E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 615 |
| AciI | CCGC | 2 cut(s) | 599, 615 |
| AclWI | GGATC | 1 cut(s) | 538 |
| AcsI | RAATTY | 3 cut(s) | 330, 546, 659 |
| AfaI | GTAC | 1 cut(s) | 271 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 181 |
| AflIII | ACRYGT | 1 cut(s) | 277 |
| AgsI | TTSAA | 2 cut(s) | 415, 578 |
| AluBI | AGCT | 1 cut(s) | 502 |
| AluI | AGCT | 1 cut(s) | 502 |
| Alw26I | GTCTC | 1 cut(s) | 33 |
| AlwI | GGATC | 1 cut(s) | 538 |
| ApoI | RAATTY | 3 cut(s) | 330, 546, 659 |
| AsuC2I | CCSGG | 1 cut(s) | 468 |
| AsuHPI | GGTGA | 4 cut(s) | 299, 401, 550, 629 |
| BbsI | GAAGAC | 2 cut(s) | 297, 365 |
| BccI | CCATC | 1 cut(s) | 79 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 189, 223 |
| BciVI | GTATCC | 1 cut(s) | 588 |
| BcnI | CCSGG | 1 cut(s) | 468 |
| BcoDI | GTCTC | 1 cut(s) | 33 |
| BfaI | CTAG | 1 cut(s) | 327 |
| BfmI | CTRYAG | 1 cut(s) | 108 |
| BfuI | GTATCC | 1 cut(s) | 588 |
| BlpI | GCTNAGC | 1 cut(s) | 498 |
| BmcAI | AGTACT | 1 cut(s) | 271 |
| Bme1390I | CCNGG | 1 cut(s) | 468 |
| BmiI | GGNNCC | 1 cut(s) | 465 |
| BmrFI | CCNGG | 1 cut(s) | 468 |
| BmsI | GCATC | 4 cut(s) | 65, 113, 580, 621 |
| BpiI | GAAGAC | 2 cut(s) | 297, 365 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 498 |
| BpuEI | CTTGAG | 1 cut(s) | 19 |
| BpuMI | CCSGG | 1 cut(s) | 468 |
| BsaAI | YACGTR | 3 cut(s) | 156, 232, 476 |
| BsaI | GGTCTC | 1 cut(s) | 33 |
| BsaJI | CCNNGG | 1 cut(s) | 346 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 181 |
| Bse1I | ACTGG | 2 cut(s) | 307, 629 |
| Bse3DI | GCAATG | 1 cut(s) | 642 |
| BseDI | CCNNGG | 1 cut(s) | 346 |
| BseGI | GGATG | 1 cut(s) | 297 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 181 |
| BseMI | GCAATG | 1 cut(s) | 642 |
| BseNI | ACTGG | 2 cut(s) | 307, 629 |
| BsgI | GTGCAG | 1 cut(s) | 258 |
| BsiSI | CCGG | 1 cut(s) | 467 |
| BslFI | GGGAC | 1 cut(s) | 98 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 181 |
| BsmAI | GTCTC | 1 cut(s) | 33 |
| BsmFI | GGGAC | 1 cut(s) | 98 |
| Bso31I | GGTCTC | 1 cut(s) | 33 |
| Bsp143I | GATC | 1 cut(s) | 530 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 498 |
| BspACI | CCGC | 2 cut(s) | 599, 615 |
| BspLI | GGNNCC | 1 cut(s) | 465 |
| BspPI | GGATC | 1 cut(s) | 538 |
| BspTNI | GGTCTC | 1 cut(s) | 33 |
| BsrBI | CCGCTC | 1 cut(s) | 615 |
| BsrDI | GCAATG | 1 cut(s) | 642 |
| BsrI | ACTGG | 2 cut(s) | 307, 629 |
| BssECI | CCNNGG | 1 cut(s) | 346 |
| BssMI | GATC | 1 cut(s) | 530 |
| BssT1I | CCWWGG | 1 cut(s) | 346 |
