RchiOBHm_Chr0c22g0500541
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_chinensis
Unknown
OG0000416
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 180 bp
ATGCCTAATAGGAGCTTAGAAGATCATCTTTTCAACAGGGTTTTGAACCCTCTTCCTTGGATCACGAGGTTACAAATAATGCTTGGTGCTGCTCAAGCTCGGATTGGCTTATCTACACGAGGGACTGGAAGTCCAGGTGATATATCGAGATTTCAAATCCTCCAACGTGCTCTTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

59

Amino Acids

6.56

Weight (kDa)

11.88

Isoelectric Point (pI)

49.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47070
fragaria_vesca FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_5g20770 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930 FvH4_7g08930
malus_domestica MD02G1222400.v1.1 MD04G1053100.v1.1 MD06G1044400.v1.1 MD07G1093200.v1.1
prunus_persica Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.2G118500_v2.0.a1 Prupe.5G052200_v2.0.a1 Prupe.5G052200_v2.0.a1
pyrus_communis pycom02g18890 pycom04g04660 pycom06g03780 pycom07g07640
rosa_chinensis RchiOBHm_Chr0c22g0500461 RchiOBHm_Chr0c22g0500491 RchiOBHm_Chr0c22g0500531 RchiOBHm_Chr0c22g0500541 RchiOBHm_Chr0c22g0500641 RchiOBHm_Chr0c22g0500691 RchiOBHm_Chr1g0344381 RchiOBHm_Chr6g0259661 RchiOBHm_Chr6g0259701 RchiOBHm_Chr7g0205471 RchiOBHm_Chr7g0206561 RchiOBHm_Chr7g0206611 RchiOBHm_Chr7g0206731 RchiOBHm_Chr7g0206741 RchiOBHm_Chr7g0206781 RchiOBHm_Chr7g0206801 RchiOBHm_Chr7g0206811 RchiOBHm_Chr7g0206831 RchiOBHm_Chr7g0206861 RchiOBHm_Chr7g0206891 RchiOBHm_Chr7g0206981 RchiOBHm_Chr7g0206991 RchiOBHm_Chr7g0207071 RchiOBHm_Chr7g0207121 RchiOBHm_Chr7g0207151 RchiOBHm_Chr7g0207181 RchiOBHm_Chr7g0207241 RchiOBHm_Chr7g0207251 RchiOBHm_Chr7g0207261 RchiOBHm_Chr7g0207411 RchiOBHm_Chr7g0207471 RchiOBHm_Chr7g0207701
rosa_laevigata RLG00000003296 RLG00000003302 RLG00000003326 RLG00000003346 RLG00000028901
rosa_multiflora Rmu_sc0000536.1_g000001 Rmu_sc0000536.1_g000002 Rmu_sc0004987.1_g000003 Rmu_sc0008509.1_g000002 Rmu_sc0008509.1_g000029 Rmu_sc0012558.1_g000001 Rmu_sc0013160.1_g000002 Rmu_sc0014912.1_g000004
rosa_roxburghii Rroxscaffold_3G00251310 Rroxscaffold_3G00251320 Rroxscaffold_3G00251410 Rroxscaffold_3G00252190 Rroxscaffold_4G00309810 Rroxscaffold_7G00206970 Rroxscaffold_7G00207090
rosa_rugosa Rorug01G0173500 Rorug01G0173600 Rorug05G0590200 Rorug07G0096400 Rorug07G0096700 Rorug07G0096900 Rorug07G0098500 Rorug07G0099000
rosa_samantha Rh1AG189700 Rh1BG156700 Rh1DG188100 Rh7BG221600 Rh7BG225000 Rh7BG225300 Rh7BG227500 Rh7BG227700 Rh7CG244800
rosa_wichuraiana Rw1G015650 Rw6G009210 Rw7G019820 Rw7G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 68
AgsI TTSAA 3 cut(s) 34, 46, 155
AhdI GACNNNNNGTC 1 cut(s) 129
AjnI CCWGG 1 cut(s) 133
AluBI AGCT 2 cut(s) 15, 98
AluI AGCT 2 cut(s) 15, 98
