Rroxscaffold_7G00211430

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
61859415 .. 61860683
1269 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00211430.1

Sequence Viewer

Length: 1269 bp
ATGGAGAGACGTCTGAATCAGCCTCTGAGATCAAAGAGGAAAATACATGACTCGGCCGACGAAGATGAACCTTTGATATTCAAGAGAAGTAGGTTTGCTTCTGCTATAAACTCCAGATCCATCGGTGCAACGGAACACCAAGAACAACTGCAAGAGCCAGAGGATGGAGCAGATCGACAAAGTGACAAGCAAGAAGAGGAAGGAGAAGAAGACCCGGAAAGTGAAGAACTAGAAGAAGACCAACAAAATGAAGAGCAAGAAGAGGACGGAGAAGAAGATCAGGAAAGTGAAGAACTAGAAGAAGACAAACAAAATGAAGAGCAAGAAGAGGACGGAGAAGAAGATCAGGAAAGTGAAGAACTAGAAGAAGACCAACAAAATGAAGAGCAAGAAGAGGACGGAGAAGAAAATCAGGAAAGTGATGAAGAACTAGATGAACCTGAAAATGAAGGAGAAGATGGATACGAAGGACCGTACAACGAACCATCCAATGCTGCTGACCGAGAGGGTCATGGTTCAAATATTGTGGTAATCCTAACTGAGCCAGCTTTGCTCGATTGCCCTATATGCTTTGAGCCCTTGACCATCCCTGTCTTCCAGTGTGATCAAAATGGTCACATTTCTTGCTCCACCTGCTGCACCAAAATGAACAACAAGTGCCCTTCTTGTTCCTGCCCTATTGGATCCAATCGTTGCCGAGCCGTCGAGAAAATTGTGGAATCAATTGCAACTCCATGCCAAAACATCAAGTACGGCTGCAACACTCGAGTGATTTACAATAAGAAAATTGAACATGAAAAGACATGTCTCTATTTGCCTTGTTCATGCCCCTATTTTGGCTGCACGTTTGTCTCATCGGCTAAAGAGTTATACAAACATTACAGCAATAATCATGTGTATTTTGCAACGGAGTTCGTGTGCGACGACGATTTTCGCAGTTTCTCTATTACATTAACCAAGTTGGACAGATTTATTGTTCTTCGAGAAAAGAATGATGGGAGGTTATTTGTCCTTTACAACGATCCTGTCGTTCTGGGGAATTTGGTGACTCTTAGCTGTATTCAGCCCAGCTTCATGGAGGGTTTCAACTACTATCTTGTAGTTAAACACGAGGACACTACTCTGAAATTAAGGTCTCTAACGAAAAGCACACAAGGGCAGAAAAATTATAGCCCTCCTAATTCATCCAGTTCGCTTTTAATCCCGCATGACTTTTTCGATTCTTGGGATGACCAGCTCGAGATGGAAATCTGTATATGGCGTAAGTAA

Protein Analysis

422

Amino Acids

48.58

Weight (kDa)

4.29

Isoelectric Point (pI)

