E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Sina_ZnF | PF21361 | 35 - 88 | 1.9e-08 | Sina, zinc finger |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 282 |
| AciI | CCGC | 1 cut(s) | 289 |
| AclWI | GGATC | 2 cut(s) | 36, 74 |
| AcuI | CTGAAG | 1 cut(s) | 204 |
| AfaI | GTAC | 5 cut(s) | 94, 187, 236, 284, 351 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 200 |
| AgsI | TTSAA | 4 cut(s) | 144, 247, 341, 382 |
| AluBI | AGCT | 2 cut(s) | 224, 231 |
| AluI | AGCT | 2 cut(s) | 224, 231 |
| Alw26I | GTCTC | 3 cut(s) | 30, 68, 220 |
| AlwI | GGATC | 2 cut(s) | 36, 74 |
| ApeKI | GCWGC | 3 cut(s) | 16, 54, 123 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 227, 259, 305, 337 |
| BbvI | GCAGC | 3 cut(s) | 28, 66, 110 |
| BceAI | ACGGC | 2 cut(s) | 4, 42 |
| BcoDI | GTCTC | 3 cut(s) | 30, 68, 220 |
| BfaI | CTAG | 2 cut(s) | 147, 225 |
| BfuAI | ACCTGC | 1 cut(s) | 282 |
| BisI | GCNGC | 3 cut(s) | 17, 55, 124 |
| BlsI | GCNGC | 3 cut(s) | 18, 56, 125 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 200 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 200 |
| BseXI | GCAGC | 3 cut(s) | 28, 66, 110 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 200 |
| BsmAI | GTCTC | 3 cut(s) | 30, 68, 220 |
| BsmBI | CGTCTC | 2 cut(s) | 30, 68 |
| BsmI | GAATGC | 1 cut(s) | 175 |
| Bsp1407I | TGTACA | 3 cut(s) | 185, 234, 282 |
| Bsp143I | GATC | 2 cut(s) | 28, 66 |
| BspACI | CCGC | 1 cut(s) | 289 |
| BspMI | ACCTGC | 1 cut(s) | 282 |
| BspPI | GGATC | 2 cut(s) | 36, 74 |
| BsrGI | TGTACA | 3 cut(s) | 185, 234, 282 |
| BssMI | GATC | 2 cut(s) | 28, 66 |
| Bst6I | CTCTTC | 1 cut(s) | 223 |
| BstAUI | TGTACA | 3 cut(s) | 185, 234, 282 |
| BstC8I | GCNNGC | 2 cut(s) | 169, 173 |
| BstKTI | GATC | 2 cut(s) | 31, 69 |
| BstMAI | GTCTC | 3 cut(s) | 30, 68, 220 |
| BstMBI | GATC | 2 cut(s) | 28, 66 |
| BstNSI | RCATGY | 3 cut(s) | 171, 175, 192 |
| BstV1I | GCAGC | 3 cut(s) | 28, 66, 110 |
| BveI | ACCTGC | 1 cut(s) | 282 |
| Cac8I | GCNNGC | 2 cut(s) | 169, 173 |
| Csp6I | GTAC | 5 cut(s) | 93, 186, 235, 283, 350 |
| CviAII | CATG | 6 cut(s) | 136, 158, 168, 172, 189, 257 |
| CviJI | RGCY | 5 cut(s) | 19, 57, 123, 224, 231 |
| CviKI_1 | RGCY | 5 cut(s) | 19, 57, 123, 224, 231 |
| CviQI | GTAC | 5 cut(s) | 93, 186, 235, 283, 350 |
| DpnI | GATC | 2 cut(s) | 30, 68 |
| DpnII | GATC | 2 cut(s) | 28, 66 |
| Eam1104I | CTCTTC | 1 cut(s) | 223 |
| EarI | CTCTTC | 1 cut(s) | 223 |
| Eco57I | CTGAAG | 1 cut(s) | 204 |
| EcoT22I | ATGCAT | 2 cut(s) | 173, 177 |
| Esp3I | CGTCTC | 2 cut(s) | 30, 68 |
