Rroxscaffold_7G00212370

ubiquitin-dependent protein catabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000395
Physical Location & Seq
Forward (+)
62823619 .. 62828401
4783 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00212370.1

Sequence Viewer

Length: 2100 bp
ATGGTGAGACGAAGTCGACTTTTTGGTGATATTGAAGATGATGAAGGTGTTGGAGGTTCCAGCCACCCGTTACTGAAGAGATATCGTCGAGATTTCCCTTCCATGACCTCCTGGGAAGGACAAAGAGAGGAGAGTGAGCATGATGGATCAGAAGAAGAATATCAAGAAGATGATGATGATGAACTAGAATATCAAGAAGATGAGGAAGAACTAGAATATCAAGAAGATGAGGAAGAACAAGAATTTATCGCAGATAATGGTTATGATGAAGATGTCTATATCGAAGATGAAGAGGAAGAGCCAAATTATGAACCCATCGGTGATGAACCTATTAATGTCACCTTAAACGACCCAGGAGTTTTTGACTGCCCGATTTGTTTTGAACCCTTAACCATCCCAGTGTTCCAGTGTGAAAATAATGGGCACATAGCTTGCTACTACTGCAGCTCCAAAATACACAAATGTCCATCATGTTCTAGCTCCTTTGGCTCTAGTCGTTGTCGGGTCATTGAGAAGGTCCTGGAATCAAGTACAACTTCATGTCGAAATAGCAAGTATGGCTGCAAACAAACCATGACTTATGACAAGAAAAGAGAACATGAAAAGGCATGCATGCATTTGCCTTGTTCATGCCCCCATTCTGGCTGCGACTTTGTCGCTTCGTCTAGGAACTTATACAAGCACTTTGACACTAATCATGTCAGTTCTGCGACCAAATTCAGGTACTACCGTGATTTTTCCATTACATTGAAAAAGAATGAAAGGTTTACTGTTCTTCAAGAAAGAAATGAAGGCACAATGTTTATCCTCAAGAATCGCGTCATCGAAGGTGTAGGGAATGCGGTGAGGCTTAATTGTCTTCAACCTAGCTTCATGAAGGAGTCTTACTATAAACTTGGTATTAAGACCAACGGAAATGTTCTCAGATTACAGTCTTACACTAAGAGTAGTCCATGCCAAGTTTATGATGGCCCTCCTTCTGCGATGGCTACTTTGCTCTTAATCCCTCTCGATTTTTTCGGATCAAGTGATGAGCTGTCCATCAATCTCTTTATATGGCCTAAGGGATGTTTAGCAAATCCTCAGAAACCCAAGTATGGTGGAGGTATCATTATAAACCCCGAGTTAAATGATGGGTTAAAAGGATGGACTTCTTTTGGCAAAGCAAAACTACAGCACGCAGAATCACAGGGTAACAAATTCCTCGTGGCTCATAGTCGAATTCAACCGCATGATAGCATGTCTCAAAAGGTTTACTTACGAAGTGACAAGCTCTACACATTTTCTGCTTGGATACAAGCAAGTAGTGGCAGTAGCGTTCCAATAGCAGCTATTTTCAAGACAGCTTCTGGATTTATAAGTGCTGGTGAGATTATTGCGGAATCAAATTGTTGGTCCATGCTCAAGGGTGGTCTAACTGTCAAGGCTTCAGGCGATGCCGAGCTCTATTTCGAGAGCAAGAACACTTCTGTTGAGATTTGGGTTGACAGCATCTCATTGCAACCGTTCACCAAAAAGCAATGGAAGTCTCATCAAGATCAAAGCATTGCCAATAATCGTAAAACCAAGGTGCGAATCCAAGCAGTTGATGCACAAGGCAATCCTCTACCAAATGCTACAATCTCCATCCAACAAAAGGCTCCAAGTTTCCCTTTTGGTTGTTGTATGACCAATCTCATCCTCAACAACCCTGCCCACCAAAAGTGGTTCACGTCAAGGTTCAGAGTAACAACATTTGCTAACGAAATGAAATGGTATAGCACAGAGAATGTTCAGGGACGTGAGGACTACTCAGTGCCTGATGCCATGCTTCAGTTTGCACAACAAAACAACATTGCAGTTAGAGGCCATAATGTGTTCTGGGATGATTCCCAGTACCAACTCGGTTGGGTCAAATCGCTCAATGAGCAACAACTTGAAAGTGCAACTAACAAGAGGCTAAATTCTGTTATGCAGAGATACAAGGGCAAGGTCATTGCTTGGGATGTTGTCAACGAAAATTTACATTGGAATTTCTTTGAAAGTAGGATGGGTGCAAATGCTTCAGCAATTTTTTATAACTGGGCTGTTAAAGCTGATGGAGCAACCCCTTGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914
