E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Sina_RING | PF21362 | 163 - 199 | 1.3e-08 | E3 ubiquitin-protein ligase sina/sinah, RING finger |
| Sina_ZnF | PF21361 | 216 - 278 | 1.9e-10 | Sina, zinc finger |
| Sina_RING | PF21362 | 480 - 516 | 1.3e-08 | E3 ubiquitin-protein ligase sina/sinah, RING finger |
| Sina_ZnF | PF21361 | 530 - 594 | 7.5e-10 | Sina, zinc finger |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1167 |
| AatII | GACGTC | 1 cut(s) | 13 |
| Acc36I | ACCTGC | 1 cut(s) | 1167 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 194 |
| AccBSI | CCGCTC | 1 cut(s) | 1306 |
| AccII | CGCG | 1 cut(s) | 2130 |
| AciI | CCGC | 2 cut(s) | 1130, 1304 |
| AclWI | GGATC | 3 cut(s) | 141, 606, 619 |
| AcoI | YGGCCR | 3 cut(s) | 101, 510, 1578 |
| AcsI | RAATTY | 5 cut(s) | 638, 713, 964, 1238, 1349 |
| AcuI | CTGAAG | 1 cut(s) | 1106 |
| AcyI | GRCGYC | 1 cut(s) | 10 |
| AfaI | GTAC | 4 cut(s) | 680, 1631, 1873, 2133 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 194, 625, 764, 960, 1717, 1718 |
| AflIII | ACRYGT | 2 cut(s) | 731, 1682 |
| AjnI | CCWGG | 1 cut(s) | 1423 |
| AluBI | AGCT | 5 cut(s) | 981, 996, 1502, 1929, 2113 |
| AluI | AGCT | 5 cut(s) | 981, 996, 1502, 1929, 2113 |
| Alw21I | GWGCWC | 1 cut(s) | 1607 |
| Alw26I | GTCTC | 6 cut(s) | 228, 784, 1034, 1192, 1312, 1738 |
| AlwI | GGATC | 3 cut(s) | 141, 606, 619 |
| Ama87I | CYCGRG | 2 cut(s) | 1163, 2114 |
| AoxI | GGCC | 5 cut(s) | 54, 101, 510, 627, 1578 |
| ApeKI | GCWGC | 3 cut(s) | 564, 684, 1635 |
| ApoI | RAATTY | 5 cut(s) | 638, 713, 964, 1238, 1349 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 121, 1993 |
| AspLEI | GCGC | 3 cut(s) | 569, 1188, 2130 |
| AspS9I | GGNCC | 1 cut(s) | 627 |
| AsuC2I | CCSGG | 2 cut(s) | 626, 960 |
| AsuHPI | GGTGA | 2 cut(s) | 1148, 1660 |
| AsuII | TTCGAA | 1 cut(s) | 2029 |
| AvaI | CYCGRG | 2 cut(s) | 1163, 2114 |
| BalI | TGGCCA | 2 cut(s) | 103, 512 |
| BamHI | GGATCC | 1 cut(s) | 611 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 112, 144 |
| BbsI | GAAGAC | 7 cut(s) | 273, 345, 514, 855, 1260, 1325, 1465 |
| Bbv12I | GWGCWC | 1 cut(s) | 1607 |
| BbvCI | CCTCAGC | 1 cut(s) | 1925 |
| BbvI | GCAGC | 3 cut(s) | 551, 671, 1622 |
| BccI | CCATC | 9 cut(s) | 188, 380, 421, 481, 521, 914, 1162, 2099, 2113 |
| BceAI | ACGGC | 3 cut(s) | 614, 697, 1648 |
| BciT130I | CCWGG | 1 cut(s) | 1425 |
| BciVI | GTATCC | 1 cut(s) | 419 |
| BclI | TGATCA | 3 cut(s) | 1153, 1483, 1771 |
| BcnI | CCSGG | 2 cut(s) | 626, 960 |
