E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 99 |
| AccII | CGCG | 1 cut(s) | 515 |
| AciI | CCGC | 2 cut(s) | 97, 513 |
| AclWI | GGATC | 4 cut(s) | 40, 123, 444, 769 |
| AfaI | GTAC | 3 cut(s) | 405, 469, 677 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 219, 407, 650, 806 |
| AgsI | TTSAA | 5 cut(s) | 157, 290, 493, 548, 835 |
| AluBI | AGCT | 2 cut(s) | 624, 744 |
| AluI | AGCT | 2 cut(s) | 624, 744 |
| Alw21I | GWGCWC | 2 cut(s) | 450, 746 |
| Alw26I | GTCTC | 2 cut(s) | 37, 674 |
| AlwI | GGATC | 4 cut(s) | 40, 123, 444, 769 |
| AoxI | GGCC | 1 cut(s) | 192 |
| ApeKI | GCWGC | 1 cut(s) | 624 |
| AspS9I | GGNCC | 2 cut(s) | 301, 797 |
| AsuHPI | GGTGA | 2 cut(s) | 705, 733 |
| AvaII | GGWCC | 2 cut(s) | 301, 797 |
| BanII | GRGCYC | 1 cut(s) | 746 |
| BbsI | GAAGAC | 1 cut(s) | 160 |
| Bbv12I | GWGCWC | 2 cut(s) | 450, 746 |
| BbvI | GCAGC | 1 cut(s) | 611 |
| BccI | CCATC | 2 cut(s) | 65, 643 |
| BceAI | ACGGC | 2 cut(s) | 495, 583 |
| BcoDI | GTCTC | 2 cut(s) | 37, 674 |
| BfmI | CTRYAG | 1 cut(s) | 265 |
| BisI | GCNGC | 2 cut(s) | 513, 625 |
| BlpI | GCTNAGC | 1 cut(s) | 100 |
| BlsI | GCNGC | 2 cut(s) | 514, 626 |
| Bme18I | GGWCC | 2 cut(s) | 301, 797 |
| BmgT120I | GGNCC | 2 cut(s) | 301, 797 |
| BmiI | GGNNCC | 2 cut(s) | 303, 597 |
| BmsI | GCATC | 3 cut(s) | 96, 804, 831 |
| BpiI | GAAGAC | 1 cut(s) | 160 |
| BpmI | CTGGAG | 1 cut(s) | 627 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 100 |
| BsaBI | GATNNNNATC | 1 cut(s) | 524 |
| BsaI | GGTCTC | 1 cut(s) | 674 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 219, 407, 650, 806 |
| Bse1I | ACTGG | 2 cut(s) | 172, 427 |
| Bse3DI | GCAATG | 2 cut(s) | 279, 627 |
| Bse8I | GATNNNNATC | 1 cut(s) | 524 |
| BseGI | GGATG | 1 cut(s) | 816 |
| BseJI | GATNNNNATC | 1 cut(s) | 524 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 219, 407, 650, 806 |
| BseMI | GCAATG | 2 cut(s) | 279, 627 |
| BseMII | CTCAG | 1 cut(s) | 114 |
| BseNI | ACTGG | 2 cut(s) | 172, 427 |
| BseRI | GAGGAG | 1 cut(s) | 608 |
| BseXI | GCAGC | 1 cut(s) | 611 |
| BsgI | GTGCAG | 1 cut(s) | 602 |
| Bsh1236I | CGCG | 1 cut(s) | 515 |
| BshFI | GGCC | 1 cut(s) | 194 |
| BsiHKAI | GWGCWC | 2 cut(s) | 450, 746 |
| BslFI | GGGAC | 3 cut(s) | 120, 195, 287 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 219, 407, 650, 806 |
| BsmAI | GTCTC | 2 cut(s) | 37, 674 |
| BsmFI | GGGAC | 3 cut(s) | 120, 195, 287 |
| BsnI | GGCC | 1 cut(s) | 194 |
| Bso31I | GGTCTC | 1 cut(s) | 674 |
| Bsp1286I | GDGCHC | 2 cut(s) | 450, 746 |
| Bsp1407I | TGTACA | 2 cut(s) | 403, 675 |
| Bsp143I | GATC | 5 cut(s) | 32, 115, 436, 454, 774 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 100 |
| BspACI | CCGC | 2 cut(s) | 97, 513 |
| BspANI | GGCC | 1 cut(s) | 194 |
| BspCNI | CTCAG | 1 cut(s) | 113 |
| BspFNI | CGCG | 1 cut(s) | 515 |
| BspLI | GGNNCC | 2 cut(s) | 303, 597 |
| BspPI | GGATC | 4 cut(s) | 40, 123, 444, 769 |
| BspTNI | GGTCTC | 1 cut(s) | 674 |