KEGG Pathways
Metabolic & Signaling
ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310
Pfam Domains
Protein Families
PDZ

Protein Analysis

699

Amino Acids

79.41

Weight (kDa)

5.4

Isoelectric Point (pI)

51.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sina_RING PF21362 123 - 158 9.3e-09 E3 ubiquitin-protein ligase sina/sinah, RING finger
Sina_ZnF PF21361 172 - 234 8.8e-10 Sina, zinc finger
CBM_4_9 PF02018 370 - 488 1.5e-06 Carbohydrate binding domain
Glyco_hydro_10 PF00331 549 - 674 2e-25 Glycosyl hydrolase family 10
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000395)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66610 AT1G66610 AT1G66620 AT1G66630 AT1G66650 AT1G66660 AT1G66660 AT5G37870 AT5G37890 AT5G37900 AT5G37910 AT5G37930 AT5G62800 AT5G62800
fragaria_vesca FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_2g03850 FvH4_2g04470 FvH4_2g04471
malus_domestica MD09G1260200.v1.1 MD09G1260400.v1.1 MD10G1106400.v1.1
prunus_persica Prupe.3G152000_v2.0.a1 Prupe.3G152100_v2.0.a1 Prupe.3G152100_v2.0.a1 Prupe.3G152100_v2.0.a1 Prupe.8G145400_v2.0.a1 Prupe.8G145500_v2.0.a1
pyrus_communis pycom09g17480 pycom09g17490 pycom10g09160
rosa_chinensis RchiOBHm_Chr2g0111691 RchiOBHm_Chr3g0448681 RchiOBHm_Chr3g0493571 RchiOBHm_Chr6g0252861 RchiOBHm_Chr6g0252871 RchiOBHm_Chr6g0253841 RchiOBHm_Chr6g0253921 RchiOBHm_Chr6g0253941
rosa_laevigata RLG00000007595 RLG00000014953 RLG00000014955 RLG00000014957 RLG00000014958 RLG00000015058 RLG00000017917 RLG00000022703
rosa_multiflora Rmu_sc0000829.1_g000012 Rmu_sc0000829.1_g000015 Rmu_sc0000829.1_g000016 Rmu_sc0000927.1_g000006 Rmu_sc0001716.1_g000004 Rmu_sc0003921.1_g000007
rosa_roxburghii Rroxscaffold_4G00307570 Rroxscaffold_6G00391470 Rroxscaffold_6G00426970 Rroxscaffold_7G00211390 Rroxscaffold_7G00211420 Rroxscaffold_7G00211430 Rroxscaffold_7G00212350 Rroxscaffold_7G00212370
