E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RraA-like | PF03737 | 86 - 239 | 6.9e-46 | Aldolase/RraA |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 308 |
| Acc36I | ACCTGC | 1 cut(s) | 312 |
| AccI | GTMKAC | 1 cut(s) | 104 |
| AccII | CGCG | 1 cut(s) | 675 |
| AciI | CCGC | 3 cut(s) | 19, 180, 673 |
| AclI | AACGTT | 1 cut(s) | 393 |
| AclWI | GGATC | 1 cut(s) | 664 |
| AcsI | RAATTY | 1 cut(s) | 487 |
| AcuI | CTGAAG | 1 cut(s) | 282 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 192, 679 |
| AflIII | ACRYGT | 1 cut(s) | 640 |
| AjnI | CCWGG | 1 cut(s) | 113 |
| AluBI | AGCT | 4 cut(s) | 12, 284, 409, 590 |
| AluI | AGCT | 4 cut(s) | 12, 284, 409, 590 |
| Alw21I | GWGCWC | 1 cut(s) | 14 |
| Alw26I | GTCTC | 1 cut(s) | 294 |
| AlwI | GGATC | 1 cut(s) | 664 |
| AoxI | GGCC | 4 cut(s) | 134, 220, 358, 625 |
| ApeKI | GCWGC | 3 cut(s) | 39, 177, 540 |
| ApoI | RAATTY | 1 cut(s) | 487 |
| AspS9I | GGNCC | 2 cut(s) | 117, 359 |
| AsuHPI | GGTGA | 2 cut(s) | 17, 595 |
| AvaII | GGWCC | 1 cut(s) | 117 |
| AxyI | CCTNAGG | 1 cut(s) | 224 |
| BanII | GRGCYC | 1 cut(s) | 14 |
| Bbv12I | GWGCWC | 1 cut(s) | 14 |
| BbvI | GCAGC | 3 cut(s) | 51, 189, 527 |
| BccI | CCATC | 4 cut(s) | 225, 443, 510, 698 |
| BciT130I | CCWGG | 1 cut(s) | 115 |
| BcoDI | GTCTC | 1 cut(s) | 294 |
| BfuAI | ACCTGC | 1 cut(s) | 312 |
| BisI | GCNGC | 4 cut(s) | 40, 178, 181, 541 |
| BlsI | GCNGC | 4 cut(s) | 41, 179, 182, 542 |
| Bme1390I | CCNGG | 1 cut(s) | 115 |
| Bme18I | GGWCC | 1 cut(s) | 117 |
| BmgT120I | GGNCC | 2 cut(s) | 117, 359 |
| BmiI | GGNNCC | 3 cut(s) | 184, 361, 664 |
| BmrFI | CCNGG | 1 cut(s) | 115 |
| BmsI | GCATC | 2 cut(s) | 605, 717 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 396, 428 |
| BpmI | CTGGAG | 1 cut(s) | 64 |
| BsaI | GGTCTC | 1 cut(s) | 294 |
| BsaJI | CCNNGG | 2 cut(s) | 217, 628 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 192, 679 |
| Bse1I | ACTGG | 1 cut(s) | 81 |
| Bse21I | CCTNAGG | 1 cut(s) | 224 |
| Bse3DI | GCAATG | 1 cut(s) | 654 |
| BseBI | CCWGG | 1 cut(s) | 115 |
| BseDI | CCNNGG | 2 cut(s) | 217, 628 |
| BseGI | GGATG | 4 cut(s) | 521, 575, 601, 708 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 192, 679 |
| BseMI | GCAATG | 1 cut(s) | 654 |
| BseMII | CTCAG | 3 cut(s) | 122, 215, 369 |
| BseNI | ACTGG | 1 cut(s) | 81 |