| BsrBI | CCGCTC | 1 cut(s) | 99 |
| BsrDI | GCAATG | 2 cut(s) | 279, 627 |
| BsrGI | TGTACA | 2 cut(s) | 403, 675 |
| BsrI | ACTGG | 2 cut(s) | 172, 427 |
| BssMI | GATC | 5 cut(s) | 32, 115, 436, 454, 774 |
| Bst4CI | ACNGT | 4 cut(s) | 50, 134, 467, 785 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 638 |
| BstAUI | TGTACA | 2 cut(s) | 403, 675 |
| BstDEI | CTNAG | 1 cut(s) | 100 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 405 |
| BstF5I | GGATG | 1 cut(s) | 816 |
| BstFNI | CGCG | 1 cut(s) | 515 |
| BstKTI | GATC | 5 cut(s) | 35, 118, 439, 457, 777 |
| BstMAI | GTCTC | 2 cut(s) | 37, 674 |
| BstMBI | GATC | 5 cut(s) | 32, 115, 436, 454, 774 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 638 |
| BstNSI | RCATGY | 1 cut(s) | 240 |
| BstSFI | CTRYAG | 1 cut(s) | 265 |
| BstUI | CGCG | 1 cut(s) | 515 |
| BstV1I | GCAGC | 1 cut(s) | 611 |
| BstV2I | GAAGAC | 1 cut(s) | 160 |
| BstX2I | RGATCY | 3 cut(s) | 32, 115, 436 |
| BstYI | RGATCY | 3 cut(s) | 32, 115, 436 |
| BsuRI | GGCC | 1 cut(s) | 194 |
| BtgZI | GCGATG | 2 cut(s) | 119, 530 |
| BtsCI | GGATG | 1 cut(s) | 816 |
| BtsI | GCAGTG | 1 cut(s) | 590 |
| BtsIMutI | CAGTG | 3 cut(s) | 46, 179, 590 |
| Cfr13I | GGNCC | 2 cut(s) | 301, 797 |
| Csp6I | GTAC | 3 cut(s) | 404, 468, 676 |
| CviAII | CATG | 5 cut(s) | 237, 306, 365, 390, 769 |
| CviJI | RGCY | 7 cut(s) | 194, 426, 482, 512, 598, 624, 744 |
| CviKI_1 | RGCY | 7 cut(s) | 194, 426, 482, 512, 598, 624, 744 |
| CviQI | GTAC | 3 cut(s) | 404, 468, 676 |
| DdeI | CTNAG | 1 cut(s) | 100 |
| DpnI | GATC | 5 cut(s) | 34, 117, 438, 456, 776 |
| DpnII | GATC | 5 cut(s) | 32, 115, 436, 454, 774 |
| Ecl136II | GAGCTC | 1 cut(s) | 744 |
| Eco24I | GRGCYC | 1 cut(s) | 746 |
| Eco31I | GGTCTC | 1 cut(s) | 674 |
| Eco47I | GGWCC | 2 cut(s) | 301, 797 |
| Eco53kI | GAGCTC | 1 cut(s) | 744 |
| EcoICRI | GAGCTC | 1 cut(s) | 744 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 405 |
| EcoT38I | GRGCYC | 1 cut(s) | 746 |
| FaeI | CATG | 5 cut(s) | 240, 309, 368, 393, 772 |
| FaqI | GGGAC | 3 cut(s) | 120, 195, 287 |
| FatI | CATG | 5 cut(s) | 236, 305, 364, 389, 768 |
| FauI | CCCGC | 1 cut(s) | 104 |
| FauNDI | CATATG | 1 cut(s) | 664 |
| Fnu4HI | GCNGC | 2 cut(s) | 513, 625 |
| FokI | GGATG | 1 cut(s) | 823 |
| FriOI | GRGCYC | 1 cut(s) | 746 |
| Fsp4HI | GCNGC | 2 cut(s) | 513, 625 |
| GluI | GCNGC | 2 cut(s) | 513, 625 |
| GsuI | CTGGAG | 1 cut(s) | 627 |
| HaeIII | GGCC | 1 cut(s) | 194 |
| Hin1II | CATG | 5 cut(s) | 240, 309, 368, 393, 772 |
| HinfI | GANTC | 4 cut(s) | 160, 290, 356, 693 |
| HphI | GGTGA | 2 cut(s) | 705, 733 |
| Hpy166II | GTNNAC | 1 cut(s) | 678 |
| Hpy188I | TCNGA | 1 cut(s) | 67 |
| Hpy188III | TCNNGA | 4 cut(s) | 119, 128, 287, 644 |
| Hpy8I | GTNNAC | 1 cut(s) | 678 |
| HpyAV | CCTTC | 2 cut(s) | 69, 683 |
| HpyCH4III | ACNGT | 4 cut(s) | 50, 134, 467, 785 |
| HpyCH4V | TGCA | 8 cut(s) | 236, 330, 378, 414, 583, 627, 632, 822 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 638 |
