Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000395

Physical Location & Seq

Genomic Coordinates Reverse (-)

25415737 .. 25416642

Gene Structure 906 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0262600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGCGCGCACTGATGGTGAAATCACAGTAGAAGAGCCAAATGGGGAGGAGGCAGTGGTGATTGACATTCACCATGTAGCTGATATGCGAAGGCGTCTAGCGGTAGCGGAAAACGCATTCGCAACTCCTAGTGAGGTCTACGGTGGCTCAAGATCAAGAGTTCCTCAAAACCTCATCGATATCAGCCCTTTAGCGATCGCTCCTGAAATGATCTCGATCGGACCTTTTTACCACGGAAATGAGTTACTGGAATTTCAAAGCAAATGGTGGTTTCTTAATCGACTCCTCTGTCGAACAAAGAGATCTGGTGGGCCTGATCGTCTAGAAGATTTGTTTGAAGCCGTGCAAAAATTGGAGAAAAAAGCGAGAGAATTCTATGAGGAGGACGTCCTCATGTCAAGCCCGGAGTTTATCGAAATAATGGTGCTTGATGGGTGCTATATCATTGAGCTGTTTCGACATCTTGGTAGAAATGAAGATGTTTACGATGATCCTATCTTTACACAGCCATGGTTGATTCCAATTATCACAAGCGACCTCCTCAAGCTTGAAAACCAACTCCCTTTCTTCGTCCTTGAAGAATTGTTCATACTTACTGCCCCTGCTAAGGATCATGGGGATCCTCTAGCTTTACTTGCCTTGAAGTTCTTCAATCTTTCCTTTCCTAGGCCTAATGATGTCCTTAAACAGAGGATACCAAATAATTGGCGCTACAGCAGCCACTTGCTTGGCTTGTTTCACTCCAGCTTCTGTGATCCATATATTCATGAAAGATATCAGCTGTCACTCCAGTCACGGTTGGGGATGACCCTATGCCCAGCAGAGCTCCCACCGTTCCTGGCCTTCCCACAGCTCCCAGAACAAAGCGGTGGAGCGTTTCAATCATTACAAGATTTCTTTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

301

Amino Acids

34.54

Weight (kDa)

4.92

Isoelectric Point (pI)

