
Esp3I CGTCTC 1 cut(s) 258
FaqI GGGAC 1 cut(s) 677
FauI CCCGC 1 cut(s) 1033
FblI GTMKAC 2 cut(s) 324, 1296
Fnu4HI GCNGC 8 cut(s) 128, 202, 501, 504, 507, 1108, 1400, 2212
FokI GGATG 9 cut(s) 59, 407, 626, 1056, 1363, 1367, 2162, 2242, 2753
FriOI GRGCYC 1 cut(s) 169
Fsp4HI GCNGC 8 cut(s) 128, 202, 501, 504, 507, 1108, 1400, 2212
FspBI CTAG 4 cut(s) 338, 2279, 2430, 2592
GlaI GCGC 1 cut(s) 1630
GluI GCNGC 8 cut(s) 128, 202, 501, 504, 507, 1108, 1400, 2212
GsuI CTGGAG 2 cut(s) 1083, 2289
HaeII RGCGCY 1 cut(s) 1632
HapII CCGG 4 cut(s) 162, 381, 1022, 1481
HgaI GACGC 1 cut(s) 138
HhaI GCGC 1 cut(s) 1631
Hin1I GRCGYC 1 cut(s) 149
Hin6I GCGC 1 cut(s) 1629
HinP1I GCGC 1 cut(s) 1629
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HindIII AAGCTT 2 cut(s) 1214, 1343
HinfI GANTC 8 cut(s) 133, 246, 373, 398, 788, 1364, 2383, 2662
HpaII CCGG 4 cut(s) 162, 381, 1022, 1481
HphI GGTGA 4 cut(s) 878, 1066, 1079, 2489
Hpy166II GTNNAC 6 cut(s) 325, 543, 1157, 1297, 1923, 1964
Hpy188III TCNNGA 8 cut(s) 232, 694, 1339, 1380, 1586, 2268, 2440, 2654
Hpy8I GTNNAC 6 cut(s) 325, 543, 1157, 1297, 1923, 1964
HpyCH4III ACNGT 6 cut(s) 112, 259, 407, 1328, 1954, 2078
HpyCH4IV ACGT 3 cut(s) 545, 753, 2539
HpyF3I CTNAG 4 cut(s) 1940, 1998, 2169, 2385
HpySE526I ACGT 3 cut(s) 545, 753, 2539
Hsp92I GRCGYC 1 cut(s) 149
HspAI GCGC 1 cut(s) 1629
KspI CCGCGG 1 cut(s) 504
LguI GCTCTTC 1 cut(s) 192
LmnI GCTCC 7 cut(s) 164, 1491, 1636, 1807, 2258, 2270, 2831
Lsp1109I GCAGC 1 cut(s) 1386
LweI GCATC 8 cut(s) 268, 1168, 1345, 1874, 1922, 2055, 2220, 2476
MaeI CTAG 4 cut(s) 338, 2279, 2430, 2592
MaeII ACGT 3 cut(s) 545, 753, 2539
MaeIII GTNAC 4 cut(s) 341, 1816, 1880, 2336
MfeI CAATTG 2 cut(s) 876, 915
MflI RGATCY 5 cut(s) 1450, 1564, 1582, 2283, 2770
MhlI GDGCHC 2 cut(s) 169, 2599
MlsI TGGCCA 1 cut(s) 116
MluNI TGGCCA 1 cut(s) 116
MlyI GAGTC 4 cut(s) 142, 367, 1373, 2377
MmeI TCCRAC 4 cut(s) 241, 1428, 2082, 2101
Mox20I TGGCCA 1 cut(s) 116
Mph1103I ATGCAT 2 cut(s) 1501, 2491
MscI TGGCCA 1 cut(s) 116
MslI CAYNNNNRTG 5 cut(s) 1329, 1904, 1918, 2326, 2520
Msp20I TGGCCA 1 cut(s) 116
MspA1I CMGCKG 3 cut(s) 503, 2389, 2545
MspCI CTTAAG 2 cut(s) 1541, 2216
MspI CCGG 4 cut(s) 162, 381, 1022, 1481
MspR9I CCNGG 3 cut(s) 1022, 1932, 2147
MunI CAATTG 2 cut(s) 876, 915
Mva1269I GAATGC 1 cut(s) 997
MvaI CCWGG 2 cut(s) 1932, 2147
MvnI CGCG 1 cut(s) 503
NciI CCSGG 1 cut(s) 1022
NcoI CCATGG 1 cut(s) 193
NmeAIII GCCGAG 1 cut(s) 448
NmuCI GTSAC 2 cut(s) 1880, 2336
NsiI ATGCAT 2 cut(s) 1501, 2491
NspI RCATGY 3 cut(s) 1285, 1939, 2627
OliI CACNNNNGTG 1 cut(s) 1904
PacI TTAATTAA 1 cut(s) 15
PaeI GCATGC 2 cut(s) 1939, 2627
PagI TCATGA 1 cut(s) 1338
PaqCI CACCTGC 1 cut(s) 2805
PciSI GCTCTTC 1 cut(s) 192
PcsI WCGNNNNNNNCGW 5 cut(s) 267, 273, 282, 542, 1922
PctI GAATGC 1 cut(s) 997