76.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sina_RING PF21362 187 - 223 8.8e-09 E3 ubiquitin-protein ligase sina/sinah, RING finger
Sina_ZnF PF21361 237 - 298 2.1e-12 Sina, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000395)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66610 AT1G66610 AT1G66620 AT1G66630 AT1G66650 AT1G66660 AT1G66660 AT5G37870 AT5G37890 AT5G37900 AT5G37910 AT5G37930 AT5G62800 AT5G62800
fragaria_vesca FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_2g03850 FvH4_2g04470 FvH4_2g04471
malus_domestica MD09G1260200.v1.1 MD09G1260400.v1.1 MD10G1106400.v1.1
prunus_persica Prupe.3G152000_v2.0.a1 Prupe.3G152100_v2.0.a1 Prupe.3G152100_v2.0.a1 Prupe.3G152100_v2.0.a1 Prupe.8G145400_v2.0.a1 Prupe.8G145500_v2.0.a1
pyrus_communis pycom09g17480 pycom09g17490 pycom10g09160
rosa_chinensis RchiOBHm_Chr2g0111691 RchiOBHm_Chr3g0448681 RchiOBHm_Chr3g0493571 RchiOBHm_Chr6g0252861 RchiOBHm_Chr6g0252871 RchiOBHm_Chr6g0253841 RchiOBHm_Chr6g0253921 RchiOBHm_Chr6g0253941
rosa_laevigata RLG00000007595 RLG00000014953 RLG00000014955 RLG00000014957 RLG00000014958 RLG00000015058 RLG00000017917 RLG00000022703
rosa_multiflora Rmu_sc0000829.1_g000012 Rmu_sc0000829.1_g000015 Rmu_sc0000829.1_g000016 Rmu_sc0000927.1_g000006 Rmu_sc0001716.1_g000004 Rmu_sc0003921.1_g000007
rosa_roxburghii Rroxscaffold_4G00307570 Rroxscaffold_6G00391470 Rroxscaffold_6G00426970 Rroxscaffold_7G00211390 Rroxscaffold_7G00211420 Rroxscaffold_7G00211430 Rroxscaffold_7G00212350 Rroxscaffold_7G00212370
rosa_rugosa Rorug02G0175400 Rorug02G0615300 Rorug03G0262600 Rorug03G0262700 Rorug05G0539200 Rorug05G0539400 Rorug05G0548300 Rorug05G0548400 Rorug05G0548500 Rorug05G0548600
rosa_samantha Rh2BG240600 Rh3AG014100 Rh3AG311400 Rh3BG013900 Rh3BG347300 Rh3CG345400 Rh3DG347600 Rh6AG055200 Rh6AG063900 Rh6AG064600 Rh6AG064800 Rh6BG049400 Rh6BG049500 Rh6BG057700 Rh6BG058000 Rh6CG048200 Rh6CG048300 Rh6CG057600 Rh6CG057900 Rh6DG043800 Rh6DG043900
rosa_wichuraiana Rw2G017640 Rw6G005000 Rw6G005670 Rw6G005710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 641
AatII GACGTC 1 cut(s) 13
Acc36I ACCTGC 1 cut(s) 641
AccB7I CCANNNNNTGG 1 cut(s) 164
AciI CCGC 1 cut(s) 1205
AclWI GGATC 4 cut(s) 111, 678, 691, 1016