| BcoDI | GTCTC | 6 cut(s) | 228, 784, 1034, 1192, 1312, 1738 |
| BfaI | CTAG | 3 cut(s) | 260, 1977, 2049 |
| BfmI | CTRYAG | 1 cut(s) | 2036 |
| BfuAI | ACCTGC | 1 cut(s) | 1167 |
| BfuI | GTATCC | 1 cut(s) | 419 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1560 |
| BisI | GCNGC | 3 cut(s) | 565, 685, 1636 |
| BlsI | GCNGC | 3 cut(s) | 566, 686, 1637 |
| Bme1390I | CCNGG | 3 cut(s) | 626, 960, 1425 |
| BmeT110I | CYCGRG | 2 cut(s) | 1163, 2114 |
| BmgT120I | GGNCC | 1 cut(s) | 627 |
| BmiI | GGNNCC | 2 cut(s) | 613, 1564 |
| BmrFI | CCNGG | 3 cut(s) | 626, 960, 1425 |
| BmsI | GCATC | 2 cut(s) | 611, 1891 |
| BpiI | GAAGAC | 7 cut(s) | 273, 345, 514, 855, 1260, 1325, 1465 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2072, 2104 |
| BpmI | CTGGAG | 1 cut(s) | 127 |
| Bpu10I | CCTNAGC | 3 cut(s) | 977, 1307, 1925 |
| Bpu14I | TTCGAA | 1 cut(s) | 2029 |
| BpuEI | CTTGAG | 1 cut(s) | 2061 |
| BpuMI | CCSGG | 2 cut(s) | 626, 960 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1172 |
| BsaHI | GRCGYC | 1 cut(s) | 10 |
| BsaI | GGTCTC | 2 cut(s) | 1192, 1312 |
| BsaJI | CCNNGG | 5 cut(s) | 783, 959, 1423, 1581, 1743 |
| BsaWI | WCCGGW | 1 cut(s) | 1645 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 194, 625, 764, 960, 1717, 1718 |
| Bse1I | ACTGG | 3 cut(s) | 417, 526, 1477 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1172 |
| BseBI | CCWGG | 1 cut(s) | 1425 |
| BseDI | CCNNGG | 5 cut(s) | 783, 959, 1423, 1581, 1743 |
| BseGI | GGATG | 7 cut(s) | 382, 413, 513, 922, 930, 1870, 2128 |
| BseJI | GATNNNNATC | 1 cut(s) | 1172 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 194, 625, 764, 960, 1717, 1718 |
| BseMII | CTCAG | 3 cut(s) | 459, 1321, 1939 |
| BseNI | ACTGG | 3 cut(s) | 417, 526, 1477 |
| BseRI | GAGGAG | 3 cut(s) | 547, 772, 1498 |
| BseXI | GCAGC | 3 cut(s) | 551, 671, 1622 |
| BseYI | CCCAGC | 1 cut(s) | 992 |
| BsgI | GTGCAG | 1 cut(s) | 1621 |
| Bsh1236I | CGCG | 1 cut(s) | 2130 |
| BshFI | GGCC | 5 cut(s) | 56, 103, 512, 629, 1580 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1607 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1163, 2114 |
| BsiSI | CCGG | 4 cut(s) | 625, 959, 1618, 1646 |
| BslFI | GGGAC | 1 cut(s) | 741 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 194, 625, 764, 960, 1717, 1718 |
| BsmAI | GTCTC | 6 cut(s) | 228, 784, 1034, 1192, 1312, 1738 |
| BsmBI | CGTCTC | 1 cut(s) | 228 |
| BsmFI | GGGAC | 1 cut(s) | 741 |
| BsmI | GAATGC | 1 cut(s) | 2025 |