rosa_rugosa Rorug02G0175400 Rorug02G0615300 Rorug03G0262600 Rorug03G0262700 Rorug05G0539200 Rorug05G0539400 Rorug05G0548300 Rorug05G0548400 Rorug05G0548500 Rorug05G0548600
rosa_samantha Rh2BG240600 Rh3AG014100 Rh3AG311400 Rh3BG013900 Rh3BG347300 Rh3CG345400 Rh3DG347600 Rh6AG055200 Rh6AG063900 Rh6AG064600 Rh6AG064800 Rh6BG049400 Rh6BG049500 Rh6BG057700 Rh6BG058000 Rh6CG048200 Rh6CG048300 Rh6CG057600 Rh6CG057900 Rh6DG043800 Rh6DG043900
rosa_wichuraiana Rw2G017640 Rw6G005000 Rw6G005670 Rw6G005710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1115, 1358, 2058
AccI GTMKAC 1 cut(s) 16
AccII CGCG 1 cut(s) 819
AciI CCGC 3 cut(s) 842, 1229, 1379
AclWI GGATC 2 cut(s) 154, 1030
AcsI RAATTY 7 cut(s) 242, 716, 1199, 1221, 1942, 1999, 2011
AcuI CTGAAG 4 cut(s) 95, 1413, 1796, 2028
AfaI GTAC 3 cut(s) 532, 725, 1877
AfiI CCNNNNNNNGG 4 cut(s) 641, 720, 1097, 1636
AgsI TTSAA 9 cut(s) 35, 383, 751, 779, 863, 1226, 1339, 1919, 2021
AjiI CACGTC 2 cut(s) 1713, 1781
AjnI CCWGG 3 cut(s) 110, 352, 519
Alw21I GWGCWC 1 cut(s) 1446
Alw26I GTCTC 2 cut(s) 1248, 1533
AlwI GGATC 2 cut(s) 154, 1030
AlwNI CAGNNNCTG 2 cut(s) 1349, 1799
Ama87I CYCGRG 1 cut(s) 1121
AoxI GGCC 3 cut(s) 970, 1058, 1846
ApeKI GCWGC 4 cut(s) 444, 561, 645, 1328
ApoI RAATTY 7 cut(s) 242, 716, 1199, 1221, 1942, 1999, 2011
ArsI GACNNNNNNTTYG 2 cut(s) 1379, 1411
AseI ATTAAT 1 cut(s) 333
AspS9I GGNCC 3 cut(s) 517, 971, 1395
AsuHPI GGTGA 7 cut(s) 16, 38, 331, 332, 856, 1379, 1501
AvaI CYCGRG 1 cut(s) 1121
AvaII GGWCC 2 cut(s) 517, 1395
AxyI CCTNAGG 1 cut(s) 1062
BaeGI GKGCMC 1 cut(s) 426
BaeI ACNNNNGTAYC 2 cut(s) 715, 748
BanII GRGCYC 1 cut(s) 1446
BarI GAAGNNNNNNTAC 2 cut(s) 869, 901
BauI CACGAG 1 cut(s) 1205
BbsI GAAGAC 1 cut(s) 851
Bbv12I GWGCWC 1 cut(s) 1446
BbvI GCAGC 4 cut(s) 456, 548, 632, 1340
BciT130I CCWGG 3 cut(s) 112, 354, 521
BciVI GTATCC 1 cut(s) 1287
BcoDI GTCTC 2 cut(s) 1248, 1533
BfaI CTAG 6 cut(s) 185, 212, 477, 492, 666, 867
BfmI CTRYAG 2 cut(s) 442, 1172
BfuI GTATCC 1 cut(s) 1287
BisI GCNGC 4 cut(s) 445, 562, 646, 1329
BlsI GCNGC 4 cut(s) 446, 563, 647, 1330
Bme1390I CCNGG 3 cut(s) 112, 354, 521
Bme18I GGWCC 2 cut(s) 517, 1395
