Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000395

Physical Location & Seq

Genomic Coordinates Forward (+)

820877 .. 821164

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41610

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGAGAAGGTTCTTGAATCAATTACAACTTCTGCTACTAGTACTGCAAGGGTCATAACCCTAACAGAACCAGAAGTGCTTGATTGTCCAATTTGCTGTCAACCATTGACCATTCCTATTTTCCAATGTGACAAAAATGGGCATATAGTCTGCTCCTCATGCCGAGGTAACATCAAAGATAAATGTCCCTCTTGTGCCTGCACCTTCAGCTCCAGTCGTAATTTGGCCATGGAAAAGCCCAGAAGCTATCTTGTTTTTGTTCAAAACAACCTTAATTTAACTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

95

Amino Acids

10.44

Weight (kDa)

7.48

Isoelectric Point (pI)

54.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sina_RING	PF21362	29 - 65	1.6e-10	E3 ubiquitin-protein ligase sina/sinah, RING finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66610 AT1G66610 AT1G66620 AT1G66630 AT1G66650 AT1G66660 AT1G66660 AT5G37870 AT5G37890 AT5G37900 AT5G37910 AT5G37930 AT5G62800 AT5G62800
fragaria_vesca	FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_2g03850 FvH4_2g04470 FvH4_2g04471
malus_domestica	MD09G1260200.v1.1 MD09G1260400.v1.1 MD10G1106400.v1.1
prunus_persica	Prupe.3G152000_v2.0.a1 Prupe.3G152100_v2.0.a1 Prupe.3G152100_v2.0.a1 Prupe.3G152100_v2.0.a1 Prupe.8G145400_v2.0.a1 Prupe.8G145500_v2.0.a1
pyrus_communis	pycom09g17480 pycom09g17490 pycom10g09160
rosa_chinensis	RchiOBHm_Chr2g0111691 RchiOBHm_Chr3g0448681 RchiOBHm_Chr3g0493571 RchiOBHm_Chr6g0252861 RchiOBHm_Chr6g0252871 RchiOBHm_Chr6g0253841 RchiOBHm_Chr6g0253921 RchiOBHm_Chr6g0253941
rosa_laevigata	RLG00000007595 RLG00000014953 RLG00000014955 RLG00000014957 RLG00000014958 RLG00000015058 RLG00000017917 RLG00000022703
rosa_multiflora	Rmu_sc0000829.1_g000012 Rmu_sc0000829.1_g000015 Rmu_sc0000829.1_g000016 Rmu_sc0000927.1_g000006 Rmu_sc0001716.1_g000004 Rmu_sc0003921.1_g000007
rosa_roxburghii	Rroxscaffold_4G00307570 Rroxscaffold_6G00391470 Rroxscaffold_6G00426970 Rroxscaffold_7G00211390 Rroxscaffold_7G00211420 Rroxscaffold_7G00211430 Rroxscaffold_7G00212350 Rroxscaffold_7G00212370
rosa_rugosa	Rorug02G0175400 Rorug02G0615300 Rorug03G0262600 Rorug03G0262700 Rorug05G0539200 Rorug05G0539400 Rorug05G0548300 Rorug05G0548400 Rorug05G0548500 Rorug05G0548600
rosa_samantha	Rh2BG240600 Rh3AG014100 Rh3AG311400 Rh3BG013900 Rh3BG347300 Rh3CG345400 Rh3DG347600 Rh6AG055200 Rh6AG063900 Rh6AG064600 Rh6AG064800 Rh6BG049400 Rh6BG049500 Rh6BG057700 Rh6BG058000 Rh6CG048200 Rh6CG048300 Rh6CG057600 Rh6CG057900 Rh6DG043800 Rh6DG043900
rosa_wichuraiana	Rw2G017640 Rw6G005000 Rw6G005670 Rw6G005710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	225
AcuI	CTGAAG	1 cut(s)	190
AfaI	GTAC	1 cut(s)	43
AgsI	TTSAA	2 cut(s)	17, 263
AhlI	ACTAGT	1 cut(s)	38