| BsnI | GGCC | 5 cut(s) | 56, 103, 512, 629, 1580 |
| Bso31I | GGTCTC | 2 cut(s) | 1192, 1312 |
| BsoBI | CYCGRG | 2 cut(s) | 1163, 2114 |
| Bsp119I | TTCGAA | 1 cut(s) | 2029 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1607 |
| Bsp19I | CCATGG | 2 cut(s) | 1581, 1743 |
| BspACI | CCGC | 2 cut(s) | 1130, 1304 |
| BspANI | GGCC | 5 cut(s) | 56, 103, 512, 629, 1580 |
| BspCNI | CTCAG | 3 cut(s) | 460, 1320, 1938 |
| BspFNI | CGCG | 1 cut(s) | 2130 |
| BspLI | GGNNCC | 2 cut(s) | 613, 1564 |
| BspMAI | CTGCAG | 1 cut(s) | 2040 |
| BspMI | ACCTGC | 1 cut(s) | 1167 |
| BspPI | GGATC | 3 cut(s) | 141, 606, 619 |
| BspT104I | TTCGAA | 1 cut(s) | 2029 |
| BspTNI | GGTCTC | 2 cut(s) | 1192, 1312 |
| BsrBI | CCGCTC | 1 cut(s) | 1306 |
| BsrI | ACTGG | 3 cut(s) | 417, 526, 1477 |
| BssECI | CCNNGG | 5 cut(s) | 783, 959, 1423, 1581, 1743 |
| BssNI | GRCGYC | 1 cut(s) | 10 |
| BssT1I | CCWWGG | 2 cut(s) | 1581, 1743 |
| Bst2UI | CCWGG | 1 cut(s) | 1425 |
| Bst4CI | ACNGT | 5 cut(s) | 184, 402, 443, 1465, 2010 |
| Bst6I | CTCTTC | 4 cut(s) | 291, 327, 366, 2095 |
| BstACI | GRCGYC | 1 cut(s) | 10 |
| BstBI | TTCGAA | 1 cut(s) | 2029 |
| BstC8I | GCNNGC | 2 cut(s) | 1504, 2036 |
| BstDEI | CTNAG | 6 cut(s) | 468, 977, 1307, 1340, 1415, 1925 |
| BstDSI | CCRYGG | 2 cut(s) | 1581, 1743 |
| BstEII | GGTNACC | 4 cut(s) | 457, 1265, 1385, 1408 |
| BstF5I | GGATG | 7 cut(s) | 382, 413, 513, 922, 930, 1870, 2128 |
| BstFNI | CGCG | 1 cut(s) | 2130 |
| BstHHI | GCGC | 3 cut(s) | 569, 1188, 2130 |
| BstMAI | GTCTC | 6 cut(s) | 228, 784, 1034, 1192, 1312, 1738 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 478, 495, 561, 1080, 1446, 1560, 2031 |
| BstNI | CCWGG | 1 cut(s) | 1425 |
| BstNSI | RCATGY | 2 cut(s) | 735, 1686 |
| BstPI | GGTNACC | 4 cut(s) | 457, 1265, 1385, 1408 |
| BstSCI | CCNGG | 3 cut(s) | 624, 958, 1423 |
| BstSFI | CTRYAG | 1 cut(s) | 2036 |
| BstUI | CGCG | 1 cut(s) | 2130 |
| BstV1I | GCAGC | 3 cut(s) | 551, 671, 1622 |
| BstV2I | GAAGAC | 7 cut(s) | 273, 345, 514, 855, 1260, 1325, 1465 |
| BstX2I | RGATCY | 2 cut(s) | 146, 611 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1000 |
| BstYI | RGATCY | 2 cut(s) | 146, 611 |
| BsuI | GTATCC | 1 cut(s) | 419 |
| BsuRI | GGCC | 5 cut(s) | 56, 103, 512, 629, 1580 |
| BtgI | CCRYGG | 2 cut(s) | 1581, 1743 |
| BtsCI | GGATG | 7 cut(s) | 382, 413, 513, 922, 930, 1870, 2128 |
| BtsIMutI | CAGTG | 4 cut(s) | 189, 424, 533, 1484 |
| BveI | ACCTGC | 1 cut(s) | 1167 |
| Cac8I | GCNNGC | 2 cut(s) | 1504, 2036 |
