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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 575 |
| Acc36I | ACCTGC | 1 cut(s) | 575 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 395, 608 |
| AccBSI | CCGCTC | 2 cut(s) | 55, 80 |
| AciI | CCGC | 8 cut(s) | 26, 29, 32, 50, 53, 68, 78, 292 |
| AclWI | GGATC | 5 cut(s) | 308, 347, 685, 914, 1157 |
| AcoI | YGGCCR | 1 cut(s) | 1235 |
| AcsI | RAATTY | 6 cut(s) | 7, 392, 605, 1168, 1267, 1308 |
| AcuI | CTGAAG | 1 cut(s) | 1010 |
| AfaI | GTAC | 2 cut(s) | 915, 1281 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 217, 276, 395, 608, 778 |
| AflIII | ACRYGT | 2 cut(s) | 446, 760 |
| AgsI | TTSAA | 6 cut(s) | 136, 161, 706, 845, 950, 1036 |
| AjnI | CCWGG | 2 cut(s) | 86, 1200 |
| AleI | CACNNNNGTG | 1 cut(s) | 326 |
| AluBI | AGCT | 8 cut(s) | 127, 721, 956, 1014, 1076, 1106, 1149, 1226 |
| AluI | AGCT | 8 cut(s) | 127, 721, 956, 1014, 1076, 1106, 1149, 1226 |
| Alw21I | GWGCWC | 2 cut(s) | 45, 1200 |
| Alw26I | GTCTC | 1 cut(s) | 260 |
| AlwI | GGATC | 5 cut(s) | 308, 347, 685, 914, 1157 |
| AoxI | GGCC | 2 cut(s) | 1003, 1235 |
| ApaI | GGGCCC | 1 cut(s) | 1007 |
| ApeKI | GCWGC | 3 cut(s) | 427, 684, 956 |
| ApoI | RAATTY | 6 cut(s) | 7, 392, 605, 1168, 1267, 1308 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 101, 133 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 11 |
| AspS9I | GGNCC | 5 cut(s) | 242, 331, 769, 1003, 1004 |
| AsuC2I | CCSGG | 1 cut(s) | 422 |
| AsuHPI | GGTGA | 2 cut(s) | 571, 793 |
| AsuNHI | GCTAGC | 1 cut(s) | 1021 |
| AvaII | GGWCC | 3 cut(s) | 242, 331, 769 |
| AxyI | CCTNAGG | 1 cut(s) | 261 |
| BaeGI | GKGCMC | 1 cut(s) | 1007 |
| BanII | GRGCYC | 1 cut(s) | 1007 |
| Bbv12I | GWGCWC | 2 cut(s) | 45, 1200 |
| BbvI | GCAGC | 3 cut(s) | 414, 696, 943 |
| BccI | CCATC | 2 cut(s) | 614, 706 |
| BceAI | ACGGC | 2 cut(s) | 1250, 1291 |
| BciT130I | CCWGG | 2 cut(s) | 88, 1202 |
| BclI | TGATCA | 2 cut(s) | 186, 250 |
| BcnI | CCSGG | 1 cut(s) | 422 |
| BcoDI | GTCTC | 1 cut(s) | 260 |
| BfaI | CTAG | 2 cut(s) | 1022, 1244 |
| BfmI | CTRYAG | 2 cut(s) | 36, 582 |
| BfuAI | ACCTGC | 1 cut(s) | 575 |
| BisI | GCNGC | 8 cut(s) | 26, 29, 32, 53, 78, 428, 685, 957 |
| BlpI | GCTNAGC | 1 cut(s) | 484 |
| BlsI | GCNGC | 8 cut(s) | 27, 30, 33, 54, 79, 429, 686, 958 |
| Bme1390I | CCNGG | 3 cut(s) | 88, 422, 1202 |
| Bme18I | GGWCC | 3 cut(s) | 242, 331, 769 |
| BmgT120I | GGNCC | 5 cut(s) | 242, 331, 769, 1003, 1004 |
| BmiI | GGNNCC | 3 cut(s) | 24, 505, 1005 |
| BmrFI | CCNGG | 3 cut(s) | 88, 422, 1202 |
| BmsI | GCATC | 2 cut(s) | 968, 1230 |