| BseRI | GAGGAG | 1 cut(s) | 241 |
| BseXI | GCAGC | 3 cut(s) | 51, 189, 527 |
| Bsh1236I | CGCG | 1 cut(s) | 675 |
| BshFI | GGCC | 4 cut(s) | 136, 222, 360, 627 |
| BsiHKAI | GWGCWC | 1 cut(s) | 14 |
| BslFI | GGGAC | 2 cut(s) | 69, 507 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 192, 679 |
| BsmAI | GTCTC | 1 cut(s) | 294 |
| BsmFI | GGGAC | 2 cut(s) | 69, 507 |
| BsmI | GAATGC | 1 cut(s) | 350 |
| BsnI | GGCC | 4 cut(s) | 136, 222, 360, 627 |
| Bso31I | GGTCTC | 1 cut(s) | 294 |
| Bsp1286I | GDGCHC | 1 cut(s) | 14 |
| Bsp143I | GATC | 3 cut(s) | 561, 648, 669 |
| Bsp19I | CCATGG | 1 cut(s) | 628 |
| BspACI | CCGC | 3 cut(s) | 19, 180, 673 |
| BspANI | GGCC | 4 cut(s) | 136, 222, 360, 627 |
| BspCNI | CTCAG | 3 cut(s) | 121, 216, 368 |
| BspFNI | CGCG | 1 cut(s) | 675 |
| BspLI | GGNNCC | 3 cut(s) | 184, 361, 664 |
| BspMI | ACCTGC | 1 cut(s) | 312 |
| BspPI | GGATC | 1 cut(s) | 664 |
| BspTNI | GGTCTC | 1 cut(s) | 294 |
| BsrDI | GCAATG | 1 cut(s) | 654 |
| BsrI | ACTGG | 1 cut(s) | 81 |
| BssECI | CCNNGG | 2 cut(s) | 217, 628 |
| BssMI | GATC | 3 cut(s) | 561, 648, 669 |
| BssT1I | CCWWGG | 2 cut(s) | 217, 628 |
| Bst2UI | CCWGG | 1 cut(s) | 115 |
| Bst4CI | ACNGT | 3 cut(s) | 61, 373, 498 |
| Bst6I | CTCTTC | 1 cut(s) | 427 |
| BstDEI | CTNAG | 5 cut(s) | 8, 108, 224, 250, 355 |
| BstDSI | CCRYGG | 1 cut(s) | 628 |
| BstF5I | GGATG | 4 cut(s) | 521, 575, 601, 708 |
| BstFNI | CGCG | 1 cut(s) | 675 |
| BstKTI | GATC | 3 cut(s) | 564, 651, 672 |
| BstMAI | GTCTC | 1 cut(s) | 294 |
| BstMBI | GATC | 3 cut(s) | 561, 648, 669 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 18, 251, 313 |
| BstNI | CCWGG | 1 cut(s) | 115 |
| BstNSI | RCATGY | 1 cut(s) | 644 |
| BstSCI | CCNGG | 1 cut(s) | 113 |
| BstUI | CGCG | 1 cut(s) | 675 |
| BstV1I | GCAGC | 3 cut(s) | 51, 189, 527 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 218 |
| Bsu36I | CCTNAGG | 1 cut(s) | 224 |
| BsuRI | GGCC | 4 cut(s) | 136, 222, 360, 627 |
| BtgI | CCRYGG | 1 cut(s) | 628 |
| BtsCI | GGATG | 4 cut(s) | 521, 575, 601, 708 |
| BtsIMutI | CAGTG | 2 cut(s) | 5, 369 |
| BveI | ACCTGC | 1 cut(s) | 312 |
| Cfr13I | GGNCC | 2 cut(s) | 117, 359 |
| CviAII | CATG | 6 cut(s) | 192, 463, 511, 607, 629, 641 |
| DdeI | CTNAG | 5 cut(s) | 8, 108, 224, 250, 355 |
| DpnI | GATC | 3 cut(s) | 563, 650, 671 |