62.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF247	PF03140	53 - 253	2.1e-43	Plant protein of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66610 AT1G66610 AT1G66620 AT1G66630 AT1G66650 AT1G66660 AT1G66660 AT5G37870 AT5G37890 AT5G37900 AT5G37910 AT5G37930 AT5G62800 AT5G62800
fragaria_vesca	FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_2g03850 FvH4_2g04470 FvH4_2g04471
malus_domestica	MD09G1260200.v1.1 MD09G1260400.v1.1 MD10G1106400.v1.1
prunus_persica	Prupe.3G152000_v2.0.a1 Prupe.3G152100_v2.0.a1 Prupe.3G152100_v2.0.a1 Prupe.3G152100_v2.0.a1 Prupe.8G145400_v2.0.a1 Prupe.8G145500_v2.0.a1
pyrus_communis	pycom09g17480 pycom09g17490 pycom10g09160
rosa_chinensis	RchiOBHm_Chr2g0111691 RchiOBHm_Chr3g0448681 RchiOBHm_Chr3g0493571 RchiOBHm_Chr6g0252861 RchiOBHm_Chr6g0252871 RchiOBHm_Chr6g0253841 RchiOBHm_Chr6g0253921 RchiOBHm_Chr6g0253941
rosa_laevigata	RLG00000007595 RLG00000014953 RLG00000014955 RLG00000014957 RLG00000014958 RLG00000015058 RLG00000017917 RLG00000022703
rosa_multiflora	Rmu_sc0000829.1_g000012 Rmu_sc0000829.1_g000015 Rmu_sc0000829.1_g000016 Rmu_sc0000927.1_g000006 Rmu_sc0001716.1_g000004 Rmu_sc0003921.1_g000007
rosa_roxburghii	Rroxscaffold_4G00307570 Rroxscaffold_6G00391470 Rroxscaffold_6G00426970 Rroxscaffold_7G00211390 Rroxscaffold_7G00211420 Rroxscaffold_7G00211430 Rroxscaffold_7G00212350 Rroxscaffold_7G00212370
rosa_rugosa	Rorug02G0175400 Rorug02G0615300 Rorug03G0262600 Rorug03G0262700 Rorug05G0539200 Rorug05G0539400 Rorug05G0548300 Rorug05G0548400 Rorug05G0548500 Rorug05G0548600
rosa_samantha	Rh2BG240600 Rh3AG014100 Rh3AG311400 Rh3BG013900 Rh3BG347300 Rh3CG345400 Rh3DG347600 Rh6AG055200 Rh6AG063900 Rh6AG064600 Rh6AG064800 Rh6BG049400 Rh6BG049500 Rh6BG057700 Rh6BG058000 Rh6CG048200 Rh6CG048300 Rh6CG057600 Rh6CG057900 Rh6DG043800 Rh6DG043900
rosa_wichuraiana	Rw2G017640 Rw6G005000 Rw6G005670 Rw6G005710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	288
AatII	GACGTC	1 cut(s)	390
AccI	GTMKAC	1 cut(s)	138
AccII	CGCG	1 cut(s)	7
AciI	CCGC	3 cut(s)	101, 107, 867
AclWI	GGATC	5 cut(s)	485, 614, 618, 627, 749
AcsI	RAATTY	2 cut(s)	251, 371
AcyI	GRCGYC	2 cut(s)	94, 387
AfiI	CCNNNNNNNGG	2 cut(s)	607, 666
AgsI	TTSAA	7 cut(s)	257, 338, 551, 578, 643, 652, 881
AjnI	CCWGG	1 cut(s)	837
AluBI	AGCT	8 cut(s)	80, 451, 547, 629, 747, 781, 826, 853
AluI	AGCT	8 cut(s)	80, 451, 547, 629, 747, 781, 826, 853
Alw21I	GWGCWC	1 cut(s)	828
AlwI	GGATC	5 cut(s)	485, 614, 618, 627, 749
AlwNI	CAGNNNCTG	1 cut(s)	750
AoxI	GGCC	3 cut(s)	311, 668, 840
ApeKI	GCWGC	1 cut(s)	717
ApoI	RAATTY	2 cut(s)	251, 371
AsiSI	GCGATCGC	1 cut(s)	198
Asp700I	GAANNNNTTC	1 cut(s)	647
AspA2I	CCTAGG	1 cut(s)	665
AspLEI	GCGC	3 cut(s)	7, 9, 711