BmeT110I CYCGRG 1 cut(s) 1121
BmgBI CACGTC 2 cut(s) 1713, 1781
BmgT120I GGNCC 3 cut(s) 517, 971, 1395
BmiI GGNNCC 2 cut(s) 58, 1641
BmrFI CCNGG 3 cut(s) 112, 354, 521
BmrI ACTGGG 3 cut(s) 392, 1867, 2071
BmsI GCATC 4 cut(s) 1426, 1500, 1579, 1792
BmuI ACTGGG 3 cut(s) 392, 1867, 2071
BpiI GAAGAC 1 cut(s) 851
BplI GAGNNNNNCTC 2 cut(s) 1775, 1807
BpuEI CTTGAG 2 cut(s) 794, 1388
BsaJI CCNNGG 3 cut(s) 111, 352, 1566
BsaXI ACNNNNNCTCC 2 cut(s) 431, 461
Bsc4I CCNNNNNNNGG 4 cut(s) 641, 720, 1097, 1636
Bse1I ACTGG 4 cut(s) 398, 406, 1873, 2066
Bse21I CCTNAGG 1 cut(s) 1062
Bse3DI GCAATG 5 cut(s) 1496, 1526, 1545, 1833, 1974
BseBI CCWGG 3 cut(s) 112, 354, 521
BseDI CCNNGG 3 cut(s) 111, 352, 1566
BseGI GGATG 8 cut(s) 393, 1073, 1151, 1626, 1677, 1870, 1990, 2034
BseLI CCNNNNNNNGG 4 cut(s) 641, 720, 1097, 1636
BseMI GCAATG 5 cut(s) 1496, 1526, 1545, 1833, 1974
BseMII CTCAG 3 cut(s) 937, 1097, 1806
BseNI ACTGG 4 cut(s) 398, 406, 1873, 2066
BseRI GAGGAG 1 cut(s) 143
BseSI GKGCMC 1 cut(s) 426
BseXI GCAGC 4 cut(s) 456, 548, 632, 1340
Bsh1236I CGCG 1 cut(s) 819
BshFI GGCC 3 cut(s) 972, 1060, 1848
BsiHKAI GWGCWC 1 cut(s) 1446
BsiHKCI CYCGRG 1 cut(s) 1121
BslFI GGGAC 1 cut(s) 1791
BslI CCNNNNNNNGG 4 cut(s) 641, 720, 1097, 1636
BsmAI GTCTC 2 cut(s) 1248, 1533
BsmFI GGGAC 1 cut(s) 1791
BsmI GAATGC 1 cut(s) 844
BsnI GGCC 3 cut(s) 972, 1060, 1848
BsoBI CYCGRG 1 cut(s) 1121
Bsp1286I GDGCHC 2 cut(s) 426, 1446
Bsp143I GATC 3 cut(s) 146, 1022, 1537
BspACI CCGC 3 cut(s) 842, 1229, 1379
BspANI GGCC 3 cut(s) 972, 1060, 1848
BspCNI CTCAG 3 cut(s) 936, 1096, 1805
BspFNI CGCG 1 cut(s) 819
BspHI TCATGA 1 cut(s) 873
BspLI GGNNCC 2 cut(s) 58, 1641
BspMAI CTGCAG 1 cut(s) 446
BspPI GGATC 2 cut(s) 154, 1030
BspQI GCTCTTC 1 cut(s) 291
BsrDI GCAATG 5 cut(s) 1496, 1526, 1545, 1833, 1974
BsrI ACTGG 4 cut(s) 398, 406, 1873, 2066
BssECI CCNNGG 3 cut(s) 111, 352, 1566
BssMI GATC 3 cut(s) 146, 1022, 1537
BssSI CACGAG 1 cut(s) 1205
BssT1I CCWWGG 1 cut(s) 1566
Bst2BI CACGAG 1 cut(s) 1205
Bst2UI CCWGG 3 cut(s) 112, 354, 521
Bst4CI ACNGT 5 cut(s) 731, 772, 933, 1420, 1506
Bst6I CTCTTC 3 cut(s) 71, 285, 291
BstAPI GCANNNNNTGC 1 cut(s) 1589
BstC8I GCNNGC 4 cut(s) 433, 610, 614, 1179
