E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 56 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 312 |
| AcsI | RAATTY | 1 cut(s) | 252 |
| AcuI | CTGAAG | 1 cut(s) | 189 |
| AfaI | GTAC | 1 cut(s) | 43 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 312 |
| AgsI | TTSAA | 3 cut(s) | 17, 244, 266 |
| AhlI | ACTAGT | 1 cut(s) | 38 |
| AjnI | CCWGG | 1 cut(s) | 70 |
| AluBI | AGCT | 1 cut(s) | 209 |
| AluI | AGCT | 1 cut(s) | 209 |
| Alw26I | GTCTC | 1 cut(s) | 339 |
| ApeKI | GCWGC | 1 cut(s) | 281 |
| ApoI | RAATTY | 1 cut(s) | 252 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 277, 309 |
| BbvI | GCAGC | 1 cut(s) | 268 |
| BccI | CCATC | 2 cut(s) | 139, 308 |
| BceAI | ACGGC | 1 cut(s) | 81 |
| BciT130I | CCWGG | 1 cut(s) | 72 |
| BcoDI | GTCTC | 1 cut(s) | 339 |
| BcuI | ACTAGT | 1 cut(s) | 38 |
| BfaI | CTAG | 1 cut(s) | 39 |
| BisI | GCNGC | 1 cut(s) | 282 |
| BlsI | GCNGC | 1 cut(s) | 283 |
| BmcAI | AGTACT | 1 cut(s) | 43 |
| Bme1390I | CCNGG | 1 cut(s) | 72 |
| BmrFI | CCNGG | 1 cut(s) | 72 |
| BmsI | GCATC | 1 cut(s) | 139 |
| BpmI | CTGGAG | 1 cut(s) | 195 |
| BsaI | GGTCTC | 1 cut(s) | 339 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 312 |
| Bse1I | ACTGG | 1 cut(s) | 212 |
| BseBI | CCWGG | 1 cut(s) | 72 |
| BseGI | GGATG | 1 cut(s) | 154 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 312 |
| BseNI | ACTGG | 1 cut(s) | 212 |
| BseXI | GCAGC | 1 cut(s) | 268 |
| BsgI | GTGCAG | 1 cut(s) | 183 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 312 |
| BsmAI | GTCTC | 1 cut(s) | 339 |
| BsmI | GAATGC | 1 cut(s) | 283 |
| Bso31I | GGTCTC | 1 cut(s) | 339 |
| BspTNI | GGTCTC | 1 cut(s) | 339 |
| BsrI | ACTGG | 1 cut(s) | 212 |
| Bst2UI | CCWGG | 1 cut(s) | 72 |
| BstF5I | GGATG | 1 cut(s) | 154 |
| BstMAI | GTCTC | 1 cut(s) | 339 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 158, 206 |
| BstNI | CCWGG | 1 cut(s) | 72 |
| BstSCI | CCNGG | 1 cut(s) | 70 |
| BstV1I | GCAGC | 1 cut(s) | 268 |
| BtsCI | GGATG | 1 cut(s) | 154 |
| Csp6I | GTAC | 1 cut(s) | 42 |
| CviAII | CATG | 3 cut(s) | 191, 307, 312 |
| CviJI | RGCY | 1 cut(s) | 209 |
| CviKI_1 | RGCY | 1 cut(s) | 209 |
| CviQI | GTAC | 1 cut(s) | 42 |
| Eco31I | GGTCTC | 1 cut(s) | 339 |
| Eco57I | CTGAAG | 1 cut(s) | 189 |
| EcoRI | GAATTC | 1 cut(s) | 252 |
| EcoRII | CCWGG | 1 cut(s) | 70 |
| FaeI | CATG | 3 cut(s) | 194, 310, 315 |
| FaiI | YATR | 5 cut(s) | 56, 159, 192, 308, 313 |
| FatI | CATG | 3 cut(s) | 190, 306, 311 |
| Fnu4HI | GCNGC | 1 cut(s) | 282 |
| FokI | GGATG | 1 cut(s) | 161 |
| Fsp4HI | GCNGC | 1 cut(s) | 282 |