| Bst4CI | ACNGT | 4 cut(s) | 323, 364, 442, 449 |
| Bst6I | CTCTTC | 1 cut(s) | 372 |
| BstBAI | YACGTR | 3 cut(s) | 156, 232, 476 |
| BstDEI | CTNAG | 2 cut(s) | 498, 521 |
| BstEII | GGTNACC | 1 cut(s) | 617 |
| BstF5I | GGATG | 1 cut(s) | 297 |
| BstKTI | GATC | 1 cut(s) | 533 |
| BstMAI | GTCTC | 1 cut(s) | 33 |
| BstMBI | GATC | 1 cut(s) | 530 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 461 |
| BstPI | GGTNACC | 1 cut(s) | 617 |
| BstSCI | CCNGG | 1 cut(s) | 466 |
| BstSFI | CTRYAG | 1 cut(s) | 108 |
| BstV2I | GAAGAC | 2 cut(s) | 297, 365 |
| BsuI | GTATCC | 1 cut(s) | 588 |
| BtgZI | GCGATG | 1 cut(s) | 98 |
| BtsCI | GGATG | 1 cut(s) | 297 |
| BtsIMutI | CAGTG | 1 cut(s) | 622 |
| Csp6I | GTAC | 1 cut(s) | 270 |
| CviAII | CATG | 4 cut(s) | 176, 260, 340, 486 |
| CviJI | RGCY | 6 cut(s) | 174, 258, 410, 464, 497, 502 |
| CviKI_1 | RGCY | 6 cut(s) | 174, 258, 410, 464, 497, 502 |
| CviQI | GTAC | 1 cut(s) | 270 |
| DdeI | CTNAG | 2 cut(s) | 498, 521 |
| DpnI | GATC | 1 cut(s) | 532 |
| DpnII | GATC | 1 cut(s) | 530 |
| Eam1104I | CTCTTC | 1 cut(s) | 372 |
| EarI | CTCTTC | 1 cut(s) | 372 |
| Eco130I | CCWWGG | 1 cut(s) | 346 |
| Eco31I | GGTCTC | 1 cut(s) | 33 |
| Eco91I | GGTNACC | 1 cut(s) | 617 |
| EcoO65I | GGTNACC | 1 cut(s) | 617 |
| EcoT14I | CCWWGG | 1 cut(s) | 346 |
| EcoT22I | ATGCAT | 1 cut(s) | 573 |
| ErhI | CCWWGG | 1 cut(s) | 346 |
| FaeI | CATG | 4 cut(s) | 179, 263, 343, 489 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 247, 279 |
| FaqI | GGGAC | 1 cut(s) | 98 |
| FatI | CATG | 4 cut(s) | 175, 259, 339, 485 |
| FauNDI | CATATG | 1 cut(s) | 459 |
| FokI | GGATG | 1 cut(s) | 284 |
| FspBI | CTAG | 1 cut(s) | 327 |
| HapII | CCGG | 1 cut(s) | 467 |
| Hin1II | CATG | 4 cut(s) | 179, 263, 343, 489 |
| HincII | GTYRAC | 1 cut(s) | 445 |
| HindII | GTYRAC | 1 cut(s) | 445 |
| HinfI | GANTC | 1 cut(s) | 247 |
| HpaII | CCGG | 1 cut(s) | 467 |
| HphI | GGTGA | 4 cut(s) | 299, 401, 550, 629 |
| Hpy166II | GTNNAC | 2 cut(s) | 28, 445 |
| Hpy188I | TCNGA | 4 cut(s) | 53, 200, 552, 674 |
| Hpy188III | TCNNGA | 3 cut(s) | 7, 36, 575 |
| Hpy8I | GTNNAC | 2 cut(s) | 28, 445 |
| HpyAV | CCTTC | 3 cut(s) | 85, 175, 419 |
| HpyCH4III | ACNGT | 4 cut(s) | 323, 364, 442, 449 |
| HpyCH4IV | ACGT | 4 cut(s) | 155, 231, 279, 475 |
| HpyCH4V | TGCA | 8 cut(s) | 78, 189, 225, 275, 455, 571, 634, 642 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 461 |
| HpyF3I | CTNAG | 2 cut(s) | 498, 521 |
| HpySE526I | ACGT | 4 cut(s) | 155, 231, 279, 475 |
| Hsp92II | CATG | 4 cut(s) | 179, 263, 343, 489 |
| Kzo9I | GATC | 1 cut(s) | 530 |