| DpnII | GATC | 3 cut(s) | 561, 648, 669 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 308 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 308 |
| Eam1104I | CTCTTC | 1 cut(s) | 427 |
| EarI | CTCTTC | 1 cut(s) | 427 |
| EciI | GGCGGA | 1 cut(s) | 8 |
| Ecl136II | GAGCTC | 1 cut(s) | 12 |
| Eco130I | CCWWGG | 2 cut(s) | 217, 628 |
| Eco24I | GRGCYC | 1 cut(s) | 14 |
| Eco31I | GGTCTC | 1 cut(s) | 294 |
| Eco47I | GGWCC | 1 cut(s) | 117 |
| Eco53kI | GAGCTC | 1 cut(s) | 12 |
| Eco57I | CTGAAG | 1 cut(s) | 282 |
| Eco81I | CCTNAGG | 1 cut(s) | 224 |
| EcoICRI | GAGCTC | 1 cut(s) | 12 |
| EcoO109I | RGGNCCY | 1 cut(s) | 359 |
| EcoRII | CCWGG | 1 cut(s) | 113 |
| EcoT14I | CCWWGG | 2 cut(s) | 217, 628 |
| EcoT38I | GRGCYC | 1 cut(s) | 14 |
| ErhI | CCWWGG | 2 cut(s) | 217, 628 |
| FaeI | CATG | 6 cut(s) | 195, 466, 514, 610, 632, 644 |
| FaqI | GGGAC | 2 cut(s) | 69, 507 |
| FatI | CATG | 6 cut(s) | 191, 462, 510, 606, 628, 640 |
| FblI | GTMKAC | 1 cut(s) | 104 |
| Fnu4HI | GCNGC | 4 cut(s) | 40, 178, 181, 541 |
| FokI | GGATG | 4 cut(s) | 528, 582, 588, 695 |
| FriOI | GRGCYC | 1 cut(s) | 14 |
| Fsp4HI | GCNGC | 4 cut(s) | 40, 178, 181, 541 |
| GluI | GCNGC | 4 cut(s) | 40, 178, 181, 541 |
| GsuI | CTGGAG | 1 cut(s) | 64 |
| HaeIII | GGCC | 4 cut(s) | 136, 222, 360, 627 |
| Hin1II | CATG | 6 cut(s) | 195, 466, 514, 610, 632, 644 |
| HphI | GGTGA | 2 cut(s) | 17, 595 |
| Hpy166II | GTNNAC | 1 cut(s) | 105 |
| Hpy188I | TCNGA | 4 cut(s) | 203, 330, 648, 727 |
| Hpy188III | TCNNGA | 1 cut(s) | 413 |
| Hpy8I | GTNNAC | 1 cut(s) | 105 |
| HpyAV | CCTTC | 2 cut(s) | 32, 671 |
| HpyCH4III | ACNGT | 3 cut(s) | 61, 373, 498 |
| HpyCH4IV | ACGT | 1 cut(s) | 393 |
| HpyCH4V | TGCA | 2 cut(s) | 543, 659 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 18, 251, 313 |
| HpyF3I | CTNAG | 5 cut(s) | 8, 108, 224, 250, 355 |
| HpySE526I | ACGT | 1 cut(s) | 393 |
| Hsp92II | CATG | 6 cut(s) | 195, 466, 514, 610, 632, 644 |
| Kzo9I | GATC | 3 cut(s) | 561, 648, 669 |
| LmnI | GCTCC | 1 cut(s) | 188 |
| Lsp1109I | GCAGC | 3 cut(s) | 51, 189, 527 |
| LweI | GCATC | 2 cut(s) | 605, 717 |
| MaeII | ACGT | 1 cut(s) | 393 |
| MaeIII | GTNAC | 1 cut(s) | 169 |
| MalI | GATC | 3 cut(s) | 563, 650, 671 |
| MboI | GATC | 3 cut(s) | 561, 648, 669 |
| MboII | GAAGA | 2 cut(s) | 56, 444 |
