Rroxscaffold_4G00307570

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000395
Physical Location & Seq
Reverse (-)
28960484 .. 28960870
387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00307570.1

Sequence Viewer

Length: 387 bp
ATGCCGCCGAGGAAGTCTTCCACCACCGCCCACCGCCATCTTCGTCGCTCCCAACTACAACCAAGTGCCACTGCGGCACGGATCGGTGGCTCTATCGCTAGCCTAACACTTCCATCATCATCGATGTCACCATCCGCCGACGCCCCCGACCACCCGGCAAAGCATGAAATCCCGAAGAAGATCGTCGCCCGACGCCCCACCGCGCACCCCATCGAACAACACCGGCCACCGGTGCCGTTCCCGTCCAACCAACCTCGATCTAGAGTGACCGGATCCATCATATCCGCCACGAGAAAATTCCCGCAACGCGAGCACACCACCGCCCCCACTTTTGAGAAGCCGACTACGGGGATCCCCGCAGCCCTCAATCTCCCGGCGGCTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

13.81

Weight (kDa)

11.94

Isoelectric Point (pI)

81.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000395)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66610 AT1G66610 AT1G66620 AT1G66630 AT1G66650 AT1G66660 AT1G66660 AT5G37870 AT5G37890 AT5G37900 AT5G37910 AT5G37930 AT5G62800 AT5G62800
fragaria_vesca FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_2g03850 FvH4_2g04470 FvH4_2g04471
malus_domestica MD09G1260200.v1.1 MD09G1260400.v1.1 MD10G1106400.v1.1
prunus_persica Prupe.3G152000_v2.0.a1 Prupe.3G152100_v2.0.a1 Prupe.3G152100_v2.0.a1 Prupe.3G152100_v2.0.a1 Prupe.8G145400_v2.0.a1 Prupe.8G145500_v2.0.a1
pyrus_communis pycom09g17480 pycom09g17490 pycom10g09160
rosa_chinensis RchiOBHm_Chr2g0111691 RchiOBHm_Chr3g0448681 RchiOBHm_Chr3g0493571 RchiOBHm_Chr6g0252861 RchiOBHm_Chr6g0252871 RchiOBHm_Chr6g0253841 RchiOBHm_Chr6g0253921 RchiOBHm_Chr6g0253941
rosa_laevigata RLG00000007595 RLG00000014953 RLG00000014955 RLG00000014957 RLG00000014958 RLG00000015058 RLG00000017917 RLG00000022703
rosa_multiflora Rmu_sc0000829.1_g000012 Rmu_sc0000829.1_g000015 Rmu_sc0000829.1_g000016 Rmu_sc0000927.1_g000006 Rmu_sc0001716.1_g000004 Rmu_sc0003921.1_g000007
rosa_roxburghii Rroxscaffold_4G00307570 Rroxscaffold_6G00391470 Rroxscaffold_6G00426970 Rroxscaffold_7G00211390 Rroxscaffold_7G00211420 Rroxscaffold_7G00211430 Rroxscaffold_7G00212350 Rroxscaffold_7G00212370
rosa_rugosa Rorug02G0175400 Rorug02G0615300 Rorug03G0262600 Rorug03G0262700 Rorug05G0539200 Rorug05G0539400 Rorug05G0548300 Rorug05G0548400 Rorug05G0548500 Rorug05G0548600
rosa_samantha Rh2BG240600 Rh3AG014100 Rh3AG311400 Rh3BG013900 Rh3BG347300 Rh3CG345400 Rh3DG347600 Rh6AG055200 Rh6AG063900 Rh6AG064600 Rh6AG064800 Rh6BG049400 Rh6BG049500 Rh6BG057700 Rh6BG058000 Rh6CG048200 Rh6CG048300 Rh6CG057600 Rh6CG057900 Rh6DG043800 Rh6DG043900
rosa_wichuraiana Rw2G017640 Rw6G005000 Rw6G005670 Rw6G005710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 232
AccII CGCG 2 cut(s) 203, 309
AclWI GGATC 5 cut(s) 89, 267, 280, 346, 359
AcoI YGGCCR 1 cut(s) 224
AcsI RAATTY 1 cut(s) 296