| FspBI | CTAG | 1 cut(s) | 39 |
| GluI | GCNGC | 1 cut(s) | 282 |
| GsuI | CTGGAG | 1 cut(s) | 195 |
| Hin1II | CATG | 3 cut(s) | 194, 310, 315 |
| HincII | GTYRAC | 1 cut(s) | 101 |
| HindII | GTYRAC | 1 cut(s) | 101 |
| HinfI | GANTC | 2 cut(s) | 17, 230 |
| Hpy166II | GTNNAC | 1 cut(s) | 101 |
| Hpy188III | TCNNGA | 2 cut(s) | 14, 244 |
| Hpy8I | GTNNAC | 1 cut(s) | 101 |
| HpyAV | CCTTC | 3 cut(s) | 197, 213, 260 |
| HpyCH4V | TGCA | 2 cut(s) | 47, 200 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 158, 206 |
| Hsp92II | CATG | 3 cut(s) | 194, 310, 315 |
| LmnI | GCTCC | 1 cut(s) | 214 |
| LpnPI | CCDG | 4 cut(s) | 57, 84, 210, 225 |
| Lsp1109I | GCAGC | 1 cut(s) | 268 |
| LweI | GCATC | 1 cut(s) | 139 |
| MaeI | CTAG | 1 cut(s) | 39 |
| MaeIII | GTNAC | 1 cut(s) | 128 |
| MboII | GAAGA | 1 cut(s) | 232 |
| MluCI | AATT | 4 cut(s) | 21, 90, 252, 327 |
| MslI | CAYNNNNRTG | 1 cut(s) | 305 |
| MspR9I | CCNGG | 1 cut(s) | 72 |
| Mva1269I | GAATGC | 1 cut(s) | 283 |
| MvaI | CCWGG | 1 cut(s) | 72 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 158, 206 |
| NlaIII | CATG | 3 cut(s) | 194, 310, 315 |
| NmeAIII | GCCGAG | 1 cut(s) | 187 |
| NmuCI | GTSAC | 1 cut(s) | 128 |
| PctI | GAATGC | 1 cut(s) | 283 |
| PfeI | GAWTC | 2 cut(s) | 17, 230 |
| PflFI | GACNNNGTC | 1 cut(s) | 313 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 312 |
| PkrI | GCNGC | 1 cut(s) | 283 |
| PsiI | TTATAA | 1 cut(s) | 56 |
| Psp6I | CCWGG | 1 cut(s) | 70 |
| PspGI | CCWGG | 1 cut(s) | 70 |
| PsyI | GACNNNGTC | 1 cut(s) | 313 |
| RsaI | GTAC | 1 cut(s) | 43 |
| RsaNI | GTAC | 1 cut(s) | 42 |
| RseI | CAYNNNNRTG | 1 cut(s) | 305 |
| SatI | GCNGC | 1 cut(s) | 282 |
| ScaI | AGTACT | 1 cut(s) | 43 |
| ScrFI | CCNGG | 1 cut(s) | 72 |
| SetI | ASST | 3 cut(s) | 12, 205, 211 |
| SfaNI | GCATC | 1 cut(s) | 139 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 305 |
| SpeI | ACTAGT | 1 cut(s) | 38 |
| Sse9I | AATT | 4 cut(s) | 21, 90, 252, 327 |
| SspMI | CTAG | 1 cut(s) | 39 |
| StyD4I | CCNGG | 1 cut(s) | 70 |
| TaqI | TCGA | 1 cut(s) | 216 |
| TasI | AATT | 4 cut(s) | 21, 90, 252, 327 |
| TatI | WGTACW | 1 cut(s) | 41 |
| TfiI | GAWTC | 2 cut(s) | 17, 230 |
| TseFI | GTSAC | 1 cut(s) | 128 |
| TseI | GCWGC | 1 cut(s) | 281 |
| Tsp45I | GTSAC | 1 cut(s) | 128 |
| TspDTI | ATGAA | 1 cut(s) | 179 |
| TspGWI | ACGGA | 1 cut(s) | 289 |
| Tth111I | GACNNNGTC | 1 cut(s) | 313 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 312 |
| XapI | RAATTY | 1 cut(s) | 252 |
| XspI | CTAG | 1 cut(s) | 39 |
| ZrmI | AGTACT | 1 cut(s) | 43 |