| BmtI | GCTAGC | 1 cut(s) | 1025 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 484 |
| BpuEI | CTTGAG | 1 cut(s) | 737 |
| BpuMI | CCSGG | 1 cut(s) | 422 |
| Bsa29I | ATCGAT | 1 cut(s) | 831 |
| BsaI | GGTCTC | 1 cut(s) | 260 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 495, 525 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 217, 276, 395, 608, 778 |
| Bse21I | CCTNAGG | 1 cut(s) | 261 |
| BseBI | CCWGG | 2 cut(s) | 88, 1202 |
| BseCI | ATCGAT | 1 cut(s) | 831 |
| BseGI | GGATG | 1 cut(s) | 96 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 217, 276, 395, 608, 778 |
| BseMII | CTCAG | 4 cut(s) | 252, 363, 498, 1024 |
| BseRI | GAGGAG | 1 cut(s) | 278 |
| BseSI | GKGCMC | 1 cut(s) | 1007 |
| BseX3I | CGGCCG | 1 cut(s) | 1235 |
| BseXI | GCAGC | 3 cut(s) | 414, 696, 943 |
| BseYI | CCCAGC | 1 cut(s) | 1226 |
| BsgI | GTGCAG | 1 cut(s) | 611 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1238 |
| BshFI | GGCC | 2 cut(s) | 1005, 1237 |
| BshVI | ATCGAT | 1 cut(s) | 831 |
| BsiEI | CGRYCG | 1 cut(s) | 1238 |
| BsiHKAI | GWGCWC | 2 cut(s) | 45, 1200 |
| BsiSI | CCGG | 1 cut(s) | 422 |
| BslFI | GGGAC | 1 cut(s) | 32 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 217, 276, 395, 608, 778 |
| BsmAI | GTCTC | 1 cut(s) | 260 |
| BsmFI | GGGAC | 1 cut(s) | 32 |
| BsmI | GAATGC | 3 cut(s) | 286, 1031, 1119 |
| BsnI | GGCC | 2 cut(s) | 1005, 1237 |
| Bso31I | GGTCTC | 1 cut(s) | 260 |
| Bsp120I | GGGCCC | 1 cut(s) | 1003 |
| Bsp1286I | GDGCHC | 3 cut(s) | 45, 1007, 1200 |
| Bsp143I | GATC | 8 cut(s) | 186, 250, 313, 352, 677, 919, 1084, 1162 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 484 |
| BspACI | CCGC | 8 cut(s) | 26, 29, 32, 50, 53, 68, 78, 292 |
| BspANI | GGCC | 2 cut(s) | 1005, 1237 |
| BspCNI | CTCAG | 4 cut(s) | 253, 362, 497, 1023 |
| BspDI | ATCGAT | 1 cut(s) | 831 |
| BspHI | TCATGA | 1 cut(s) | 310 |
| BspLI | GGNNCC | 3 cut(s) | 24, 505, 1005 |
| BspMAI | CTGCAG | 1 cut(s) | 586 |
| BspMI | ACCTGC | 1 cut(s) | 575 |
| BspOI | GCTAGC | 1 cut(s) | 1025 |
| BspPI | GGATC | 5 cut(s) | 308, 347, 685, 914, 1157 |
| BspQI | GCTCTTC | 1 cut(s) | 62 |
| BspTNI | GGTCTC | 1 cut(s) | 260 |
| BsrBI | CCGCTC | 2 cut(s) | 55, 80 |
| BssMI | GATC | 8 cut(s) | 186, 250, 313, 352, 677, 919, 1084, 1162 |
| Bst2UI | CCWGG | 2 cut(s) | 88, 1202 |
| Bst4CI | ACNGT | 2 cut(s) | 511, 1112 |
| Bst6I | CTCTTC | 2 cut(s) | 62, 341 |
| BstC8I | GCNNGC | 7 cut(s) | 82, 129, 296, 969, 1023, 1147, 1224 |
| BstDEI | CTNAG | 5 cut(s) | 261, 349, 484, 924, 1010 |
| BstEII | GGTNACC | 1 cut(s) | 559 |
| BstF5I | GGATG | 1 cut(s) | 96 |
| BstKTI | GATC | 8 cut(s) | 189, 253, 316, 355, 680, 922, 1087, 1165 |