| LmnI | GCTCC | 1 cut(s) | 469 |
| LpnPI | CCDG | 5 cut(s) | 225, 320, 392, 480, 610 |
| LweI | GCATC | 4 cut(s) | 65, 113, 580, 621 |
| MaeI | CTAG | 1 cut(s) | 327 |
| MaeII | ACGT | 4 cut(s) | 155, 231, 279, 475 |
| MaeIII | GTNAC | 4 cut(s) | 56, 436, 476, 617 |
| MalI | GATC | 1 cut(s) | 532 |
| MbiI | CCGCTC | 1 cut(s) | 615 |
| MboI | GATC | 1 cut(s) | 530 |
| MboII | GAAGA | 7 cut(s) | 302, 367, 370, 389, 553, 590, 640 |
| MluCI | AATT | 3 cut(s) | 330, 546, 659 |
| MnlI | CCTC | 1 cut(s) | 379 |
| Mph1103I | ATGCAT | 1 cut(s) | 573 |
| MseI | TTAA | 2 cut(s) | 336, 372 |
| MspI | CCGG | 1 cut(s) | 467 |
| MspR9I | CCNGG | 1 cut(s) | 468 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 461 |
| NciI | CCSGG | 1 cut(s) | 468 |
| NdeI | CATATG | 1 cut(s) | 459 |
| NdeII | GATC | 1 cut(s) | 530 |
| NlaIII | CATG | 4 cut(s) | 179, 263, 343, 489 |
| NlaIV | GGNNCC | 1 cut(s) | 465 |
| NmuCI | GTSAC | 3 cut(s) | 436, 476, 617 |
| NsiI | ATGCAT | 1 cut(s) | 573 |
| PfeI | GAWTC | 1 cut(s) | 247 |
| PfoI | TCCNGGA | 1 cut(s) | 466 |
| Ppu21I | YACGTR | 3 cut(s) | 156, 232, 476 |
| PspEI | GGTNACC | 1 cut(s) | 617 |
| PspN4I | GGNNCC | 1 cut(s) | 465 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 212, 244 |
| RsaI | GTAC | 1 cut(s) | 271 |
| RsaNI | GTAC | 1 cut(s) | 270 |
| SaqAI | TTAA | 2 cut(s) | 336, 372 |
| Sau3AI | GATC | 1 cut(s) | 530 |
| ScaI | AGTACT | 1 cut(s) | 271 |
| ScrFI | CCNGG | 1 cut(s) | 468 |
| SetI | ASST | 9 cut(s) | 96, 158, 186, 234, 282, 348, 430, 478, 504 |
| SfaNI | GCATC | 4 cut(s) | 65, 113, 580, 621 |
| SfcI | CTRYAG | 1 cut(s) | 108 |
| SmlI | CTYRAG | 1 cut(s) | 34 |
| SmoI | CTYRAG | 1 cut(s) | 34 |
| Sse9I | AATT | 3 cut(s) | 330, 546, 659 |
| SsiI | CCGC | 2 cut(s) | 599, 615 |
| SspMI | CTAG | 1 cut(s) | 327 |
| StyD4I | CCNGG | 1 cut(s) | 466 |
| StyI | CCWWGG | 1 cut(s) | 346 |
| TaaI | ACNGT | 4 cut(s) | 323, 364, 442, 449 |
| TaiI | ACGT | 4 cut(s) | 158, 234, 282, 478 |
| TaqI | TCGA | 4 cut(s) | 8, 99, 218, 245 |
| TasI | AATT | 3 cut(s) | 330, 546, 659 |
| TatI | WGTACW | 1 cut(s) | 269 |
| TfiI | GAWTC | 1 cut(s) | 247 |
| Tru1I | TTAA | 2 cut(s) | 336, 372 |
| Tru9I | TTAA | 2 cut(s) | 336, 372 |
| TscAI | CASTG | 1 cut(s) | 629 |
| TseFI | GTSAC | 3 cut(s) | 436, 476, 617 |
| Tsp45I | GTSAC | 3 cut(s) | 436, 476, 617 |
| TspDTI | ATGAA | 2 cut(s) | 228, 356 |
| TspRI | CASTG | 1 cut(s) | 629 |
| XapI | RAATTY | 3 cut(s) | 330, 546, 659 |
| XspI | CTAG | 1 cut(s) | 327 |
| ZrmI | AGTACT | 1 cut(s) | 271 |
| Zsp2I | ATGCAT | 1 cut(s) | 573 |