AspS9I	GGNCC	2 cut(s)	221, 311
AsuC2I	CCSGG	1 cut(s)	404
AsuHPI	GGTGA	3 cut(s)	29, 62, 70
AvaII	GGWCC	1 cut(s)	221
AvrII	CCTAGG	1 cut(s)	665
BamHI	GGATCC	1 cut(s)	619
BanII	GRGCYC	1 cut(s)	828
Bbv12I	GWGCWC	1 cut(s)	828
BbvI	GCAGC	1 cut(s)	729
BccI	CCATC	2 cut(s)	8, 425
BceAI	ACGGC	1 cut(s)	326
BciT130I	CCWGG	1 cut(s)	839
BciVI	GTATCC	1 cut(s)	687
BcnI	CCSGG	1 cut(s)	404
BfaI	CTAG	5 cut(s)	98, 129, 323, 626, 666
BfmI	CTRYAG	1 cut(s)	712
BfoI	RGCGCY	1 cut(s)	712
BfuI	GTATCC	1 cut(s)	687
BglII	AGATCT	1 cut(s)	302
BisI	GCNGC	1 cut(s)	718
BlnI	CCTAGG	1 cut(s)	665
BlsI	GCNGC	1 cut(s)	719
Bme1390I	CCNGG	2 cut(s)	404, 839
Bme18I	GGWCC	1 cut(s)	221
BmgT120I	GGNCC	2 cut(s)	221, 311
BmiI	GGNNCC	1 cut(s)	621
BmrFI	CCNGG	2 cut(s)	404, 839
BpmI	CTGGAG	2 cut(s)	727, 773
Bpu10I	CCTNAGC	1 cut(s)	606
BpuEI	CTTGAG	2 cut(s)	133, 527
BpuMI	CCSGG	1 cut(s)	404
Bsa29I	ATCGAT	1 cut(s)	177
BsaBI	GATNNNNATC	1 cut(s)	215
BsaHI	GRCGYC	2 cut(s)	94, 387
BsaJI	CCNNGG	3 cut(s)	232, 509, 665
Bsc4I	CCNNNNNNNGG	2 cut(s)	607, 666
Bse1I	ACTGG	2 cut(s)	252, 790
Bse8I	GATNNNNATC	1 cut(s)	215
BseBI	CCWGG	1 cut(s)	839
BseCI	ATCGAT	1 cut(s)	177
BseDI	CCNNGG	3 cut(s)	232, 509, 665
BseGI	GGATG	1 cut(s)	810
BseJI	GATNNNNATC	1 cut(s)	215
BseLI	CCNNNNNNNGG	2 cut(s)	607, 666
BseNI	ACTGG	2 cut(s)	252, 790
BsePI	GCGCGC	1 cut(s)	5
BseRI	GAGGAG	4 cut(s)	62, 275, 395, 530
BseXI	GCAGC	1 cut(s)	729
BseYI	CCCAGC	1 cut(s)	817
Bsh1236I	CGCG	1 cut(s)	7
Bsh1285I	CGRYCG	2 cut(s)	198, 219
BshFI	GGCC	3 cut(s)	313, 670, 842
BshVI	ATCGAT	1 cut(s)	177
BsiEI	CGRYCG	2 cut(s)	198, 219
BsiHKAI	GWGCWC	1 cut(s)	828
BsiSI	CCGG	1 cut(s)	404
BslI	CCNNNNNNNGG	2 cut(s)	607, 666
BsmI	GAATGC	1 cut(s)	116
BsnI	GGCC	3 cut(s)	313, 670, 842
Bsp1286I	GDGCHC	1 cut(s)	828
Bsp19I	CCATGG	1 cut(s)	509
BspACI	CCGC	3 cut(s)	101, 107, 867
BspANI	GGCC	3 cut(s)	313, 670, 842
BspDI	ATCGAT	1 cut(s)	177
BspFNI	CGCG	1 cut(s)	7
BspHI	TCATGA	1 cut(s)	766
BspLI	GGNNCC	1 cut(s)	621
BspPI	GGATC	5 cut(s)	485, 614, 618, 627, 749
BspQI	GCTCTTC	1 cut(s)	27
BsrI	ACTGG	2 cut(s)	252, 790
BssECI	CCNNGG	3 cut(s)	232, 509, 665
BssHII	GCGCGC	1 cut(s)	5
BssNI	GRCGYC	2 cut(s)	94, 387
BssT1I	CCWWGG	2 cut(s)	509, 665
Bst2UI	CCWGG	1 cut(s)	839
Bst4CI	ACNGT	4 cut(s)	28, 143, 798, 834
Bst6I	CTCTTC	1 cut(s)	27
BstACI	GRCGYC	2 cut(s)	94, 387
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	1 cut(s)	606
BstDSI	CCRYGG	2 cut(s)	232, 509
BstENI	CCTNNNNNAGG	1 cut(s)	664
BstF5I	GGATG	1 cut(s)	810
BstFNI	CGCG	1 cut(s)	7
BstH2I	RGCGCY	1 cut(s)	712
BstHHI	GCGC	3 cut(s)	7, 9, 711
BstMCI	CGRYCG	2 cut(s)	198, 219
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 635, 717
BstNI	CCWGG	1 cut(s)	839
BstSCI	CCNGG	2 cut(s)	402, 837