| FaeI | CATG | 6 cut(s) | 139, 161, 171, 175, 192, 260 |
| FaiI | YATR | 8 cut(s) | 103, 120, 137, 159, 169, 173, 190, 258 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 82, 114 |
| FatI | CATG | 6 cut(s) | 135, 157, 167, 171, 188, 256 |
| Fnu4HI | GCNGC | 3 cut(s) | 17, 55, 124 |
| Fsp4HI | GCNGC | 3 cut(s) | 17, 55, 124 |
| FspBI | CTAG | 2 cut(s) | 147, 225 |
| GluI | GCNGC | 3 cut(s) | 17, 55, 124 |
| Hin1II | CATG | 6 cut(s) | 139, 161, 171, 175, 192, 260 |
| HinfI | GANTC | 4 cut(s) | 41, 79, 86, 369 |
| Hpy166II | GTNNAC | 1 cut(s) | 283 |
| Hpy188I | TCNGA | 2 cut(s) | 28, 66 |
| Hpy188III | TCNNGA | 5 cut(s) | 35, 73, 83, 247, 341 |
| Hpy8I | GTNNAC | 1 cut(s) | 283 |
| HpyCH4IV | ACGT | 2 cut(s) | 352, 374 |
| HpyCH4V | TGCA | 6 cut(s) | 126, 171, 175, 207, 269, 388 |
| HpySE526I | ACGT | 2 cut(s) | 352, 374 |
| Hsp92II | CATG | 6 cut(s) | 139, 161, 171, 175, 192, 260 |
| Kzo9I | GATC | 2 cut(s) | 28, 66 |
| LmnI | GCTCC | 1 cut(s) | 228 |
| LpnPI | CCDG | 4 cut(s) | 68, 186, 277, 374 |
| Lsp1109I | GCAGC | 3 cut(s) | 28, 66, 110 |
| MaeI | CTAG | 2 cut(s) | 147, 225 |
| MaeII | ACGT | 2 cut(s) | 352, 374 |
| MalI | GATC | 2 cut(s) | 30, 68 |
| MboI | GATC | 2 cut(s) | 28, 66 |
| MboII | GAAGA | 3 cut(s) | 210, 325, 329 |
| MmeI | TCCRAC | 2 cut(s) | 6, 44 |
| MnlI | CCTC | 1 cut(s) | 204 |
| Mph1103I | ATGCAT | 2 cut(s) | 173, 177 |
| Mva1269I | GAATGC | 1 cut(s) | 175 |
| NdeII | GATC | 2 cut(s) | 28, 66 |
| NlaIII | CATG | 6 cut(s) | 139, 161, 171, 175, 192, 260 |
| NsiI | ATGCAT | 2 cut(s) | 173, 177 |
| NspI | RCATGY | 3 cut(s) | 171, 175, 192 |
| PaeI | GCATGC | 2 cut(s) | 171, 175 |
| PctI | GAATGC | 1 cut(s) | 175 |
| PfeI | GAWTC | 4 cut(s) | 41, 79, 86, 369 |
| PkrI | GCNGC | 3 cut(s) | 18, 56, 125 |
| RsaI | GTAC | 5 cut(s) | 94, 187, 236, 284, 351 |
| RsaNI | GTAC | 5 cut(s) | 93, 186, 235, 283, 350 |
| SatI | GCNGC | 3 cut(s) | 17, 55, 124 |
| Sau3AI | GATC | 2 cut(s) | 28, 66 |
| SetI | ASST | 8 cut(s) | 226, 233, 296, 329, 351, 355, 364, 377 |
| SphI | GCATGC | 2 cut(s) | 171, 175 |
| SsiI | CCGC | 1 cut(s) | 289 |
| SspMI | CTAG | 2 cut(s) | 147, 225 |
| TaiI | ACGT | 2 cut(s) | 355, 377 |
| TaqI | TCGA | 3 cut(s) | 34, 72, 106 |
| TatI | WGTACW | 4 cut(s) | 92, 185, 234, 282 |
| TfiI | GAWTC | 4 cut(s) | 41, 79, 86, 369 |
| TseI | GCWGC | 3 cut(s) | 16, 54, 123 |
| TspDTI | ATGAA | 1 cut(s) | 174 |
| TspGWI | ACGGA | 1 cut(s) | 289 |
| XceI | RCATGY | 3 cut(s) | 171, 175, 192 |
| XspI | CTAG | 2 cut(s) | 147, 225 |
| Zsp2I | ATGCAT | 2 cut(s) | 173, 177 |