Rh3AG014100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000395
Physical Location & Seq
Forward (+)
871879 .. 872061
183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG014100.1

Sequence Viewer

Length: 183 bp
ATGAACCAAGAATTGCAACTAGACTATGAGCTAGAGGAAGAGCCAAATAACGAACCAAGTACTGCTTTTGGTTCATTCCCACCCGGGAAGGAAGATTCTGCGGTCAGGACTTTTACTGAACAAGAAGTGCTTCATTGCACAATTTGCAATGAACCCTTGACCACCACCACCCATATTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

60

Amino Acids

6.83

Weight (kDa)

4.11

Isoelectric Point (pI)

75.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000395)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66610 AT1G66610 AT1G66620 AT1G66630 AT1G66650 AT1G66660 AT1G66660 AT5G37870 AT5G37890 AT5G37900 AT5G37910 AT5G37930 AT5G62800 AT5G62800
fragaria_vesca FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_2g03850 FvH4_2g04470 FvH4_2g04471
malus_domestica MD09G1260200.v1.1 MD09G1260400.v1.1 MD10G1106400.v1.1
prunus_persica Prupe.3G152000_v2.0.a1 Prupe.3G152100_v2.0.a1 Prupe.3G152100_v2.0.a1 Prupe.3G152100_v2.0.a1 Prupe.8G145400_v2.0.a1 Prupe.8G145500_v2.0.a1
pyrus_communis pycom09g17480 pycom09g17490 pycom10g09160
rosa_chinensis RchiOBHm_Chr2g0111691 RchiOBHm_Chr3g0448681 RchiOBHm_Chr3g0493571 RchiOBHm_Chr6g0252861 RchiOBHm_Chr6g0252871 RchiOBHm_Chr6g0253841 RchiOBHm_Chr6g0253921 RchiOBHm_Chr6g0253941
rosa_laevigata RLG00000007595 RLG00000014953 RLG00000014955 RLG00000014957 RLG00000014958 RLG00000015058 RLG00000017917 RLG00000022703
rosa_multiflora Rmu_sc0000829.1_g000012 Rmu_sc0000829.1_g000015 Rmu_sc0000829.1_g000016 Rmu_sc0000927.1_g000006 Rmu_sc0001716.1_g000004 Rmu_sc0003921.1_g000007
rosa_roxburghii Rroxscaffold_4G00307570 Rroxscaffold_6G00391470 Rroxscaffold_6G00426970 Rroxscaffold_7G00211390 Rroxscaffold_7G00211420 Rroxscaffold_7G00211430 Rroxscaffold_7G00212350 Rroxscaffold_7G00212370
rosa_rugosa Rorug02G0175400 Rorug02G0615300 Rorug03G0262600 Rorug03G0262700 Rorug05G0539200 Rorug05G0539400 Rorug05G0548300 Rorug05G0548400 Rorug05G0548500 Rorug05G0548600
rosa_samantha Rh2BG240600 Rh3AG014100 Rh3AG311400 Rh3BG013900 Rh3BG347300 Rh3CG345400 Rh3DG347600 Rh6AG055200 Rh6AG063900 Rh6AG064600 Rh6AG064800 Rh6BG049400 Rh6BG049500 Rh6BG057700 Rh6BG058000 Rh6CG048200 Rh6CG048300 Rh6CG057600 Rh6CG057900 Rh6DG043800 Rh6DG043900
rosa_wichuraiana Rw2G017640 Rw6G005000 Rw6G005670 Rw6G005710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 101