AcyI GRCGYC 2 cut(s) 141, 193
AfiI CCNNNNNNNGG 2 cut(s) 229, 347
AgeI ACCGGT 1 cut(s) 229
Alw21I GWGCWC 1 cut(s) 315
AlwI GGATC 5 cut(s) 89, 267, 280, 346, 359
AoxI GGCC 1 cut(s) 224
ApeKI GCWGC 1 cut(s) 359
ApoI RAATTY 1 cut(s) 296
AsiGI ACCGGT 1 cut(s) 229
AspLEI GCGC 1 cut(s) 205
AsuC2I CCSGG 2 cut(s) 155, 374
AsuHPI GGTGA 1 cut(s) 120
AsuNHI GCTAGC 1 cut(s) 98
BamHI GGATCC 2 cut(s) 272, 351
BanI GGYRCC 1 cut(s) 232
BauI CACGAG 1 cut(s) 289
BbsI GAAGAC 1 cut(s) 9
Bbv12I GWGCWC 1 cut(s) 315
BbvI GCAGC 1 cut(s) 371
BccI CCATC 5 cut(s) 45, 121, 139, 218, 284
BceAI ACGGC 1 cut(s) 220
BcnI CCSGG 2 cut(s) 155, 374
BfaI CTAG 3 cut(s) 99, 261, 381
BglI GCCNNNNNGGC 1 cut(s) 74
BisI GCNGC 4 cut(s) 5, 75, 360, 378
BlsI GCNGC 4 cut(s) 6, 76, 361, 379
Bme1390I CCNGG 2 cut(s) 155, 374
BmiI GGNNCC 3 cut(s) 234, 274, 353
BmrFI CCNGG 2 cut(s) 155, 374
BmtI GCTAGC 1 cut(s) 102
BpiI GAAGAC 1 cut(s) 9
BpuMI CCSGG 2 cut(s) 155, 374
Bsa29I ATCGAT 1 cut(s) 122
BsaHI GRCGYC 2 cut(s) 141, 193
BsaJI CCNNGG 1 cut(s) 8
BsaWI WCCGGW 2 cut(s) 229, 269
Bsc4I CCNNNNNNNGG 2 cut(s) 229, 347
Bse118I RCCGGY 2 cut(s) 222, 229
BseCI ATCGAT 1 cut(s) 122
BseDI CCNNGG 1 cut(s) 8
BseGI GGATG 1 cut(s) 131
BseLI CCNNNNNNNGG 2 cut(s) 229, 347
BseXI GCAGC 1 cut(s) 371
Bsh1236I CGCG 2 cut(s) 203, 309
BshFI GGCC 1 cut(s) 226
BshNI GGYRCC 1 cut(s) 232
BshTI ACCGGT 1 cut(s) 229
BshVI ATCGAT 1 cut(s) 122
BsiHKAI GWGCWC 1 cut(s) 315
BsiSI CCGG 5 cut(s) 155, 223, 230, 270, 374
BslI CCNNNNNNNGG 2 cut(s) 229, 347
BsnI GGCC 1 cut(s) 226
Bsp1286I GDGCHC 1 cut(s) 315
Bsp143I GATC 5 cut(s) 81, 180, 257, 272, 351
BspANI GGCC 1 cut(s) 226
BspDI ATCGAT 1 cut(s) 122
BspFNI CGCG 2 cut(s) 203, 309
BspLI GGNNCC 3 cut(s) 234, 274, 353
BspOI GCTAGC 1 cut(s) 102
BspPI GGATC 5 cut(s) 89, 267, 280, 346, 359
BspT107I GGYRCC 1 cut(s) 232
BsrFI RCCGGY 2 cut(s) 222, 229
BssAI RCCGGY 2 cut(s) 222, 229
BssECI CCNNGG 1 cut(s) 8
BssMI GATC 5 cut(s) 81, 180, 257, 272, 351
BssNI GRCGYC 2 cut(s) 141, 193
BssSI CACGAG 1 cut(s) 289
Bst2BI CACGAG 1 cut(s) 289
BstACI GRCGYC 2 cut(s) 141, 193
BstC8I GCNNGC 2 cut(s) 100, 311
BstF5I GGATG 1 cut(s) 131
BstFNI CGCG 2 cut(s) 203, 309
BstHHI GCGC 1 cut(s) 205
BstKTI GATC 5 cut(s) 84, 183, 260, 275, 354
BstMBI GATC 5 cut(s) 81, 180, 257, 272, 351
BstMWI GCNNNNNNNGC 3 cut(s) 74, 232, 310
BstSCI CCNGG 2 cut(s) 153, 372
BstUI CGCG 2 cut(s) 203, 309
BstV1I GCAGC 1 cut(s) 371
BstV2I GAAGAC 1 cut(s) 9
BstX2I RGATCY 2 cut(s) 272, 351
BstYI RGATCY 2 cut(s) 272, 351
Bsu15I ATCGAT 1 cut(s) 122
BsuRI GGCC 1 cut(s) 226
BsuTUI ATCGAT 1 cut(s) 122
BtsCI GGATG 1 cut(s) 131
BtsI GCAGTG 1 cut(s) 69
BtsIMutI CAGTG 1 cut(s) 69
Cac8I GCNNGC 2 cut(s) 100, 311
CfoI GCGC 1 cut(s) 205
Cfr10I RCCGGY 2 cut(s) 222, 229
ClaI ATCGAT 1 cut(s) 122
