E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 466 |
| AccIII | TCCGGA | 1 cut(s) | 53 |
| AclI | AACGTT | 1 cut(s) | 279 |
| AclWI | GGATC | 2 cut(s) | 45, 58 |
| AcsI | RAATTY | 1 cut(s) | 454 |
| AcuI | CTGAAG | 1 cut(s) | 217 |
| AfaI | GTAC | 2 cut(s) | 358, 448 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 18 |
| AgsI | TTSAA | 5 cut(s) | 73, 210, 313, 386, 428 |
| AluBI | AGCT | 2 cut(s) | 286, 327 |
| AluI | AGCT | 2 cut(s) | 286, 327 |
| AlwI | GGATC | 2 cut(s) | 45, 58 |
| Aor13HI | TCCGGA | 1 cut(s) | 53 |
| AoxI | GGCC | 1 cut(s) | 412 |
| ApeKI | GCWGC | 1 cut(s) | 192 |
| ApoI | RAATTY | 1 cut(s) | 454 |
| AspS9I | GGNCC | 1 cut(s) | 412 |
| BamHI | GGATCC | 1 cut(s) | 50 |
| BauI | CACGAG | 1 cut(s) | 185 |
| BbsI | GAAGAC | 1 cut(s) | 150 |
| BbvCI | CCTCAGC | 1 cut(s) | 78 |
| BbvI | GCAGC | 1 cut(s) | 179 |
| BccI | CCATC | 1 cut(s) | 175 |
| BclI | TGATCA | 1 cut(s) | 241 |
| BisI | GCNGC | 1 cut(s) | 193 |
| BlsI | GCNGC | 1 cut(s) | 194 |
| BmgT120I | GGNCC | 1 cut(s) | 412 |
| BmiI | GGNNCC | 1 cut(s) | 52 |
| BmrI | ACTGGG | 1 cut(s) | 296 |
| BmsI | GCATC | 1 cut(s) | 94 |
| BmuI | ACTGGG | 1 cut(s) | 296 |
| BpiI | GAAGAC | 1 cut(s) | 150 |
| BpmI | CTGGAG | 1 cut(s) | 198 |
| Bpu10I | CCTNAGC | 1 cut(s) | 78 |
| BsaWI | WCCGGW | 1 cut(s) | 53 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 18 |
| Bse1I | ACTGG | 1 cut(s) | 302 |
| BseAI | TCCGGA | 1 cut(s) | 53 |
| BseGI | GGATG | 2 cut(s) | 8, 145 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 18 |
| BseMII | CTCAG | 2 cut(s) | 27, 69 |
| BseNI | ACTGG | 1 cut(s) | 302 |
| BseXI | GCAGC | 1 cut(s) | 179 |
| BshFI | GGCC | 1 cut(s) | 414 |
| BsiSI | CCGG | 1 cut(s) | 54 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 18 |
| BsmI | GAATGC | 1 cut(s) | 79 |
| BsnI | GGCC | 1 cut(s) | 414 |
| Bsp13I | TCCGGA | 1 cut(s) | 53 |
| Bsp143I | GATC | 3 cut(s) | 50, 241, 433 |
| BspANI | GGCC | 1 cut(s) | 414 |
| BspCNI | CTCAG | 2 cut(s) | 26, 70 |
| BspEI | TCCGGA | 1 cut(s) | 53 |
| BspLI | GGNNCC | 1 cut(s) | 52 |
| BspPI | GGATC | 2 cut(s) | 45, 58 |
| BsrI | ACTGG | 1 cut(s) | 302 |
| BssMI | GATC | 3 cut(s) | 50, 241, 433 |
| BssSI | CACGAG | 1 cut(s) | 185 |
| Bst2BI | CACGAG | 1 cut(s) | 185 |
| Bst4CI | ACNGT | 1 cut(s) | 363 |
| BstDEI | CTNAG | 2 cut(s) | 13, 78 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 16 |
| BstF5I | GGATG | 2 cut(s) | 8, 145 |
| BstKTI | GATC | 3 cut(s) | 53, 244, 436 |
| BstMBI | GATC | 3 cut(s) | 50, 241, 433 |
| BstV1I | GCAGC | 1 cut(s) | 179 |
| BstV2I | GAAGAC | 1 cut(s) | 150 |
| BstX2I | RGATCY | 1 cut(s) | 50 |
| BstYI | RGATCY | 1 cut(s) | 50 |
| BsuRI | GGCC | 1 cut(s) | 414 |
| BtsCI | GGATG | 2 cut(s) | 8, 145 |
| BtsIMutI | CAGTG | 1 cut(s) | 359 |
| Cfr13I | GGNCC | 1 cut(s) | 412 |
| Csp6I | GTAC | 2 cut(s) | 357, 447 |
| CviAII | CATG | 2 cut(s) | 63, 136 |
| CviJI | RGCY | 4 cut(s) | 192, 286, 327, 414 |
| CviKI_1 | RGCY | 4 cut(s) | 192, 286, 327, 414 |
| CviQI | GTAC | 2 cut(s) | 357, 447 |
| DdeI | CTNAG | 2 cut(s) | 13, 78 |
| DpnI | GATC | 3 cut(s) | 52, 243, 435 |