AfaI GTAC 1 cut(s) 61
AluBI AGCT 1 cut(s) 31
AluI AGCT 1 cut(s) 31
Ama87I CYCGRG 1 cut(s) 83
Asp700I GAANNNNTTC 1 cut(s) 129
AsuC2I CCSGG 2 cut(s) 84, 85
AvaI CYCGRG 1 cut(s) 83
BcnI CCSGG 2 cut(s) 84, 85
BfaI CTAG 2 cut(s) 20, 32
BmcAI AGTACT 1 cut(s) 61
Bme1390I CCNGG 2 cut(s) 84, 85
BmeT110I CYCGRG 1 cut(s) 83
BmrFI CCNGG 2 cut(s) 84, 85
BpuMI CCSGG 2 cut(s) 84, 85
BsaJI CCNNGG 1 cut(s) 83
Bse3DI GCAATG 2 cut(s) 133, 154
BseDI CCNNGG 1 cut(s) 83
BseMI GCAATG 2 cut(s) 133, 154
BsiHKCI CYCGRG 1 cut(s) 83
BsiSI CCGG 1 cut(s) 84
BsoBI CYCGRG 1 cut(s) 83
BspACI CCGC 1 cut(s) 101
BspQI GCTCTTC 1 cut(s) 33
BsrDI GCAATG 2 cut(s) 133, 154
BssECI CCNNGG 1 cut(s) 83
Bst6I CTCTTC 1 cut(s) 33
BstAPI GCANNNNNTGC 1 cut(s) 144
BstMWI GCNNNNNNNGC 1 cut(s) 144
BstSCI CCNGG 2 cut(s) 82, 83
Cfr9I CCCGGG 1 cut(s) 83
Csp6I GTAC 1 cut(s) 60
CviJI RGCY 2 cut(s) 31, 43
CviKI_1 RGCY 2 cut(s) 31, 43
CviQI GTAC 1 cut(s) 60
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
Eco88I CYCGRG 1 cut(s) 83
FaiI YATR 2 cut(s) 27, 174
FalI AAGNNNNNCTT 4 cut(s) 49, 81, 114, 146
FspBI CTAG 2 cut(s) 20, 32
HapII CCGG 1 cut(s) 84
HinfI GANTC 1 cut(s) 95
HpaII CCGG 1 cut(s) 84
Hpy188III TCNNGA 1 cut(s) 106
HpyAV CCTTC 1 cut(s) 82
HpyCH4V TGCA 3 cut(s) 16, 138, 147
HpyF10VI GCNNNNNNNGC 1 cut(s) 144
LguI GCTCTTC 1 cut(s) 33
LpnPI CCDG 2 cut(s) 91, 97
MaeI CTAG 2 cut(s) 20, 32
MboII GAAGA 2 cut(s) 50, 104
MluCI AATT 2 cut(s) 11, 141
MnlI CCTC 1 cut(s) 28
MroXI GAANNNNTTC 1 cut(s) 129
MseI TTAA 1 cut(s) 181
MspI CCGG 1 cut(s) 84
MspR9I CCNGG 2 cut(s) 84, 85
MwoI GCNNNNNNNGC 1 cut(s) 144
NciI CCSGG 2 cut(s) 84, 85
PciSI GCTCTTC 1 cut(s) 33
PdmI GAANNNNTTC 1 cut(s) 129
PfeI GAWTC 1 cut(s) 95
RsaI GTAC 1 cut(s) 61
RsaNI GTAC 1 cut(s) 60
SapI GCTCTTC 1 cut(s) 33
SaqAI TTAA 1 cut(s) 181
ScaI AGTACT 1 cut(s) 61
ScrFI CCNGG 2 cut(s) 84, 85
SetI ASST 1 cut(s) 33
SmaI CCCGGG 1 cut(s) 85
Sse9I AATT 2 cut(s) 11, 141
SsiI CCGC 1 cut(s) 101
SspMI CTAG 2 cut(s) 20, 32
StyD4I CCNGG 2 cut(s) 82, 83
TasI AATT 2 cut(s) 11, 141
TatI WGTACW 1 cut(s) 59
TfiI GAWTC 1 cut(s) 95
Tru1I TTAA 1 cut(s) 181
Tru9I TTAA 1 cut(s) 181
TspDTI ATGAA 4 cut(s) 17, 63, 122, 165
TspMI CCCGGG 1 cut(s) 83
XmaI CCCGGG 1 cut(s) 83
XmnI GAANNNNTTC 1 cut(s) 129
XspI CTAG 2 cut(s) 20, 32
ZrmI AGTACT 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.