PfeI GAWTC 4 cut(s) 246, 398, 788, 2662
PflFI GACNNNGTC 1 cut(s) 257
PinAI ACCGGT 1 cut(s) 1480
PkrI GCNGC 8 cut(s) 129, 203, 502, 505, 508, 1109, 1401, 2213
PleI GAGTC 4 cut(s) 141, 367, 1372, 2377
PpsI GAGTC 4 cut(s) 141, 367, 1372, 2377
PpuMI RGGWCCY 2 cut(s) 1018, 2802
PshBI ATTAAT 2 cut(s) 813, 1842
PsiI TTATAA 1 cut(s) 2721
Psp1406I AACGTT 1 cut(s) 753
Psp5II RGGWCCY 2 cut(s) 1018, 2802
Psp6I CCWGG 2 cut(s) 1930, 2145
PspGI CCWGG 2 cut(s) 1930, 2145
PspPPI RGGWCCY 2 cut(s) 1018, 2802
PstI CTGCAG 2 cut(s) 1525, 1798
PstNI CAGNNNCTG 1 cut(s) 56
PsuI RGATCY 5 cut(s) 1450, 1564, 1582, 2283, 2770
PsyI GACNNNGTC 1 cut(s) 257
PvuII CAGCTG 2 cut(s) 2389, 2545
RsaI GTAC 3 cut(s) 275, 1393, 1539
RsaNI GTAC 3 cut(s) 274, 1392, 1538
RseI CAYNNNNRTG 5 cut(s) 1329, 1904, 1918, 2326, 2520
Rsr2I CGGWCCG 1 cut(s) 383
RsrII CGGWCCG 1 cut(s) 383
SacII CCGCGG 1 cut(s) 504
SalI GTCGAC 1 cut(s) 323
SapI GCTCTTC 1 cut(s) 192
SatI GCNGC 8 cut(s) 128, 202, 501, 504, 507, 1108, 1400, 2212
SbfI CCTGCAGG 1 cut(s) 1525
SchI GAGTC 4 cut(s) 142, 367, 1373, 2377
ScrFI CCNGG 3 cut(s) 1022, 1932, 2147
SdaI CCTGCAGG 1 cut(s) 1525
SduI GDGCHC 2 cut(s) 169, 2599
SfaNI GCATC 8 cut(s) 268, 1168, 1345, 1874, 1922, 2055, 2220, 2476
SfcI CTRYAG 3 cut(s) 1521, 1794, 2007
Sfr303I CCGCGG 1 cut(s) 504
SgrBI CCGCGG 1 cut(s) 504
SgrDI CGTCGACG 1 cut(s) 323
SinI GGWCC 8 cut(s) 140, 241, 307, 383, 691, 1018, 2199, 2802
SmiMI CAYNNNNRTG 5 cut(s) 1329, 1904, 1918, 2326, 2520
SmlI CTYRAG 2 cut(s) 1541, 2216
SmoI CTYRAG 2 cut(s) 1541, 2216
SphI GCATGC 2 cut(s) 1939, 2627
Sse8387I CCTGCAGG 1 cut(s) 1525
SspI AATATT 1 cut(s) 1078
SspMI CTAG 4 cut(s) 338, 2279, 2430, 2592
StyD4I CCNGG 3 cut(s) 1020, 1930, 2145
StyI CCWWGG 2 cut(s) 193, 337
TaaI ACNGT 6 cut(s) 112, 259, 407, 1328, 1954, 2078
TaiI ACGT 3 cut(s) 548, 756, 2542
TaqI TCGA 8 cut(s) 136, 171, 324, 435, 536, 1367, 2029, 2049
TaqII GACCGA 2 cut(s) 258, 2415
TatI WGTACW 1 cut(s) 1537
TauI GCSGC 7 cut(s) 130, 204, 503, 506, 509, 1110, 2214
TfiI GAWTC 4 cut(s) 246, 398, 788, 2662
TscAI CASTG 7 cut(s) 61, 262, 502, 1164, 1333, 1815, 2062
TseFI GTSAC 2 cut(s) 1880, 2336
TseI GCWGC 1 cut(s) 1399
Tsp45I GTSAC 2 cut(s) 1880, 2336
TspGWI ACGGA 3 cut(s) 375, 1379, 1949
TspRI CASTG 7 cut(s) 61, 262, 502, 1164, 1333, 1815, 2062
Tth111I GACNNNGTC 1 cut(s) 257
Vha464I CTTAAG 2 cut(s) 1541, 2216
VpaK11BI GGWCC 8 cut(s) 140, 241, 307, 383, 691, 1018, 2199, 2802
VspI ATTAAT 2 cut(s) 813, 1842
XapI RAATTY 6 cut(s) 697, 1385, 2017, 2450, 2683, 2746
XceI RCATGY 3 cut(s) 1285, 1939, 2627
XcmI CCANNNNNNNNNTGG 2 cut(s) 847, 2193
XmaJI CCTAGG 1 cut(s) 337
XmiI GTMKAC 2 cut(s) 324, 1296
XspI CTAG 4 cut(s) 338, 2279, 2430, 2592
Zsp2I ATGCAT 2 cut(s) 1501, 2491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.