AcoI YGGCCR 1 cut(s) 54
AcsI RAATTY 1 cut(s) 1039
AcyI GRCGYC 1 cut(s) 10
AfaI GTAC 2 cut(s) 476, 752
AfiI CCNNNNNNNGG 2 cut(s) 164, 836
AflIII ACRYGT 1 cut(s) 803
AgsI TTSAA 4 cut(s) 82, 519, 791, 1087
AleI CACNNNNGTG 1 cut(s) 767
AluBI AGCT 4 cut(s) 548, 1056, 1071, 1237
AluI AGCT 4 cut(s) 548, 1056, 1071, 1237
Alw26I GTCTC 3 cut(s) 812, 856, 1140
AlwI GGATC 4 cut(s) 111, 678, 691, 1016
AlwNI CAGNNNCTG 1 cut(s) 25
Ama87I CYCGRG 2 cut(s) 765, 1238
AoxI GGCC 1 cut(s) 54
ApeKI GCWGC 4 cut(s) 494, 636, 756, 840
ApoI RAATTY 1 cut(s) 1039
AspS9I GGNCC 1 cut(s) 470
AsuC2I CCSGG 1 cut(s) 215
AsuHPI GGTGA 1 cut(s) 1057
AvaI CYCGRG 2 cut(s) 765, 1238
AvaII GGWCC 1 cut(s) 470
BaeGI GKGCMC 1 cut(s) 662
BamHI GGATCC 1 cut(s) 683
BanII GRGCYC 1 cut(s) 579
BarI GAAGNNNNNNTAC 2 cut(s) 82, 114
BauI CACGAG 1 cut(s) 1109
BbsI GAAGAC 5 cut(s) 216, 243, 309, 375, 586
BbvI GCAGC 4 cut(s) 481, 623, 743, 827
BccI CCATC 7 cut(s) 128, 158, 452, 493, 593, 989, 1237
BceAI ACGGC 2 cut(s) 686, 769
BciVI GTATCC 1 cut(s) 455
BclI TGATCA 1 cut(s) 604
BcnI CCSGG 1 cut(s) 215
BcoDI GTCTC 3 cut(s) 812, 856, 1140
BfaI CTAG 4 cut(s) 230, 296, 362, 431
BfuAI ACCTGC 1 cut(s) 641
BfuI GTATCC 1 cut(s) 455
BisI GCNGC 4 cut(s) 495, 637, 757, 841
BlsI GCNGC 4 cut(s) 496, 638, 758, 842
Bme1390I CCNGG 1 cut(s) 215
Bme18I GGWCC 1 cut(s) 470
BmeT110I CYCGRG 2 cut(s) 765, 1238
BmgT120I GGNCC 1 cut(s) 470
BmiI GGNNCC 1 cut(s) 685
BmrFI CCNGG 1 cut(s) 215
BpiI GAAGAC 5 cut(s) 216, 243, 309, 375, 586
BpmI CTGGAG 1 cut(s) 97
BpuMI CCSGG 1 cut(s) 215
BsaBI GATNNNNATC 1 cut(s) 1247
BsaHI GRCGYC 1 cut(s) 10
BsaI GGTCTC 1 cut(s) 1140
BsaXI ACNNNNNCTCC 2 cut(s) 902, 932
Bsc4I CCNNNNNNNGG 2 cut(s) 164, 836
Bse1I ACTGG 2 cut(s) 598, 1188
Bse8I GATNNNNATC 1 cut(s) 1247
BseGI GGATG 5 cut(s) 169, 485, 585, 1184, 1234
BseJI GATNNNNATC 1 cut(s) 1247
BseLI CCNNNNNNNGG 2 cut(s) 164, 836
BseMII CTCAG 2 cut(s) 17, 531
BseNI ACTGG 2 cut(s) 598, 1188
BseSI GKGCMC 1 cut(s) 662
BseX3I CGGCCG 1 cut(s) 54
BseXI GCAGC 4 cut(s) 481, 623, 743, 827
BseYI CCCAGC 1 cut(s) 1067
BsgI GTGCAG 2 cut(s) 622, 826
Bsh1285I CGRYCG 1 cut(s) 57
BshFI GGCC 1 cut(s) 56
BsiEI CGRYCG 1 cut(s) 57
BsiHKCI CYCGRG 2 cut(s) 765, 1238