| CfoI | GCGC | 3 cut(s) | 569, 1188, 2130 |
| Cfr13I | GGNCC | 1 cut(s) | 627 |
| CseI | GACGC | 1 cut(s) | 1319 |
| Csp6I | GTAC | 4 cut(s) | 679, 1630, 1872, 2132 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 70, 105, 435, 470 |
| CviQI | GTAC | 4 cut(s) | 679, 1630, 1872, 2132 |
| DdeI | CTNAG | 6 cut(s) | 468, 977, 1307, 1340, 1415, 1925 |
| EaeI | YGGCCR | 3 cut(s) | 101, 510, 1578 |
| Eam1104I | CTCTTC | 4 cut(s) | 291, 327, 366, 2095 |
| EarI | CTCTTC | 4 cut(s) | 291, 327, 366, 2095 |
| Eco130I | CCWWGG | 2 cut(s) | 1581, 1743 |
| Eco31I | GGTCTC | 2 cut(s) | 1192, 1312 |
| Eco32I | GATATC | 2 cut(s) | 30, 78 |
| Eco57I | CTGAAG | 1 cut(s) | 1106 |
| Eco88I | CYCGRG | 2 cut(s) | 1163, 2114 |
| Eco91I | GGTNACC | 4 cut(s) | 457, 1265, 1385, 1408 |
| EcoO65I | GGTNACC | 4 cut(s) | 457, 1265, 1385, 1408 |
| EcoRII | CCWGG | 1 cut(s) | 1423 |
| EcoRV | GATATC | 2 cut(s) | 30, 78 |
| EcoT14I | CCWWGG | 2 cut(s) | 1581, 1743 |
| ErhI | CCWWGG | 2 cut(s) | 1581, 1743 |
| Esp3I | CGTCTC | 1 cut(s) | 228 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1940, 1972 |
| FaqI | GGGAC | 1 cut(s) | 741 |
| FauI | CCCGC | 1 cut(s) | 1311 |
| FauNDI | CATATG | 2 cut(s) | 1535, 2136 |
| FbaI | TGATCA | 3 cut(s) | 1153, 1483, 1771 |
| Fnu4HI | GCNGC | 3 cut(s) | 565, 685, 1636 |
| FokI | GGATG | 7 cut(s) | 389, 400, 500, 929, 937, 1877, 2135 |
| Fsp4HI | GCNGC | 3 cut(s) | 565, 685, 1636 |
| FspBI | CTAG | 3 cut(s) | 260, 1977, 2049 |
| GlaI | GCGC | 3 cut(s) | 568, 1187, 2129 |
| GluI | GCNGC | 3 cut(s) | 565, 685, 1636 |
| GsaI | CCCAGC | 1 cut(s) | 996 |
| GsuI | CTGGAG | 1 cut(s) | 127 |
| HaeIII | GGCC | 5 cut(s) | 56, 103, 512, 629, 1580 |
| HapII | CCGG | 4 cut(s) | 625, 959, 1618, 1646 |
| HgaI | GACGC | 1 cut(s) | 1319 |
| HhaI | GCGC | 3 cut(s) | 569, 1188, 2130 |
| Hin1I | GRCGYC | 1 cut(s) | 10 |
| Hin6I | GCGC | 3 cut(s) | 567, 1186, 2128 |
| HinP1I | GCGC | 3 cut(s) | 567, 1186, 2128 |
| HincII | GTYRAC | 2 cut(s) | 940, 1285 |
| HindII | GTYRAC | 2 cut(s) | 940, 1285 |
| HinfI | GANTC | 9 cut(s) | 16, 647, 658, 1106, 1145, 1598, 1781, 1994, 2096 |
| HpaII | CCGG | 4 cut(s) | 625, 959, 1618, 1646 |
| HphI | GGTGA | 2 cut(s) | 1148, 1660 |
| Hpy166II | GTNNAC | 2 cut(s) | 940, 1285 |
| Hpy188I | TCNGA | 4 cut(s) | 15, 1050, 1910, 2095 |
| Hpy8I | GTNNAC | 2 cut(s) | 940, 1285 |
| Hpy99I | CGWCG | 2 cut(s) | 635, 1292 |
| HpyAV | CCTTC | 4 cut(s) | 224, 389, 965, 1582 |
| HpyCH4III | ACNGT | 5 cut(s) | 184, 402, 443, 1465, 2010 |
| HpyCH4IV | ACGT | 1 cut(s) | 10 |