BstSFI	CTRYAG	1 cut(s)	712
BstUI	CGCG	1 cut(s)	7
BstV1I	GCAGC	1 cut(s)	729
BstX2I	RGATCY	2 cut(s)	302, 619
BstXI	CCANNNNNNTGG	2 cut(s)	705, 728
BstYI	RGATCY	2 cut(s)	302, 619
Bsu15I	ATCGAT	1 cut(s)	177
BsuI	GTATCC	1 cut(s)	687
BsuRI	GGCC	3 cut(s)	313, 670, 842
BsuTUI	ATCGAT	1 cut(s)	177
BtgI	CCRYGG	2 cut(s)	232, 509
BtsCI	GGATG	1 cut(s)	810
BtsI	GCAGTG	1 cut(s)	60
BtsIMutI	CAGTG	2 cut(s)	9, 60
Cac8I	GCNNGC	1 cut(s)	7
CaiI	CAGNNNCTG	1 cut(s)	750
CciI	TCATGA	1 cut(s)	766
CfoI	GCGC	3 cut(s)	7, 9, 711
Cfr13I	GGNCC	2 cut(s)	221, 311
ClaI	ATCGAT	1 cut(s)	177
CseI	GACGC	1 cut(s)	83
CviAII	CATG	5 cut(s)	74, 394, 510, 614, 767
DdeI	CTNAG	1 cut(s)	606
DrdI	GACNNNNNNGTC	1 cut(s)	288
DseDI	GACNNNNNNGTC	1 cut(s)	288
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
Ecl136II	GAGCTC	1 cut(s)	826
Eco130I	CCWWGG	2 cut(s)	509, 665
Eco147I	AGGCCT	1 cut(s)	670
Eco24I	GRGCYC	1 cut(s)	828
Eco32I	GATATC	2 cut(s)	181, 776
Eco47I	GGWCC	1 cut(s)	221
Eco53kI	GAGCTC	1 cut(s)	826
EcoICRI	GAGCTC	1 cut(s)	826
EcoNI	CCTNNNNNAGG	1 cut(s)	664
EcoRI	GAATTC	1 cut(s)	371
EcoRII	CCWGG	1 cut(s)	837
EcoRV	GATATC	2 cut(s)	181, 776
EcoT14I	CCWWGG	2 cut(s)	509, 665
EcoT38I	GRGCYC	1 cut(s)	828
ErhI	CCWWGG	2 cut(s)	509, 665
FaeI	CATG	5 cut(s)	77, 397, 513, 617, 770
FatI	CATG	5 cut(s)	73, 393, 509, 613, 766
FblI	GTMKAC	1 cut(s)	138
Fnu4HI	GCNGC	1 cut(s)	718
FokI	GGATG	1 cut(s)	817
FriOI	GRGCYC	1 cut(s)	828
Fsp4HI	GCNGC	1 cut(s)	718
FspBI	CTAG	5 cut(s)	98, 129, 323, 626, 666
GlaI	GCGC	3 cut(s)	6, 8, 710
GluI	GCNGC	1 cut(s)	718
GsaI	CCCAGC	1 cut(s)	821
GsuI	CTGGAG	2 cut(s)	727, 773
HaeII	RGCGCY	1 cut(s)	712
HaeIII	GGCC	3 cut(s)	313, 670, 842
HapII	CCGG	1 cut(s)	404
HgaI	GACGC	1 cut(s)	83
HhaI	GCGC	3 cut(s)	7, 9, 711
Hin1I	GRCGYC	2 cut(s)	94, 387
Hin1II	CATG	5 cut(s)	77, 397, 513, 617, 770
Hin6I	GCGC	3 cut(s)	5, 7, 709
HinP1I	GCGC	3 cut(s)	5, 7, 709
HindIII	AAGCTT	1 cut(s)	545
HinfI	GANTC	2 cut(s)	282, 517
HpaII	CCGG	1 cut(s)	404
HphI	GGTGA	3 cut(s)	29, 62, 70
Hpy166II	GTNNAC	2 cut(s)	139, 484
Hpy188I	TCNGA	1 cut(s)	221
Hpy188III	TCNNGA	6 cut(s)	150, 156, 203, 214, 323, 767
Hpy8I	GTNNAC	2 cut(s)	139, 484
HpyAV	CCTTC	2 cut(s)	84, 853
HpyCH4III	ACNGT	4 cut(s)	28, 143, 798, 834
HpyCH4IV	ACGT	1 cut(s)	387
HpyCH4V	TGCA	1 cut(s)	346
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 635, 717
HpyF3I	CTNAG	1 cut(s)	606
HpySE526I	ACGT	1 cut(s)	387
Hsp92I	GRCGYC	2 cut(s)	94, 387
Hsp92II	CATG	5 cut(s)	77, 397, 513, 617, 770
HspAI	GCGC	3 cut(s)	5, 7, 709
LguI	GCTCTTC	1 cut(s)	27
LmnI	GCTCC	4 cut(s)	205, 831, 858, 872
Lsp1109I	GCAGC	1 cut(s)	729
MaeI	CTAG	5 cut(s)	98, 129, 323, 626, 666
MaeII	ACGT	1 cut(s)	387
MaeIII	GTNAC	3 cut(s)	243, 783, 792