Alw21I GWGCWC 1 cut(s) 172
AlwI GGATC 1 cut(s) 68
ApeKI GCWGC 1 cut(s) 89
AsuHPI GGTGA 1 cut(s) 149
BauI CACGAG 2 cut(s) 64, 117
Bbv12I GWGCWC 1 cut(s) 172
BbvI GCAGC 1 cut(s) 76
BciT130I CCWGG 1 cut(s) 135
BisI GCNGC 1 cut(s) 90
BlsI GCNGC 1 cut(s) 91
Bme1390I CCNGG 1 cut(s) 135
BmeRI GACNNNNNGTC 1 cut(s) 129
BmrFI CCNGG 1 cut(s) 135
BpuEI CTTGAG 1 cut(s) 78
BsaJI CCNNGG 1 cut(s) 56
Bse1I ACTGG 1 cut(s) 130
BseBI CCWGG 1 cut(s) 135
BseDI CCNNGG 1 cut(s) 56
BseNI ACTGG 1 cut(s) 130
BseXI GCAGC 1 cut(s) 76
BsiHKAI GWGCWC 1 cut(s) 172
BslFI GGGAC 1 cut(s) 136
BsmFI GGGAC 1 cut(s) 136
Bsp1286I GDGCHC 1 cut(s) 172
Bsp143I GATC 2 cut(s) 22, 60
BspPI GGATC 1 cut(s) 68
BsrI ACTGG 1 cut(s) 130
BssECI CCNNGG 1 cut(s) 56
BssMI GATC 2 cut(s) 22, 60
BssSI CACGAG 2 cut(s) 64, 117
BssT1I CCWWGG 1 cut(s) 56
Bst2BI CACGAG 2 cut(s) 64, 117
Bst2UI CCWGG 1 cut(s) 135
Bst6I CTCTTC 1 cut(s) 57
BstDEI CTNAG 1 cut(s) 16
BstKTI GATC 2 cut(s) 25, 63
BstMBI GATC 2 cut(s) 22, 60
BstMWI GCNNNNNNNGC 1 cut(s) 95
BstNI CCWGG 1 cut(s) 135
BstSCI CCNGG 1 cut(s) 133
BstV1I GCAGC 1 cut(s) 76
CviJI RGCY 3 cut(s) 15, 98, 108
CviKI_1 RGCY 3 cut(s) 15, 98, 108
DdeI CTNAG 1 cut(s) 16
DpnI GATC 2 cut(s) 24, 62
DpnII GATC 2 cut(s) 22, 60
DriI GACNNNNNGTC 1 cut(s) 129
Eam1104I CTCTTC 1 cut(s) 57
Eam1105I GACNNNNNGTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 57
Eco130I CCWWGG 1 cut(s) 56
EcoRII CCWGG 1 cut(s) 133
EcoT14I CCWWGG 1 cut(s) 56
ErhI CCWWGG 1 cut(s) 56
FaiI YATR 1 cut(s) 143
FalI AAGNNNNNCTT 2 cut(s) 12, 44
FaqI GGGAC 1 cut(s) 136
Fnu4HI GCNGC 1 cut(s) 90
Fsp4HI GCNGC 1 cut(s) 90
GluI GCNGC 1 cut(s) 90
HphI GGTGA 1 cut(s) 149
Hpy188I TCNGA 1 cut(s) 102
Hpy188III TCNNGA 2 cut(s) 64, 147
HpyCH4IV ACGT 1 cut(s) 166
HpyF10VI GCNNNNNNNGC 1 cut(s) 95
HpyF3I CTNAG 1 cut(s) 16
HpySE526I ACGT 1 cut(s) 166
Kzo9I GATC 2 cut(s) 22, 60
LmnI GCTCC 1 cut(s) 12
LpnPI CCDG 4 cut(s) 22, 111, 120, 147
Lsp1109I GCAGC 1 cut(s) 76
MaeII ACGT 1 cut(s) 166
MaeIII GTNAC 1 cut(s) 69
MalI GATC 2 cut(s) 24, 62
MboI GATC 2 cut(s) 22, 60
MboII GAAGA 2 cut(s) 32, 44
MhlI GDGCHC 1 cut(s) 172
MnlI CCTC 4 cut(s) 60, 60, 113, 170
MspR9I CCNGG 1 cut(s) 135
MvaI CCWGG 1 cut(s) 135
MwoI GCNNNNNNNGC 1 cut(s) 95
NdeII GATC 2 cut(s) 22, 60
PkrI GCNGC 1 cut(s) 91
Psp6I CCWGG 1 cut(s) 133
PspGI CCWGG 1 cut(s) 133
SatI GCNGC 1 cut(s) 90
Sau3AI GATC 2 cut(s) 22, 60
ScrFI CCNGG 1 cut(s) 135
SduI GDGCHC 1 cut(s) 172
SetI ASST 5 cut(s) 17, 71, 100, 139, 169
SmlI CTYRAG 1 cut(s) 93
SmoI CTYRAG 1 cut(s) 93
StyD4I CCNGG 1 cut(s) 133
StyI CCWWGG 1 cut(s) 56
TaiI ACGT 1 cut(s) 169
TaqI TCGA 1 cut(s) 146
TseI GCWGC 1 cut(s) 89
XcmI CCANNNNNNNNNTGG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.