BstDEI CTNAG 5 cut(s) 923, 942, 1062, 1083, 1792
BstF5I GGATG 8 cut(s) 393, 1073, 1151, 1626, 1677, 1870, 1990, 2034
BstFNI CGCG 1 cut(s) 819
BstKTI GATC 3 cut(s) 149, 1025, 1540
BstMAI GTCTC 2 cut(s) 1248, 1533
BstMBI GATC 3 cut(s) 146, 1022, 1537
BstMWI GCNNNNNNNGC 7 cut(s) 441, 486, 558, 1589, 1906, 2072, 2081
BstNI CCWGG 3 cut(s) 112, 354, 521
BstNSI RCATGY 3 cut(s) 612, 616, 1243
BstSCI CCNGG 3 cut(s) 110, 352, 519
BstSFI CTRYAG 2 cut(s) 442, 1172
BstSLI GKGCMC 1 cut(s) 426
BstUI CGCG 1 cut(s) 819
BstV1I GCAGC 4 cut(s) 456, 548, 632, 1340
BstV2I GAAGAC 1 cut(s) 851
Bsu36I CCTNAGG 1 cut(s) 1062
BsuI GTATCC 1 cut(s) 1287
BsuRI GGCC 3 cut(s) 972, 1060, 1848
BtgZI GCGATG 2 cut(s) 998, 1449
BtrI CACGTC 2 cut(s) 1713, 1781
BtsCI GGATG 8 cut(s) 393, 1073, 1151, 1626, 1677, 1870, 1990, 2034
BtsIMutI CAGTG 3 cut(s) 405, 413, 1800
Cac8I GCNNGC 4 cut(s) 433, 610, 614, 1179
CaiI CAGNNNCTG 2 cut(s) 1349, 1799
CciI TCATGA 1 cut(s) 873
Cfr13I GGNCC 3 cut(s) 517, 971, 1395
CseI GACGC 1 cut(s) 808
Csp6I GTAC 3 cut(s) 531, 724, 1876
CspCI CAANNNNNGTGG 2 cut(s) 1081, 1116
CviQI GTAC 3 cut(s) 531, 724, 1876
DdeI CTNAG 5 cut(s) 923, 942, 1062, 1083, 1792
DpnI GATC 3 cut(s) 148, 1024, 1539
DpnII GATC 3 cut(s) 146, 1022, 1537
Eam1104I CTCTTC 3 cut(s) 71, 285, 291
EarI CTCTTC 3 cut(s) 71, 285, 291
Ecl136II GAGCTC 1 cut(s) 1444
Eco130I CCWWGG 1 cut(s) 1566
Eco24I GRGCYC 1 cut(s) 1446
Eco32I GATATC 1 cut(s) 83
Eco47I GGWCC 2 cut(s) 517, 1395
Eco53kI GAGCTC 1 cut(s) 1444
Eco57I CTGAAG 4 cut(s) 95, 1413, 1796, 2028
Eco81I CCTNAGG 1 cut(s) 1062
Eco88I CYCGRG 1 cut(s) 1121
EcoICRI GAGCTC 1 cut(s) 1444
EcoO109I RGGNCCY 1 cut(s) 517
EcoRI GAATTC 1 cut(s) 1221
EcoRII CCWGG 3 cut(s) 110, 352, 519
EcoRV GATATC 1 cut(s) 83
EcoT14I CCWWGG 1 cut(s) 1566
EcoT22I ATGCAT 2 cut(s) 614, 618
EcoT38I GRGCYC 1 cut(s) 1446
ErhI CCWWGG 1 cut(s) 1566
FalI AAGNNNNNCTT 6 cut(s) 520, 552, 1241, 1273, 1636, 1668
FaqI GGGAC 1 cut(s) 1791
FblI GTMKAC 1 cut(s) 16
Fnu4HI GCNGC 4 cut(s) 445, 562, 646, 1329
FokI GGATG 8 cut(s) 380, 1080, 1158, 1613, 1664, 1877, 1997, 2041
FriOI GRGCYC 1 cut(s) 1446
Fsp4HI GCNGC 4 cut(s) 445, 562, 646, 1329