| BstMAI | GTCTC | 1 cut(s) | 260 |
| BstMBI | GATC | 8 cut(s) | 186, 250, 313, 352, 677, 919, 1084, 1162 |
| BstMCI | CGRYCG | 1 cut(s) | 1238 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 31, 40, 49, 598, 1011 |
| BstNI | CCWGG | 2 cut(s) | 88, 1202 |
| BstNSI | RCATGY | 3 cut(s) | 378, 450, 764 |
| BstPI | GGTNACC | 1 cut(s) | 559 |
| BstSCI | CCNGG | 3 cut(s) | 86, 420, 1200 |
| BstSFI | CTRYAG | 2 cut(s) | 36, 582 |
| BstSLI | GKGCMC | 1 cut(s) | 1007 |
| BstV1I | GCAGC | 3 cut(s) | 414, 696, 943 |
| BstX2I | RGATCY | 2 cut(s) | 352, 919 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 94 |
| BstYI | RGATCY | 2 cut(s) | 352, 919 |
| BstZI | CGGCCG | 1 cut(s) | 1235 |
| Bsu15I | ATCGAT | 1 cut(s) | 831 |
| Bsu36I | CCTNAGG | 1 cut(s) | 261 |
| BsuRI | GGCC | 2 cut(s) | 1005, 1237 |
| BsuTUI | ATCGAT | 1 cut(s) | 831 |
| BtgZI | GCGATG | 1 cut(s) | 1002 |
| BtsCI | GGATG | 1 cut(s) | 96 |
| BtsI | GCAGTG | 1 cut(s) | 741 |
| BtsIMutI | CAGTG | 1 cut(s) | 741 |
| BveI | ACCTGC | 1 cut(s) | 575 |
| Cac8I | GCNNGC | 7 cut(s) | 82, 129, 296, 969, 1023, 1147, 1224 |
| CciI | TCATGA | 1 cut(s) | 310 |
| Cfr13I | GGNCC | 5 cut(s) | 242, 331, 769, 1003, 1004 |
| ClaI | ATCGAT | 1 cut(s) | 831 |
| Csp6I | GTAC | 2 cut(s) | 914, 1280 |
| CviQI | GTAC | 2 cut(s) | 914, 1280 |
| DdeI | CTNAG | 5 cut(s) | 261, 349, 484, 924, 1010 |
| DpnI | GATC | 8 cut(s) | 188, 252, 315, 354, 679, 921, 1086, 1164 |
| DpnII | GATC | 8 cut(s) | 186, 250, 313, 352, 677, 919, 1084, 1162 |
| EaeI | YGGCCR | 1 cut(s) | 1235 |
| EagI | CGGCCG | 1 cut(s) | 1235 |
| Eam1104I | CTCTTC | 2 cut(s) | 62, 341 |
| EarI | CTCTTC | 2 cut(s) | 62, 341 |
| EciI | GGCGGA | 1 cut(s) | 57 |
| EclXI | CGGCCG | 1 cut(s) | 1235 |
| Eco24I | GRGCYC | 1 cut(s) | 1007 |
| Eco31I | GGTCTC | 1 cut(s) | 260 |
| Eco47I | GGWCC | 3 cut(s) | 242, 331, 769 |
| Eco52I | CGGCCG | 1 cut(s) | 1235 |
| Eco57I | CTGAAG | 1 cut(s) | 1010 |
| Eco81I | CCTNAGG | 1 cut(s) | 261 |
| Eco91I | GGTNACC | 1 cut(s) | 559 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1004 |
| EcoO65I | GGTNACC | 1 cut(s) | 559 |
| EcoRII | CCWGG | 2 cut(s) | 86, 1200 |
| EcoT22I | ATGCAT | 1 cut(s) | 286 |
| EcoT38I | GRGCYC | 1 cut(s) | 1007 |
| FaqI | GGGAC | 1 cut(s) | 32 |
| FauI | CCCGC | 1 cut(s) | 57 |
| FauNDI | CATATG | 1 cut(s) | 106 |
| FbaI | TGATCA | 2 cut(s) | 186, 250 |
| Fnu4HI | GCNGC | 8 cut(s) | 26, 29, 32, 53, 78, 428, 685, 957 |
| FokI | GGATG | 1 cut(s) | 103 |
| FriOI | GRGCYC | 1 cut(s) | 1007 |
| Fsp4HI | GCNGC | 8 cut(s) | 26, 29, 32, 53, 78, 428, 685, 957 |
| FspBI | CTAG | 2 cut(s) | 1022, 1244 |
| GluI | GCNGC | 8 cut(s) | 26, 29, 32, 53, 78, 428, 685, 957 |