CseI GACGC 2 cut(s) 149, 201
CspAI ACCGGT 1 cut(s) 229
CviAII CATG 1 cut(s) 164
CviJI RGCY 6 cut(s) 90, 102, 226, 340, 362, 380
CviKI_1 RGCY 6 cut(s) 90, 102, 226, 340, 362, 380
DpnI GATC 5 cut(s) 83, 182, 259, 274, 353
DpnII GATC 5 cut(s) 81, 180, 257, 272, 351
EaeI YGGCCR 1 cut(s) 224
EciI GGCGGA 2 cut(s) 124, 274
FaeI CATG 1 cut(s) 167
FaiI YATR 2 cut(s) 165, 281
FatI CATG 1 cut(s) 163
FauI CCCGC 2 cut(s) 309, 364
Fnu4HI GCNGC 4 cut(s) 5, 75, 360, 378
FokI GGATG 1 cut(s) 118
Fsp4HI GCNGC 4 cut(s) 5, 75, 360, 378
FspBI CTAG 3 cut(s) 99, 261, 381
GlaI GCGC 1 cut(s) 204
GluI GCNGC 4 cut(s) 5, 75, 360, 378
HaeIII GGCC 1 cut(s) 226
HapII CCGG 5 cut(s) 155, 223, 230, 270, 374
HgaI GACGC 2 cut(s) 149, 201
HhaI GCGC 1 cut(s) 205
Hin1I GRCGYC 2 cut(s) 141, 193
Hin1II CATG 1 cut(s) 167
Hin6I GCGC 1 cut(s) 203
HinP1I GCGC 1 cut(s) 203
HpaII CCGG 5 cut(s) 155, 223, 230, 270, 374
HphI GGTGA 1 cut(s) 120
Hpy188III TCNNGA 2 cut(s) 172, 261
Hpy99I CGWCG 4 cut(s) 48, 143, 188, 195
HpyF10VI GCNNNNNNNGC 3 cut(s) 74, 232, 310
Hsp92I GRCGYC 2 cut(s) 141, 193
Hsp92II CATG 1 cut(s) 167
HspAI GCGC 1 cut(s) 203
Kzo9I GATC 5 cut(s) 81, 180, 257, 272, 351
LmnI GCTCC 1 cut(s) 53
LpnPI CCDG 4 cut(s) 168, 236, 243, 283
Lsp1109I GCAGC 1 cut(s) 371
MaeI CTAG 3 cut(s) 99, 261, 381
MaeIII GTNAC 2 cut(s) 126, 265
MalI GATC 5 cut(s) 83, 182, 259, 274, 353
MboI GATC 5 cut(s) 81, 180, 257, 272, 351
MboII GAAGA 4 cut(s) 9, 32, 187, 190
MflI RGATCY 2 cut(s) 272, 351
MhlI GDGCHC 1 cut(s) 315
MluCI AATT 1 cut(s) 296
MmeI TCCRAC 1 cut(s) 270
MnlI CCTC 3 cut(s) 3, 264, 374
MspI CCGG 5 cut(s) 155, 223, 230, 270, 374
MspR9I CCNGG 2 cut(s) 155, 374
MvnI CGCG 2 cut(s) 203, 309
MwoI GCNNNNNNNGC 3 cut(s) 74, 232, 310
NciI CCSGG 2 cut(s) 155, 374
NdeII GATC 5 cut(s) 81, 180, 257, 272, 351
NheI GCTAGC 1 cut(s) 98
NlaIII CATG 1 cut(s) 167
NlaIV GGNNCC 3 cut(s) 234, 274, 353
NmeAIII GCCGAG 1 cut(s) 33
NmuCI GTSAC 2 cut(s) 126, 265
PinAI ACCGGT 1 cut(s) 229
PkrI GCNGC 4 cut(s) 6, 76, 361, 379
PspN4I GGNNCC 3 cut(s) 234, 274, 353
PsuI RGATCY 2 cut(s) 272, 351
SatI GCNGC 4 cut(s) 5, 75, 360, 378
Sau3AI GATC 5 cut(s) 81, 180, 257, 272, 351
ScrFI CCNGG 2 cut(s) 155, 374
SduI GDGCHC 1 cut(s) 315
SetI ASST 1 cut(s) 256
SgrAI CRCCGGYG 1 cut(s) 229
Sse9I AATT 1 cut(s) 296
SspMI CTAG 3 cut(s) 99, 261, 381
StyD4I CCNGG 2 cut(s) 153, 372
TaqI TCGA 3 cut(s) 122, 213, 256
TasI AATT 1 cut(s) 296
TauI GCSGC 3 cut(s) 7, 77, 380
TscAI CASTG 1 cut(s) 76
TseFI GTSAC 2 cut(s) 126, 265
TseI GCWGC 1 cut(s) 359
Tsp45I GTSAC 2 cut(s) 126, 265
TspDTI ATGAA 1 cut(s) 180
TspGWI ACGGA 1 cut(s) 94
TspRI CASTG 1 cut(s) 76
XapI RAATTY 1 cut(s) 296
XbaI TCTAGA 1 cut(s) 260
XspI CTAG 3 cut(s) 99, 261, 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.