FspBI CTAG 6 cut(s) 185, 212, 477, 492, 666, 867
GluI GCNGC 4 cut(s) 445, 562, 646, 1329
HaeIII GGCC 3 cut(s) 972, 1060, 1848
HgaI GACGC 1 cut(s) 808
HincII GTYRAC 3 cut(s) 17, 1486, 1993
HindII GTYRAC 3 cut(s) 17, 1486, 1993
HinfI GANTC 7 cut(s) 524, 814, 881, 1184, 1382, 1575, 1868
HphI GGTGA 7 cut(s) 16, 38, 331, 332, 856, 1379, 1501
Hpy166II GTNNAC 7 cut(s) 17, 768, 1255, 1486, 1509, 1710, 1993
Hpy188I TCNGA 5 cut(s) 151, 926, 1022, 1086, 1724
Hpy8I GTNNAC 7 cut(s) 17, 768, 1255, 1486, 1509, 1710, 1993
Hpy99I CGWCG 1 cut(s) 90
HpyAV CCTTC 8 cut(s) 38, 108, 110, 508, 785, 821, 871, 987
HpyCH4III ACNGT 5 cut(s) 731, 772, 933, 1420, 1506
HpyCH4IV ACGT 2 cut(s) 1712, 1780
HpyF10VI GCNNNNNNNGC 7 cut(s) 441, 486, 558, 1589, 1906, 2072, 2081
HpyF3I CTNAG 5 cut(s) 923, 942, 1062, 1083, 1792
HpySE526I ACGT 2 cut(s) 1712, 1780
Kzo9I GATC 3 cut(s) 146, 1022, 1537
LguI GCTCTTC 1 cut(s) 291
LmnI GCTCC 4 cut(s) 452, 485, 1645, 2081
Lsp1109I GCAGC 4 cut(s) 456, 548, 632, 1340
LweI GCATC 4 cut(s) 1426, 1500, 1579, 1792
MaeI CTAG 6 cut(s) 185, 212, 477, 492, 666, 867
MaeII ACGT 2 cut(s) 1712, 1780
MaeIII GTNAC 5 cut(s) 69, 337, 1193, 1265, 1726
MalI GATC 3 cut(s) 148, 1024, 1539
MboI GATC 3 cut(s) 146, 1022, 1537
MhlI GDGCHC 2 cut(s) 426, 1446
MlyI GAGTC 1 cut(s) 890
MmeI TCCRAC 2 cut(s) 31, 1654
Mph1103I ATGCAT 2 cut(s) 614, 618
MseI TTAA 9 cut(s) 333, 344, 389, 852, 903, 1001, 1127, 1139, 2070
MslI CAYNNNNRTG 1 cut(s) 398
MspR9I CCNGG 3 cut(s) 112, 354, 521
Mva1269I GAATGC 1 cut(s) 844
MvaI CCWGG 3 cut(s) 112, 354, 521
MvnI CGCG 1 cut(s) 819
MwoI GCNNNNNNNGC 7 cut(s) 441, 486, 558, 1589, 1906, 2072, 2081
NdeII GATC 3 cut(s) 146, 1022, 1537
NlaIV GGNNCC 2 cut(s) 58, 1641
NmeAIII GCCGAG 1 cut(s) 1465
NmuCI GTSAC 2 cut(s) 337, 1265
NsiI ATGCAT 2 cut(s) 614, 618
NspI RCATGY 3 cut(s) 612, 616, 1243
PaeI GCATGC 2 cut(s) 612, 616
PagI TCATGA 1 cut(s) 873
PciSI GCTCTTC 1 cut(s) 291
PctI GAATGC 1 cut(s) 844
PfeI GAWTC 6 cut(s) 524, 814, 1184, 1382, 1575, 1868
PflFI GACNNNGTC 2 cut(s) 12, 653
PfoI TCCNGGA 1 cut(s) 519
PkrI GCNGC 4 cut(s) 446, 563, 647, 1330
PleI GAGTC 1 cut(s) 889
PpsI GAGTC 1 cut(s) 889
PpuMI RGGWCCY 1 cut(s) 517