MboII	GAAGA	6 cut(s)	44, 338, 488, 559, 590, 640
MflI	RGATCY	2 cut(s)	302, 619
MhlI	GDGCHC	1 cut(s)	828
MluCI	AATT	6 cut(s)	251, 350, 371, 522, 581, 703
MlyI	GAGTC	1 cut(s)	276
MroXI	GAANNNNTTC	1 cut(s)	647
MseI	TTAA	2 cut(s)	276, 684
MslI	CAYNNNNRTG	2 cut(s)	237, 508
MspA1I	CMGCKG	1 cut(s)	781
MspI	CCGG	1 cut(s)	404
MspR9I	CCNGG	2 cut(s)	404, 839
Mva1269I	GAATGC	1 cut(s)	116
MvaI	CCWGG	1 cut(s)	839
MvnI	CGCG	1 cut(s)	7
MwoI	GCNNNNNNNGC	3 cut(s)	113, 635, 717
NciI	CCSGG	1 cut(s)	404
NcoI	CCATGG	1 cut(s)	509
NlaIII	CATG	5 cut(s)	77, 397, 513, 617, 770
NlaIV	GGNNCC	1 cut(s)	621
NmuCI	GTSAC	2 cut(s)	783, 792
PagI	TCATGA	1 cut(s)	766
PauI	GCGCGC	1 cut(s)	5
PceI	AGGCCT	1 cut(s)	670
PciSI	GCTCTTC	1 cut(s)	27
PctI	GAATGC	1 cut(s)	116
PdmI	GAANNNNTTC	1 cut(s)	647
PfeI	GAWTC	1 cut(s)	517
PkrI	GCNGC	1 cut(s)	719
Ple19I	CGATCG	2 cut(s)	198, 219
PleI	GAGTC	1 cut(s)	276
PpsI	GAGTC	1 cut(s)	276
Psp124BI	GAGCTC	1 cut(s)	828
Psp6I	CCWGG	1 cut(s)	837
PspFI	CCCAGC	1 cut(s)	817
PspGI	CCWGG	1 cut(s)	837
PspN4I	GGNNCC	1 cut(s)	621
PspPI	GGNCC	2 cut(s)	221, 311
PstNI	CAGNNNCTG	1 cut(s)	750
PsuI	RGATCY	2 cut(s)	302, 619
PteI	GCGCGC	1 cut(s)	5
PvuI	CGATCG	2 cut(s)	198, 219
PvuII	CAGCTG	1 cut(s)	781
RgaI	GCGATCGC	1 cut(s)	198
RseI	CAYNNNNRTG	2 cut(s)	237, 508
SacI	GAGCTC	1 cut(s)	828
SapI	GCTCTTC	1 cut(s)	27
SaqAI	TTAA	2 cut(s)	276, 684
SatI	GCNGC	1 cut(s)	718
Sau96I	GGNCC	2 cut(s)	221, 311
SchI	GAGTC	1 cut(s)	276
ScrFI	CCNGG	2 cut(s)	404, 839
SduI	GDGCHC	1 cut(s)	828
SfaAI	GCGATCGC	1 cut(s)	198
SfcI	CTRYAG	1 cut(s)	712
SgfI	GCGATCGC	1 cut(s)	198
SinI	GGWCC	1 cut(s)	221
SmiMI	CAYNNNNRTG	2 cut(s)	237, 508
SmlI	CTYRAG	2 cut(s)	148, 542
SmoI	CTYRAG	2 cut(s)	148, 542
Sse9I	AATT	6 cut(s)	251, 350, 371, 522, 581, 703
SseBI	AGGCCT	1 cut(s)	670
SsiI	CCGC	3 cut(s)	101, 107, 867
SspMI	CTAG	5 cut(s)	98, 129, 323, 626, 666
SstI	GAGCTC	1 cut(s)	828
StuI	AGGCCT	1 cut(s)	670
StyD4I	CCNGG	2 cut(s)	402, 837
StyI	CCWWGG	2 cut(s)	509, 665
TaaI	ACNGT	4 cut(s)	28, 143, 798, 834
TaiI	ACGT	1 cut(s)	390
TaqI	TCGA	6 cut(s)	177, 215, 280, 292, 414, 457
TasI	AATT	6 cut(s)	251, 350, 371, 522, 581, 703
TfiI	GAWTC	1 cut(s)	517
Tru1I	TTAA	2 cut(s)	276, 684
Tru9I	TTAA	2 cut(s)	276, 684
TscAI	CASTG	2 cut(s)	16, 60
TseFI	GTSAC	2 cut(s)	783, 792
TseI	GCWGC	1 cut(s)	717
Tsp45I	GTSAC	2 cut(s)	783, 792
TspDTI	ATGAA	4 cut(s)	489, 577, 755, 783
TspGWI	ACGGA	1 cut(s)	249
TspRI	CASTG	2 cut(s)	16, 60
VpaK11BI	GGWCC	1 cut(s)	221
XagI	CCTNNNNNAGG	1 cut(s)	664
XapI	RAATTY	2 cut(s)	251, 371
XbaI	TCTAGA	1 cut(s)	322
XmaJI	CCTAGG	1 cut(s)	665
XmiI	GTMKAC	1 cut(s)	138
XmnI	GAANNNNTTC	1 cut(s)	647
XspI	CTAG	5 cut(s)	98, 129, 323, 626, 666
ZraI	GACGTC	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.