BsiSI CCGG 1 cut(s) 215
BslI CCNNNNNNNGG 2 cut(s) 164, 836
BsmAI GTCTC 3 cut(s) 812, 856, 1140
BsnI GGCC 1 cut(s) 56
Bso31I GGTCTC 1 cut(s) 1140
BsoBI CYCGRG 2 cut(s) 765, 1238
Bsp1286I GDGCHC 2 cut(s) 579, 662
Bsp143I GATC 8 cut(s) 29, 116, 172, 277, 343, 604, 683, 1021
BspACI CCGC 1 cut(s) 1205
BspANI GGCC 1 cut(s) 56
BspCNI CTCAG 2 cut(s) 18, 532
BspLI GGNNCC 1 cut(s) 685
BspMI ACCTGC 1 cut(s) 641
BspPI GGATC 4 cut(s) 111, 678, 691, 1016
BspQI GCTCTTC 3 cut(s) 246, 312, 378
BspTNI GGTCTC 1 cut(s) 1140
BsrI ACTGG 2 cut(s) 598, 1188
BssMI GATC 8 cut(s) 29, 116, 172, 277, 343, 604, 683, 1021
BssNI GRCGYC 1 cut(s) 10
BssSI CACGAG 1 cut(s) 1109
Bst2BI CACGAG 1 cut(s) 1109
Bst4CI ACNGT 1 cut(s) 474
Bst6I CTCTTC 7 cut(s) 189, 246, 255, 312, 321, 378, 387
BstACI GRCGYC 1 cut(s) 10
BstC8I GCNNGC 1 cut(s) 546
BstDEI CTNAG 3 cut(s) 26, 540, 1052
BstF5I GGATG 5 cut(s) 169, 485, 585, 1184, 1234
BstKTI GATC 8 cut(s) 32, 119, 175, 280, 346, 607, 686, 1024
BstMAI GTCTC 3 cut(s) 812, 856, 1140
BstMBI GATC 8 cut(s) 29, 116, 172, 277, 343, 604, 683, 1021
BstMCI CGRYCG 1 cut(s) 57
BstMWI GCNNNNNNNGC 3 cut(s) 550, 567, 633
BstNSI RCATGY 1 cut(s) 807
BstSCI CCNGG 1 cut(s) 213
BstSLI GKGCMC 1 cut(s) 662
BstV1I GCAGC 4 cut(s) 481, 623, 743, 827
BstV2I GAAGAC 5 cut(s) 216, 243, 309, 375, 586
BstX2I RGATCY 2 cut(s) 116, 683
BstXI CCANNNNNNTGG 1 cut(s) 1075
BstYI RGATCY 2 cut(s) 116, 683
BstZI CGGCCG 1 cut(s) 54
BsuI GTATCC 1 cut(s) 455
BsuRI GGCC 1 cut(s) 56
BtsCI GGATG 5 cut(s) 169, 485, 585, 1184, 1234
BtsIMutI CAGTG 1 cut(s) 605
BveI ACCTGC 1 cut(s) 641
Cac8I GCNNGC 1 cut(s) 546
CaiI CAGNNNCTG 1 cut(s) 25
Cfr13I GGNCC 1 cut(s) 470
Csp6I GTAC 2 cut(s) 475, 751
CspCI CAANNNNNGTGG 2 cut(s) 507, 542
CviAII CATG 9 cut(s) 47, 512, 735, 794, 804, 825, 893, 1075, 1208
CviQI GTAC 2 cut(s) 475, 751
DdeI CTNAG 3 cut(s) 26, 540, 1052
DpnI GATC 8 cut(s) 31, 118, 174, 279, 345, 606, 685, 1023
DpnII GATC 8 cut(s) 29, 116, 172, 277, 343, 604, 683, 1021
EaeI YGGCCR 1 cut(s) 54
EagI CGGCCG 1 cut(s) 54
Eam1104I CTCTTC 7 cut(s) 189, 246, 255, 312, 321, 378, 387
EarI CTCTTC 7 cut(s) 189, 246, 255, 312, 321, 378, 387
EclXI CGGCCG 1 cut(s) 54
Eco24I GRGCYC 1 cut(s) 579
Eco31I GGTCTC 1 cut(s) 1140
Eco47I GGWCC 1 cut(s) 470