| HpyF3I | CTNAG | 1 cut(s) | 100 |
| Hsp92II | CATG | 5 cut(s) | 240, 309, 368, 393, 772 |
| Kzo9I | GATC | 5 cut(s) | 32, 115, 436, 454, 774 |
| LmnI | GCTCC | 4 cut(s) | 398, 595, 646, 749 |
| Lsp1109I | GCAGC | 1 cut(s) | 611 |
| LweI | GCATC | 3 cut(s) | 96, 804, 831 |
| MaeIII | GTNAC | 1 cut(s) | 694 |
| MalI | GATC | 5 cut(s) | 34, 117, 438, 456, 776 |
| MbiI | CCGCTC | 1 cut(s) | 99 |
| MboI | GATC | 5 cut(s) | 32, 115, 436, 454, 774 |
| MboII | GAAGA | 7 cut(s) | 45, 54, 160, 169, 192, 382, 574 |
| MflI | RGATCY | 3 cut(s) | 32, 115, 436 |
| MhlI | GDGCHC | 2 cut(s) | 450, 746 |
| MluCI | AATT | 3 cut(s) | 215, 415, 543 |
| MlyI | GAGTC | 1 cut(s) | 702 |
| MmeI | TCCRAC | 1 cut(s) | 232 |
| MnlI | CCTC | 3 cut(s) | 213, 586, 789 |
| MseI | TTAA | 1 cut(s) | 735 |
| MvnI | CGCG | 1 cut(s) | 515 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 638 |
| NdeI | CATATG | 1 cut(s) | 664 |
| NdeII | GATC | 5 cut(s) | 32, 115, 436, 454, 774 |
| NlaIII | CATG | 5 cut(s) | 240, 309, 368, 393, 772 |
| NlaIV | GGNNCC | 2 cut(s) | 303, 597 |
| NmuCI | GTSAC | 1 cut(s) | 694 |
| NspI | RCATGY | 1 cut(s) | 240 |
| PfeI | GAWTC | 3 cut(s) | 160, 290, 356 |
| PkrI | GCNGC | 2 cut(s) | 514, 626 |
| PleI | GAGTC | 1 cut(s) | 701 |
| PpsI | GAGTC | 1 cut(s) | 701 |
| Psp124BI | GAGCTC | 1 cut(s) | 746 |
| PspN4I | GGNNCC | 2 cut(s) | 303, 597 |
| PspPI | GGNCC | 2 cut(s) | 301, 797 |
| PsuI | RGATCY | 3 cut(s) | 32, 115, 436 |
| RsaI | GTAC | 3 cut(s) | 405, 469, 677 |
| RsaNI | GTAC | 3 cut(s) | 404, 468, 676 |
| SacI | GAGCTC | 1 cut(s) | 746 |
| SaqAI | TTAA | 1 cut(s) | 735 |
| SatI | GCNGC | 2 cut(s) | 513, 625 |
| Sau3AI | GATC | 5 cut(s) | 32, 115, 436, 454, 774 |
| Sau96I | GGNCC | 2 cut(s) | 301, 797 |
| SchI | GAGTC | 1 cut(s) | 702 |
| SduI | GDGCHC | 2 cut(s) | 450, 746 |
| SetI | ASST | 8 cut(s) | 328, 412, 475, 626, 723, 732, 746, 757 |
| SfaNI | GCATC | 3 cut(s) | 96, 804, 831 |
| SfcI | CTRYAG | 1 cut(s) | 265 |
| SinI | GGWCC | 2 cut(s) | 301, 797 |
| Sse9I | AATT | 3 cut(s) | 215, 415, 543 |
| SsiI | CCGC | 2 cut(s) | 97, 513 |
| SstI | GAGCTC | 1 cut(s) | 746 |
| TaaI | ACNGT | 4 cut(s) | 50, 134, 467, 785 |
| TaqI | TCGA | 1 cut(s) | 129 |
| TasI | AATT | 3 cut(s) | 215, 415, 543 |
| TatI | WGTACW | 3 cut(s) | 403, 467, 675 |
| TauI | GCSGC | 1 cut(s) | 515 |
| TfiI | GAWTC | 3 cut(s) | 160, 290, 356 |
| Tru1I | TTAA | 1 cut(s) | 735 |
| Tru9I | TTAA | 1 cut(s) | 735 |
| TscAI | CASTG | 3 cut(s) | 53, 179, 590 |
| TseFI | GTSAC | 1 cut(s) | 694 |
| TseI | GCWGC | 1 cut(s) | 624 |
| Tsp45I | GTSAC | 1 cut(s) | 694 |
| TspDTI | ATGAA | 2 cut(s) | 514, 757 |
| TspGWI | ACGGA | 1 cut(s) | 128 |
| TspRI | CASTG | 3 cut(s) | 53, 179, 590 |
| VpaK11BI | GGWCC | 2 cut(s) | 301, 797 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 405 |
| XceI | RCATGY | 1 cut(s) | 240 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 179 |