| GsaI | CCCAGC | 1 cut(s) | 1230 |
| HaeIII | GGCC | 2 cut(s) | 1005, 1237 |
| HapII | CCGG | 1 cut(s) | 422 |
| HincII | GTYRAC | 1 cut(s) | 1182 |
| HindII | GTYRAC | 1 cut(s) | 1182 |
| HindIII | AAGCTT | 1 cut(s) | 125 |
| HinfI | GANTC | 5 cut(s) | 98, 694, 896, 938, 1247 |
| HpaII | CCGG | 1 cut(s) | 422 |
| HphI | GGTGA | 2 cut(s) | 571, 793 |
| Hpy166II | GTNNAC | 4 cut(s) | 245, 331, 741, 1182 |
| Hpy188I | TCNGA | 5 cut(s) | 352, 357, 889, 1082, 1139 |
| Hpy188III | TCNNGA | 4 cut(s) | 149, 311, 716, 726 |
| Hpy8I | GTNNAC | 4 cut(s) | 245, 331, 741, 1182 |
| HpyAV | CCTTC | 3 cut(s) | 985, 1062, 1202 |
| HpyCH4III | ACNGT | 2 cut(s) | 511, 1112 |
| HpyCH4V | TGCA | 6 cut(s) | 230, 284, 364, 584, 592, 959 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 31, 40, 49, 598, 1011 |
| HpyF3I | CTNAG | 5 cut(s) | 261, 349, 484, 924, 1010 |
| Ksp22I | TGATCA | 2 cut(s) | 186, 250 |
| Kzo9I | GATC | 8 cut(s) | 186, 250, 313, 352, 677, 919, 1084, 1162 |
| LguI | GCTCTTC | 1 cut(s) | 62 |
| LmnI | GCTCC | 5 cut(s) | 22, 404, 503, 612, 1195 |
| Lsp1109I | GCAGC | 3 cut(s) | 414, 696, 943 |
| LweI | GCATC | 2 cut(s) | 968, 1230 |
| MaeI | CTAG | 2 cut(s) | 1022, 1244 |
| MaeIII | GTNAC | 1 cut(s) | 559 |
| MalI | GATC | 8 cut(s) | 188, 252, 315, 354, 679, 921, 1086, 1164 |
| MbiI | CCGCTC | 2 cut(s) | 55, 80 |
| MboI | GATC | 8 cut(s) | 186, 250, 313, 352, 677, 919, 1084, 1162 |
| MboII | GAAGA | 3 cut(s) | 49, 328, 809 |
| MfeI | CAATTG | 1 cut(s) | 498 |
| MflI | RGATCY | 2 cut(s) | 352, 919 |
| MhlI | GDGCHC | 3 cut(s) | 45, 1007, 1200 |
| MlyI | GAGTC | 3 cut(s) | 107, 703, 1256 |
| MmeI | TCCRAC | 1 cut(s) | 75 |
| Mph1103I | ATGCAT | 1 cut(s) | 286 |
| MroXI | GAANNNNTTC | 1 cut(s) | 11 |
| MseI | TTAA | 1 cut(s) | 641 |
| MslI | CAYNNNNRTG | 3 cut(s) | 89, 326, 512 |
| MspA1I | CMGCKG | 2 cut(s) | 294, 1076 |
| MspI | CCGG | 1 cut(s) | 422 |
| MspR9I | CCNGG | 3 cut(s) | 88, 422, 1202 |
| MunI | CAATTG | 1 cut(s) | 498 |
| Mva1269I | GAATGC | 3 cut(s) | 286, 1031, 1119 |
| MvaI | CCWGG | 2 cut(s) | 88, 1202 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 31, 40, 49, 598, 1011 |
| NciI | CCSGG | 1 cut(s) | 422 |
| NdeI | CATATG | 1 cut(s) | 106 |
| NdeII | GATC | 8 cut(s) | 186, 250, 313, 352, 677, 919, 1084, 1162 |
| NheI | GCTAGC | 1 cut(s) | 1021 |
| NlaIV | GGNNCC | 3 cut(s) | 24, 505, 1005 |
| NmuCI | GTSAC | 1 cut(s) | 559 |
| NsiI | ATGCAT | 1 cut(s) | 286 |
| NspI | RCATGY | 3 cut(s) | 378, 450, 764 |
| OliI | CACNNNNGTG | 1 cut(s) | 326 |
| PagI | TCATGA | 1 cut(s) | 310 |
| PaqCI | CACCTGC | 1 cut(s) | 575 |
| PciI | ACATGT | 2 cut(s) | 446, 760 |