AluBI	AGCT	2 cut(s)	210, 246
AluI	AGCT	2 cut(s)	210, 246
AoxI	GGCC	1 cut(s)	225
BalI	TGGCCA	1 cut(s)	227
BcuI	ACTAGT	1 cut(s)	38
BfaI	CTAG	1 cut(s)	39
BmcAI	AGTACT	1 cut(s)	43
BpmI	CTGGAG	1 cut(s)	196
BsaJI	CCNNGG	2 cut(s)	163, 228
Bse1I	ACTGG	1 cut(s)	213
BseDI	CCNNGG	2 cut(s)	163, 228
BseNI	ACTGG	1 cut(s)	213
BseRI	GAGGAG	1 cut(s)	145
BsgI	GTGCAG	1 cut(s)	184
BshFI	GGCC	1 cut(s)	227
BslFI	GGGAC	1 cut(s)	171
BsmFI	GGGAC	1 cut(s)	171
BsnI	GGCC	1 cut(s)	227
Bsp19I	CCATGG	1 cut(s)	228
BspANI	GGCC	1 cut(s)	227
BsrI	ACTGG	1 cut(s)	213
BssECI	CCNNGG	2 cut(s)	163, 228
BssT1I	CCWWGG	1 cut(s)	228
BstC8I	GCNNGC	1 cut(s)	199
BstDSI	CCRYGG	1 cut(s)	228
BstMWI	GCNNNNNNNGC	2 cut(s)	159, 207
BsuRI	GGCC	1 cut(s)	227
BtgI	CCRYGG	1 cut(s)	228
Cac8I	GCNNGC	1 cut(s)	199
Csp6I	GTAC	1 cut(s)	42
CviAII	CATG	2 cut(s)	159, 229
CviJI	RGCY	4 cut(s)	210, 227, 238, 246
CviKI_1	RGCY	4 cut(s)	210, 227, 238, 246
CviQI	GTAC	1 cut(s)	42
EaeI	YGGCCR	1 cut(s)	225
Eco130I	CCWWGG	1 cut(s)	228
Eco57I	CTGAAG	1 cut(s)	190
EcoT14I	CCWWGG	1 cut(s)	228
ErhI	CCWWGG	1 cut(s)	228
FaeI	CATG	2 cut(s)	162, 232
FaiI	YATR	5 cut(s)	56, 144, 146, 160, 230
FaqI	GGGAC	1 cut(s)	171
FatI	CATG	2 cut(s)	158, 228
FspBI	CTAG	1 cut(s)	39
GsuI	CTGGAG	1 cut(s)	196
HaeIII	GGCC	1 cut(s)	227
Hin1II	CATG	2 cut(s)	162, 232
HincII	GTYRAC	1 cut(s)	101
HindII	GTYRAC	1 cut(s)	101
HinfI	GANTC	1 cut(s)	17
Hpy166II	GTNNAC	1 cut(s)	101
Hpy188III	TCNNGA	1 cut(s)	14
Hpy8I	GTNNAC	1 cut(s)	101
HpyAV	CCTTC	1 cut(s)	214
HpyCH4V	TGCA	2 cut(s)	47, 201
HpyF10VI	GCNNNNNNNGC	2 cut(s)	159, 207
Hsp92II	CATG	2 cut(s)	162, 232
LmnI	GCTCC	2 cut(s)	158, 215
LpnPI	CCDG	4 cut(s)	84, 211, 226, 253
MaeI	CTAG	1 cut(s)	39
MaeIII	GTNAC	2 cut(s)	128, 167
MlsI	TGGCCA	1 cut(s)	227
MluCI	AATT	5 cut(s)	21, 90, 220, 274, 283
MluNI	TGGCCA	1 cut(s)	227
MnlI	CCTC	3 cut(s)	158, 166, 199
Mox20I	TGGCCA	1 cut(s)	227
MscI	TGGCCA	1 cut(s)	227
MseI	TTAA	3 cut(s)	273, 278, 286
Msp20I	TGGCCA	1 cut(s)	227
MwoI	GCNNNNNNNGC	2 cut(s)	159, 207
NcoI	CCATGG	1 cut(s)	228
NlaIII	CATG	2 cut(s)	162, 232
NmeAIII	GCCGAG	1 cut(s)	188
NmuCI	GTSAC	1 cut(s)	128
PfeI	GAWTC	1 cut(s)	17
RsaI	GTAC	1 cut(s)	43
RsaNI	GTAC	1 cut(s)	42
SaqAI	TTAA	3 cut(s)	273, 278, 286
ScaI	AGTACT	1 cut(s)	43
SetI	ASST	6 cut(s)	12, 169, 206, 212, 248, 273
SpeI	ACTAGT	1 cut(s)	38
Sse9I	AATT	5 cut(s)	21, 90, 220, 274, 283
SspMI	CTAG	1 cut(s)	39
StyI	CCWWGG	1 cut(s)	228
TasI	AATT	5 cut(s)	21, 90, 220, 274, 283
TatI	WGTACW	1 cut(s)	41
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	3 cut(s)	273, 278, 286
Tru9I	TTAA	3 cut(s)	273, 278, 286
TseFI	GTSAC	1 cut(s)	128
Tsp45I	GTSAC	1 cut(s)	128
XcmI	CCANNNNNNNNNTGG	1 cut(s)	220
XspI	CTAG	1 cut(s)	39
ZrmI	AGTACT	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.