| DpnII | GATC | 3 cut(s) | 50, 241, 433 |
| Eco57I | CTGAAG | 1 cut(s) | 217 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 16 |
| FaeI | CATG | 2 cut(s) | 66, 139 |
| FaiI | YATR | 7 cut(s) | 64, 137, 223, 273, 351, 392, 466 |
| FatI | CATG | 2 cut(s) | 62, 135 |
| FbaI | TGATCA | 1 cut(s) | 241 |
| Fnu4HI | GCNGC | 1 cut(s) | 193 |
| FokI | GGATG | 1 cut(s) | 152 |
| Fsp4HI | GCNGC | 1 cut(s) | 193 |
| GluI | GCNGC | 1 cut(s) | 193 |
| GsuI | CTGGAG | 1 cut(s) | 198 |
| HaeIII | GGCC | 1 cut(s) | 414 |
| HapII | CCGG | 1 cut(s) | 54 |
| Hin1II | CATG | 2 cut(s) | 66, 139 |
| HinfI | GANTC | 4 cut(s) | 26, 86, 251, 428 |
| HpaII | CCGG | 1 cut(s) | 54 |
| Hpy166II | GTNNAC | 2 cut(s) | 184, 359 |
| Hpy188I | TCNGA | 6 cut(s) | 16, 25, 34, 91, 341, 433 |
| Hpy188III | TCNNGA | 3 cut(s) | 54, 185, 425 |
| Hpy8I | GTNNAC | 2 cut(s) | 184, 359 |
| HpyCH4III | ACNGT | 1 cut(s) | 363 |
| HpyCH4IV | ACGT | 2 cut(s) | 279, 407 |
| HpyCH4V | TGCA | 3 cut(s) | 107, 195, 440 |
| HpyF3I | CTNAG | 2 cut(s) | 13, 78 |
| HpySE526I | ACGT | 2 cut(s) | 279, 407 |
| Hsp92II | CATG | 2 cut(s) | 66, 139 |
| Kpn2I | TCCGGA | 1 cut(s) | 53 |
| Ksp22I | TGATCA | 1 cut(s) | 241 |
| Kzo9I | GATC | 3 cut(s) | 50, 241, 433 |
| LpnPI | CCDG | 5 cut(s) | 67, 162, 246, 281, 315 |
| Lsp1109I | GCAGC | 1 cut(s) | 179 |
| LweI | GCATC | 1 cut(s) | 94 |
| MaeII | ACGT | 2 cut(s) | 279, 407 |
| MaeIII | GTNAC | 2 cut(s) | 304, 403 |
| MalI | GATC | 3 cut(s) | 52, 243, 435 |
| MboI | GATC | 3 cut(s) | 50, 241, 433 |
| MboII | GAAGA | 8 cut(s) | 50, 69, 113, 128, 131, 134, 155, 198 |
| MflI | RGATCY | 1 cut(s) | 50 |
| MluCI | AATT | 3 cut(s) | 196, 441, 454 |
| MnlI | CCTC | 6 cut(s) | 22, 73, 91, 181, 347, 380 |
| MroI | TCCGGA | 1 cut(s) | 53 |
| MspI | CCGG | 1 cut(s) | 54 |
| Mva1269I | GAATGC | 1 cut(s) | 79 |
| NdeII | GATC | 3 cut(s) | 50, 241, 433 |
| NlaIII | CATG | 2 cut(s) | 66, 139 |
| NlaIV | GGNNCC | 1 cut(s) | 52 |
| NmuCI | GTSAC | 1 cut(s) | 403 |
| PctI | GAATGC | 1 cut(s) | 79 |
| PfeI | GAWTC | 4 cut(s) | 26, 86, 251, 428 |
| PkrI | GCNGC | 1 cut(s) | 194 |
| PsiI | TTATAA | 1 cut(s) | 466 |
| Psp1406I | AACGTT | 1 cut(s) | 279 |
| PspN4I | GGNNCC | 1 cut(s) | 52 |
| PspPI | GGNCC | 1 cut(s) | 412 |
| PsuI | RGATCY | 1 cut(s) | 50 |
| RsaI | GTAC | 2 cut(s) | 358, 448 |
| RsaNI | GTAC | 2 cut(s) | 357, 447 |
| SatI | GCNGC | 1 cut(s) | 193 |
| Sau3AI | GATC | 3 cut(s) | 50, 241, 433 |
| Sau96I | GGNCC | 1 cut(s) | 412 |
| SetI | ASST | 8 cut(s) | 23, 84, 265, 282, 288, 329, 358, 410 |
| SfaNI | GCATC | 1 cut(s) | 94 |
| Sse9I | AATT | 3 cut(s) | 196, 441, 454 |
| TaaI | ACNGT | 1 cut(s) | 363 |
| TaiI | ACGT | 2 cut(s) | 282, 410 |
| TasI | AATT | 3 cut(s) | 196, 441, 454 |
| TfiI | GAWTC | 4 cut(s) | 26, 86, 251, 428 |
| TscAI | CASTG | 1 cut(s) | 366 |
| TseFI | GTSAC | 1 cut(s) | 403 |
| TseI | GCWGC | 1 cut(s) | 192 |
| Tsp45I | GTSAC | 1 cut(s) | 403 |
| TspDTI | ATGAA | 2 cut(s) | 51, 156 |
| TspRI | CASTG | 1 cut(s) | 366 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 16 |
| XapI | RAATTY | 1 cut(s) | 454 |