| PciSI | GCTCTTC | 1 cut(s) | 62 |
| PctI | GAATGC | 3 cut(s) | 286, 1031, 1119 |
| PdmI | GAANNNNTTC | 1 cut(s) | 11 |
| PfeI | GAWTC | 2 cut(s) | 896, 938 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 395, 608 |
| PkrI | GCNGC | 8 cut(s) | 27, 30, 33, 54, 79, 429, 686, 958 |
| PleI | GAGTC | 3 cut(s) | 106, 702, 1255 |
| PpsI | GAGTC | 3 cut(s) | 106, 702, 1255 |
| PscI | ACATGT | 2 cut(s) | 446, 760 |
| Psp6I | CCWGG | 2 cut(s) | 86, 1200 |
| PspEI | GGTNACC | 1 cut(s) | 559 |
| PspFI | CCCAGC | 1 cut(s) | 1226 |
| PspGI | CCWGG | 2 cut(s) | 86, 1200 |
| PspN4I | GGNNCC | 3 cut(s) | 24, 505, 1005 |
| PspOMI | GGGCCC | 1 cut(s) | 1003 |
| PspPI | GGNCC | 5 cut(s) | 242, 331, 769, 1003, 1004 |
| PstI | CTGCAG | 1 cut(s) | 586 |
| PsuI | RGATCY | 2 cut(s) | 352, 919 |
| PvuII | CAGCTG | 1 cut(s) | 1076 |
| RsaI | GTAC | 2 cut(s) | 915, 1281 |
| RsaNI | GTAC | 2 cut(s) | 914, 1280 |
| RseI | CAYNNNNRTG | 3 cut(s) | 89, 326, 512 |
| SapI | GCTCTTC | 1 cut(s) | 62 |
| SaqAI | TTAA | 1 cut(s) | 641 |
| SatI | GCNGC | 8 cut(s) | 26, 29, 32, 53, 78, 428, 685, 957 |
| Sau3AI | GATC | 8 cut(s) | 186, 250, 313, 352, 677, 919, 1084, 1162 |
| Sau96I | GGNCC | 5 cut(s) | 242, 331, 769, 1003, 1004 |
| SchI | GAGTC | 3 cut(s) | 107, 703, 1256 |
| ScrFI | CCNGG | 3 cut(s) | 88, 422, 1202 |
| SduI | GDGCHC | 3 cut(s) | 45, 1007, 1200 |
| SfaNI | GCATC | 2 cut(s) | 968, 1230 |
| SfcI | CTRYAG | 2 cut(s) | 36, 582 |
| SinI | GGWCC | 3 cut(s) | 242, 331, 769 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 89, 326, 512 |
| SmlI | CTYRAG | 1 cut(s) | 716 |
| SmoI | CTYRAG | 1 cut(s) | 716 |
| SsiI | CCGC | 8 cut(s) | 26, 29, 32, 50, 53, 68, 78, 292 |
| SspMI | CTAG | 2 cut(s) | 1022, 1244 |
| StyD4I | CCNGG | 3 cut(s) | 86, 420, 1200 |
| TaaI | ACNGT | 2 cut(s) | 511, 1112 |
| TaqI | TCGA | 5 cut(s) | 15, 60, 725, 795, 831 |
| TauI | GCSGC | 5 cut(s) | 28, 31, 34, 55, 80 |
| TfiI | GAWTC | 2 cut(s) | 896, 938 |
| Tru1I | TTAA | 1 cut(s) | 641 |
| Tru9I | TTAA | 1 cut(s) | 641 |
| TscAI | CASTG | 1 cut(s) | 748 |
| TseFI | GTSAC | 1 cut(s) | 559 |
| TseI | GCWGC | 3 cut(s) | 427, 684, 956 |
| Tsp45I | GTSAC | 1 cut(s) | 559 |
| TspDTI | ATGAA | 2 cut(s) | 299, 909 |
| TspRI | CASTG | 1 cut(s) | 748 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 395, 608 |
| VpaK11BI | GGWCC | 3 cut(s) | 242, 331, 769 |
| XapI | RAATTY | 6 cut(s) | 7, 392, 605, 1168, 1267, 1308 |
| XceI | RCATGY | 3 cut(s) | 378, 450, 764 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 549 |
| XmnI | GAANNNNTTC | 1 cut(s) | 11 |
| XspI | CTAG | 2 cut(s) | 1022, 1244 |
| Zsp2I | ATGCAT | 1 cut(s) | 286 |