| HpyCH4V | TGCA | 8 cut(s) | 158, 220, 687, 1518, 1638, 1725, 1787, 2038 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 478, 495, 561, 1080, 1446, 1560, 2031 |
| HpyF3I | CTNAG | 6 cut(s) | 468, 977, 1307, 1340, 1415, 1925 |
| HpySE526I | ACGT | 1 cut(s) | 10 |
| Hsp92I | GRCGYC | 1 cut(s) | 10 |
| HspAI | GCGC | 3 cut(s) | 567, 1186, 2128 |
| Ksp22I | TGATCA | 3 cut(s) | 1153, 1483, 1771 |
| LmnI | GCTCC | 3 cut(s) | 560, 1511, 1568 |
| Lsp1109I | GCAGC | 3 cut(s) | 551, 671, 1622 |
| LweI | GCATC | 2 cut(s) | 611, 1891 |
| MaeI | CTAG | 3 cut(s) | 260, 1977, 2049 |
| MaeII | ACGT | 1 cut(s) | 10 |
| MbiI | CCGCTC | 1 cut(s) | 1306 |
| MflI | RGATCY | 2 cut(s) | 146, 611 |
| MhlI | GDGCHC | 1 cut(s) | 1607 |
| MlsI | TGGCCA | 2 cut(s) | 103, 512 |
| MluNI | TGGCCA | 2 cut(s) | 103, 512 |
| MlyI | GAGTC | 2 cut(s) | 652, 1607 |
| MmeI | TCCRAC | 2 cut(s) | 639, 825 |
| Mox20I | TGGCCA | 2 cut(s) | 103, 512 |
| MroXI | GAANNNNTTC | 2 cut(s) | 121, 1993 |
| MscI | TGGCCA | 2 cut(s) | 103, 512 |
| MseI | TTAA | 5 cut(s) | 576, 878, 1029, 1055, 1124 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1893 |
| Msp20I | TGGCCA | 2 cut(s) | 103, 512 |
| MspA1I | CMGCKG | 1 cut(s) | 1929 |
| MspI | CCGG | 4 cut(s) | 625, 959, 1618, 1646 |
| MspR9I | CCNGG | 3 cut(s) | 626, 960, 1425 |
| Mva1269I | GAATGC | 1 cut(s) | 2025 |
| MvaI | CCWGG | 1 cut(s) | 1425 |
| MvnI | CGCG | 1 cut(s) | 2130 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 478, 495, 561, 1080, 1446, 1560, 2031 |
| NciI | CCSGG | 2 cut(s) | 626, 960 |
| NcoI | CCATGG | 2 cut(s) | 1581, 1743 |
| NdeI | CATATG | 2 cut(s) | 1535, 2136 |
| NlaIV | GGNNCC | 2 cut(s) | 613, 1564 |
| NmeAIII | GCCGAG | 3 cut(s) | 32, 764, 1556 |
| NmuCI | GTSAC | 6 cut(s) | 437, 697, 970, 1063, 1648, 2014 |
| NspI | RCATGY | 2 cut(s) | 735, 1686 |
| NspV | TTCGAA | 1 cut(s) | 2029 |
| PaeR7I | CTCGAG | 2 cut(s) | 1163, 2114 |
| PaqCI | CACCTGC | 1 cut(s) | 1167 |
| PciI | ACATGT | 2 cut(s) | 731, 1682 |
| PctI | GAATGC | 1 cut(s) | 2025 |
| PdmI | GAANNNNTTC | 2 cut(s) | 121, 1993 |
| PfeI | GAWTC | 7 cut(s) | 16, 647, 1106, 1145, 1781, 1994, 2096 |
| PflFI | GACNNNGTC | 2 cut(s) | 1203, 1323 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 194 |
| PkrI | GCNGC | 3 cut(s) | 566, 686, 1637 |
| PleI | GAGTC | 2 cut(s) | 652, 1606 |
| PpsI | GAGTC | 2 cut(s) | 652, 1606 |
| PscI | ACATGT | 2 cut(s) | 731, 1682 |
| Psp6I | CCWGG | 1 cut(s) | 1423 |
| PspEI | GGTNACC | 4 cut(s) | 457, 1265, 1385, 1408 |