PshBI ATTAAT 1 cut(s) 333
PsiI TTATAA 3 cut(s) 1115, 1358, 2058
Psp124BI GAGCTC 1 cut(s) 1446
Psp5II RGGWCCY 1 cut(s) 517
Psp6I CCWGG 3 cut(s) 110, 352, 519
PspGI CCWGG 3 cut(s) 110, 352, 519
PspN4I GGNNCC 2 cut(s) 58, 1641
PspPI GGNCC 3 cut(s) 517, 971, 1395
PspPPI RGGWCCY 1 cut(s) 517
PstI CTGCAG 1 cut(s) 446
PstNI CAGNNNCTG 2 cut(s) 1349, 1799
PsyI GACNNNGTC 2 cut(s) 12, 653
RsaI GTAC 3 cut(s) 532, 725, 1877
RsaNI GTAC 3 cut(s) 531, 724, 1876
RseI CAYNNNNRTG 1 cut(s) 398
SacI GAGCTC 1 cut(s) 1446
SalI GTCGAC 1 cut(s) 15
SapI GCTCTTC 1 cut(s) 291
SaqAI TTAA 9 cut(s) 333, 344, 389, 852, 903, 1001, 1127, 1139, 2070
SatI GCNGC 4 cut(s) 445, 562, 646, 1329
Sau3AI GATC 3 cut(s) 146, 1022, 1537
Sau96I GGNCC 3 cut(s) 517, 971, 1395
SchI GAGTC 1 cut(s) 890
ScrFI CCNGG 3 cut(s) 112, 354, 521
SduI GDGCHC 2 cut(s) 426, 1446
SfaNI GCATC 4 cut(s) 1426, 1500, 1579, 1792
SfcI CTRYAG 2 cut(s) 442, 1172
SinI GGWCC 2 cut(s) 517, 1395
SmiMI CAYNNNNRTG 1 cut(s) 398
SmlI CTYRAG 2 cut(s) 809, 1403
SmoI CTYRAG 2 cut(s) 809, 1403
SphI GCATGC 2 cut(s) 612, 616
SsiI CCGC 3 cut(s) 842, 1229, 1379
SspMI CTAG 6 cut(s) 185, 212, 477, 492, 666, 867
SstI GAGCTC 1 cut(s) 1446
StyD4I CCNGG 3 cut(s) 110, 352, 519
StyI CCWWGG 1 cut(s) 1566
TaaI ACNGT 5 cut(s) 731, 772, 933, 1420, 1506
TaiI ACGT 2 cut(s) 1715, 1783
TaqI TCGA 8 cut(s) 16, 88, 282, 544, 825, 1011, 1219, 1452
TatI WGTACW 1 cut(s) 530
TfiI GAWTC 6 cut(s) 524, 814, 1184, 1382, 1575, 1868
Tru1I TTAA 9 cut(s) 333, 344, 389, 852, 903, 1001, 1127, 1139, 2070
Tru9I TTAA 9 cut(s) 333, 344, 389, 852, 903, 1001, 1127, 1139, 2070
TscAI CASTG 3 cut(s) 405, 413, 1800
TseFI GTSAC 2 cut(s) 337, 1265
TseI GCWGC 4 cut(s) 444, 561, 645, 1328
Tsp45I GTSAC 2 cut(s) 337, 1265
TspGWI ACGGA 1 cut(s) 927
TspRI CASTG 3 cut(s) 405, 413, 1800
Tth111I GACNNNGTC 2 cut(s) 12, 653
VpaK11BI GGWCC 2 cut(s) 517, 1395
VspI ATTAAT 1 cut(s) 333
XapI RAATTY 7 cut(s) 242, 716, 1199, 1221, 1942, 1999, 2011
XceI RCATGY 3 cut(s) 612, 616, 1243
XcmI CCANNNNNNNNNTGG 1 cut(s) 965
XmiI GTMKAC 1 cut(s) 16
XspI CTAG 6 cut(s) 185, 212, 477, 492, 666, 867
Zsp2I ATGCAT 2 cut(s) 614, 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.