Eco52I CGGCCG 1 cut(s) 54
Eco88I CYCGRG 2 cut(s) 765, 1238
EcoT38I GRGCYC 1 cut(s) 579
FaeI CATG 9 cut(s) 50, 515, 738, 797, 807, 828, 896, 1078, 1211
FatI CATG 9 cut(s) 46, 511, 734, 793, 803, 824, 892, 1074, 1207
FauI CCCGC 1 cut(s) 1212
FbaI TGATCA 1 cut(s) 604
Fnu4HI GCNGC 4 cut(s) 495, 637, 757, 841
FokI GGATG 5 cut(s) 176, 472, 572, 1171, 1241
FriOI GRGCYC 1 cut(s) 579
Fsp4HI GCNGC 4 cut(s) 495, 637, 757, 841
FspBI CTAG 4 cut(s) 230, 296, 362, 431
GluI GCNGC 4 cut(s) 495, 637, 757, 841
GsaI CCCAGC 1 cut(s) 1071
GsuI CTGGAG 1 cut(s) 97
HaeIII GGCC 1 cut(s) 56
HapII CCGG 1 cut(s) 215
Hin1I GRCGYC 1 cut(s) 10
Hin1II CATG 9 cut(s) 50, 515, 738, 797, 807, 828, 896, 1078, 1211
HinfI GANTC 5 cut(s) 16, 50, 719, 1048, 1220
HpaII CCGG 1 cut(s) 215
HphI GGTGA 1 cut(s) 1057
Hpy188I TCNGA 3 cut(s) 15, 27, 1125
Hpy188III TCNNGA 8 cut(s) 82, 114, 281, 347, 413, 706, 983, 1240
Hpy99I CGWCG 4 cut(s) 62, 707, 926, 929
HpyAV CCTTC 4 cut(s) 194, 443, 461, 672
HpyCH4III ACNGT 1 cut(s) 474
HpyCH4IV ACGT 2 cut(s) 10, 845
HpyCH4V TGCA 7 cut(s) 128, 151, 639, 728, 759, 843, 905
HpyF10VI GCNNNNNNNGC 3 cut(s) 550, 567, 633
HpyF3I CTNAG 3 cut(s) 26, 540, 1052
HpySE526I ACGT 2 cut(s) 10, 845
Hsp92I GRCGYC 1 cut(s) 10
Hsp92II CATG 9 cut(s) 50, 515, 738, 797, 807, 828, 896, 1078, 1211
Ksp22I TGATCA 1 cut(s) 604
Kzo9I GATC 8 cut(s) 29, 116, 172, 277, 343, 604, 683, 1021
LguI GCTCTTC 3 cut(s) 246, 312, 378
LmnI GCTCC 2 cut(s) 167, 632
Lsp1109I GCAGC 4 cut(s) 481, 623, 743, 827
MaeI CTAG 4 cut(s) 230, 296, 362, 431
MaeII ACGT 2 cut(s) 10, 845
MaeIII GTNAC 3 cut(s) 182, 614, 1045
MalI GATC 8 cut(s) 31, 118, 174, 279, 345, 606, 685, 1023
MboI GATC 8 cut(s) 29, 116, 172, 277, 343, 604, 683, 1021
MfeI CAATTG 1 cut(s) 723
MflI RGATCY 2 cut(s) 116, 683
MhlI GDGCHC 2 cut(s) 579, 662
MluCI AATT 7 cut(s) 711, 723, 786, 1039, 1127, 1165, 1180
MlyI GAGTC 2 cut(s) 44, 1042
MmeI TCCRAC 1 cut(s) 942
MseI TTAA 4 cut(s) 953, 1104, 1130, 1199
MslI CAYNNNNRTG 2 cut(s) 644, 767
MspI CCGG 1 cut(s) 215
MspR9I CCNGG 1 cut(s) 215
MunI CAATTG 1 cut(s) 723
MwoI GCNNNNNNNGC 3 cut(s) 550, 567, 633
NciI CCSGG 1 cut(s) 215
NdeII GATC 8 cut(s) 29, 116, 172, 277, 343, 604, 683, 1021