| PspFI | CCCAGC | 1 cut(s) | 992 |
| PspGI | CCWGG | 1 cut(s) | 1423 |
| PspN4I | GGNNCC | 2 cut(s) | 613, 1564 |
| PspPI | GGNCC | 1 cut(s) | 627 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1613, 1645 |
| PstI | CTGCAG | 1 cut(s) | 2040 |
| PsuI | RGATCY | 2 cut(s) | 146, 611 |
| PsyI | GACNNNGTC | 2 cut(s) | 1203, 1323 |
| PvuII | CAGCTG | 1 cut(s) | 1929 |
| RsaI | GTAC | 4 cut(s) | 680, 1631, 1873, 2133 |
| RsaNI | GTAC | 4 cut(s) | 679, 1630, 1872, 2132 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1893 |
| SaqAI | TTAA | 5 cut(s) | 576, 878, 1029, 1055, 1124 |
| SatI | GCNGC | 3 cut(s) | 565, 685, 1636 |
| Sau96I | GGNCC | 1 cut(s) | 627 |
| SbfI | CCTGCAGG | 1 cut(s) | 2040 |
| SchI | GAGTC | 2 cut(s) | 652, 1607 |
| ScrFI | CCNGG | 3 cut(s) | 626, 960, 1425 |
| SdaI | CCTGCAGG | 1 cut(s) | 2040 |
| SduI | GDGCHC | 1 cut(s) | 1607 |
| SfaNI | GCATC | 2 cut(s) | 611, 1891 |
| SfcI | CTRYAG | 1 cut(s) | 2036 |
| Sfr274I | CTCGAG | 2 cut(s) | 1163, 2114 |
| SfuI | TTCGAA | 1 cut(s) | 2029 |
| SlaI | CTCGAG | 2 cut(s) | 1163, 2114 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1893 |
| SmlI | CTYRAG | 3 cut(s) | 1163, 2076, 2114 |
| SmoI | CTYRAG | 3 cut(s) | 1163, 2076, 2114 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 2040 |
| SsiI | CCGC | 2 cut(s) | 1130, 1304 |
| SspI | AATATT | 1 cut(s) | 451 |
| SspMI | CTAG | 3 cut(s) | 260, 1977, 2049 |
| StyD4I | CCNGG | 3 cut(s) | 624, 958, 1423 |
| StyI | CCWWGG | 2 cut(s) | 1581, 1743 |
| TaaI | ACNGT | 5 cut(s) | 184, 402, 443, 1465, 2010 |
| TaiI | ACGT | 1 cut(s) | 13 |
| TaqI | TCGA | 6 cut(s) | 205, 633, 1164, 1601, 2029, 2115 |
| TfiI | GAWTC | 7 cut(s) | 16, 647, 1106, 1145, 1781, 1994, 2096 |
| Tru1I | TTAA | 5 cut(s) | 576, 878, 1029, 1055, 1124 |
| Tru9I | TTAA | 5 cut(s) | 576, 878, 1029, 1055, 1124 |
| TscAI | CASTG | 4 cut(s) | 189, 424, 533, 1484 |
| TseFI | GTSAC | 6 cut(s) | 437, 697, 970, 1063, 1648, 2014 |
| TseI | GCWGC | 3 cut(s) | 564, 684, 1635 |
| Tsp45I | GTSAC | 6 cut(s) | 437, 697, 970, 1063, 1648, 2014 |
| TspGWI | ACGGA | 1 cut(s) | 902 |
| TspRI | CASTG | 4 cut(s) | 189, 424, 533, 1484 |
| Tth111I | GACNNNGTC | 2 cut(s) | 1203, 1323 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 194 |
| XapI | RAATTY | 5 cut(s) | 638, 713, 964, 1238, 1349 |
| XceI | RCATGY | 2 cut(s) | 735, 1686 |
| XhoI | CTCGAG | 2 cut(s) | 1163, 2114 |
| XmnI | GAANNNNTTC | 2 cut(s) | 121, 1993 |
| XspI | CTAG | 3 cut(s) | 260, 1977, 2049 |
| ZraI | GACGTC | 1 cut(s) | 11 |