| MhlI | GDGCHC | 1 cut(s) | 14 |
| MluCI | AATT | 2 cut(s) | 487, 728 |
| MmeI | TCCRAC | 2 cut(s) | 460, 639 |
| MseI | TTAA | 1 cut(s) | 375 |
| MspA1I | CMGCKG | 1 cut(s) | 180 |
| MspR9I | CCNGG | 1 cut(s) | 115 |
| Mva1269I | GAATGC | 1 cut(s) | 350 |
| MvaI | CCWGG | 1 cut(s) | 115 |
| MvnI | CGCG | 1 cut(s) | 675 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 18, 251, 313 |
| NcoI | CCATGG | 1 cut(s) | 628 |
| NdeII | GATC | 3 cut(s) | 561, 648, 669 |
| NlaIII | CATG | 6 cut(s) | 195, 466, 514, 610, 632, 644 |
| NlaIV | GGNNCC | 3 cut(s) | 184, 361, 664 |
| NmeAIII | GCCGAG | 1 cut(s) | 112 |
| NspI | RCATGY | 1 cut(s) | 644 |
| PciI | ACATGT | 1 cut(s) | 640 |
| PctI | GAATGC | 1 cut(s) | 350 |
| PflFI | GACNNNGTC | 1 cut(s) | 342 |
| PfoI | TCCNGGA | 1 cut(s) | 113 |
| PkrI | GCNGC | 4 cut(s) | 41, 179, 182, 542 |
| PscI | ACATGT | 1 cut(s) | 640 |
| Psp124BI | GAGCTC | 1 cut(s) | 14 |
| Psp1406I | AACGTT | 1 cut(s) | 393 |
| Psp6I | CCWGG | 1 cut(s) | 113 |
| PspGI | CCWGG | 1 cut(s) | 113 |
| PspN4I | GGNNCC | 3 cut(s) | 184, 361, 664 |
| PspPI | GGNCC | 2 cut(s) | 117, 359 |
| PsyI | GACNNNGTC | 1 cut(s) | 342 |
| SacI | GAGCTC | 1 cut(s) | 14 |
| SaqAI | TTAA | 1 cut(s) | 375 |
| SatI | GCNGC | 4 cut(s) | 40, 178, 181, 541 |
| Sau3AI | GATC | 3 cut(s) | 561, 648, 669 |
| Sau96I | GGNCC | 2 cut(s) | 117, 359 |
| ScrFI | CCNGG | 1 cut(s) | 115 |
| SduI | GDGCHC | 1 cut(s) | 14 |
| SfaNI | GCATC | 2 cut(s) | 605, 717 |
| SinI | GGWCC | 1 cut(s) | 117 |
| Sse9I | AATT | 2 cut(s) | 487, 728 |
| SsiI | CCGC | 3 cut(s) | 19, 180, 673 |
| SspI | AATATT | 1 cut(s) | 324 |
| SstI | GAGCTC | 1 cut(s) | 14 |
| StyD4I | CCNGG | 1 cut(s) | 113 |
| StyI | CCWWGG | 2 cut(s) | 217, 628 |
| TaaI | ACNGT | 3 cut(s) | 61, 373, 498 |
| TaiI | ACGT | 1 cut(s) | 396 |
| TaqI | TCGA | 2 cut(s) | 346, 414 |
| TasI | AATT | 2 cut(s) | 487, 728 |
| TauI | GCSGC | 1 cut(s) | 183 |
| Tru1I | TTAA | 1 cut(s) | 375 |
| Tru9I | TTAA | 1 cut(s) | 375 |
| TscAI | CASTG | 2 cut(s) | 12, 376 |
| TseI | GCWGC | 3 cut(s) | 39, 177, 540 |
| TspDTI | ATGAA | 1 cut(s) | 623 |
| TspRI | CASTG | 2 cut(s) | 12, 376 |
| Tth111I | GACNNNGTC | 1 cut(s) | 342 |
| VpaK11BI | GGWCC | 1 cut(s) | 117 |
| XapI | RAATTY | 1 cut(s) | 487 |
| XceI | RCATGY | 1 cut(s) | 644 |
| XmiI | GTMKAC | 1 cut(s) | 104 |