NlaIII CATG 9 cut(s) 50, 515, 738, 797, 807, 828, 896, 1078, 1211
NlaIV GGNNCC 1 cut(s) 685
NmeAIII GCCGAG 2 cut(s) 32, 722
NmuCI GTSAC 3 cut(s) 182, 614, 1045
NspI RCATGY 1 cut(s) 807
OliI CACNNNNGTG 1 cut(s) 767
PaeR7I CTCGAG 2 cut(s) 765, 1238
PaqCI CACCTGC 1 cut(s) 641
PciI ACATGT 1 cut(s) 803
PciSI GCTCTTC 3 cut(s) 246, 312, 378
PcsI WCGNNNNNNNCGW 2 cut(s) 921, 1026
PfeI GAWTC 3 cut(s) 16, 719, 1220
PflMI CCANNNNNTGG 1 cut(s) 164
PkrI GCNGC 4 cut(s) 496, 638, 758, 842
PleI GAGTC 2 cut(s) 44, 1042
PpsI GAGTC 2 cut(s) 44, 1042
PscI ACATGT 1 cut(s) 803
PspFI CCCAGC 1 cut(s) 1067
PspN4I GGNNCC 1 cut(s) 685
PspPI GGNCC 1 cut(s) 470
PspXI VCTCGAGB 1 cut(s) 765
PstNI CAGNNNCTG 1 cut(s) 25
PsuI RGATCY 2 cut(s) 116, 683
RsaI GTAC 2 cut(s) 476, 752
RsaNI GTAC 2 cut(s) 475, 751
RseI CAYNNNNRTG 2 cut(s) 644, 767
SapI GCTCTTC 3 cut(s) 246, 312, 378
SaqAI TTAA 4 cut(s) 953, 1104, 1130, 1199
SatI GCNGC 4 cut(s) 495, 637, 757, 841
Sau3AI GATC 8 cut(s) 29, 116, 172, 277, 343, 604, 683, 1021
Sau96I GGNCC 1 cut(s) 470
SchI GAGTC 2 cut(s) 44, 1042
ScrFI CCNGG 1 cut(s) 215
SduI GDGCHC 2 cut(s) 579, 662
Sfr274I CTCGAG 2 cut(s) 765, 1238
SinI GGWCC 1 cut(s) 470
SlaI CTCGAG 2 cut(s) 765, 1238
SmiMI CAYNNNNRTG 2 cut(s) 644, 767
SmlI CTYRAG 2 cut(s) 765, 1238
SmoI CTYRAG 2 cut(s) 765, 1238
Sse9I AATT 7 cut(s) 711, 723, 786, 1039, 1127, 1165, 1180
SsiI CCGC 1 cut(s) 1205
SspI AATATT 1 cut(s) 523
SspMI CTAG 4 cut(s) 230, 296, 362, 431
StyD4I CCNGG 1 cut(s) 213
TaaI ACNGT 1 cut(s) 474
TaiI ACGT 2 cut(s) 13, 848
TaqI TCGA 7 cut(s) 175, 555, 705, 766, 982, 1218, 1239
TaqII GACCGA 1 cut(s) 516
TasI AATT 7 cut(s) 711, 723, 786, 1039, 1127, 1165, 1180
TfiI GAWTC 3 cut(s) 16, 719, 1220
Tru1I TTAA 4 cut(s) 953, 1104, 1130, 1199
Tru9I TTAA 4 cut(s) 953, 1104, 1130, 1199
TscAI CASTG 1 cut(s) 605
TseFI GTSAC 3 cut(s) 182, 614, 1045
TseI GCWGC 4 cut(s) 494, 636, 756, 840
Tsp45I GTSAC 3 cut(s) 182, 614, 1045
TspGWI ACGGA 5 cut(s) 146, 282, 348, 414, 923
TspRI CASTG 1 cut(s) 605
Van91I CCANNNNNTGG 1 cut(s) 164
VpaK11BI GGWCC 1 cut(s) 470
XapI RAATTY 1 cut(s) 1039
XceI RCATGY 1 cut(s) 807
XhoI CTCGAG 2 cut(s) 765, 1238
XspI CTAG 4 cut(s) 230, 296, 362, 431
ZraI GACGTC 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.