E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 201 |
| AatII | GACGTC | 1 cut(s) | 1772 |
| Acc16I | TGCGCA | 1 cut(s) | 2658 |
| Acc36I | ACCTGC | 1 cut(s) | 2163 |
| AccB1I | GGYRCC | 2 cut(s) | 814, 2512 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 825 |
| AccI | GTMKAC | 1 cut(s) | 462 |
| AccIII | TCCGGA | 1 cut(s) | 2713 |
| AciI | CCGC | 9 cut(s) | 852, 1208, 1430, 1454, 1595, 1952, 2263, 2559, 2705 |
| AclI | AACGTT | 1 cut(s) | 558 |
| AclWI | GGATC | 4 cut(s) | 724, 1276, 2579, 2592 |
| AcoI | YGGCCR | 1 cut(s) | 2260 |
| AcsI | RAATTY | 3 cut(s) | 62, 1351, 2253 |
| AcuI | CTGAAG | 7 cut(s) | 369, 389, 593, 1683, 1725, 2082, 2583 |
| AcyI | GRCGYC | 1 cut(s) | 1769 |
| AfaI | GTAC | 9 cut(s) | 412, 896, 1058, 1323, 1358, 1791, 1911, 1932, 2831 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 708, 825, 2272, 2616 |
| AflII | CTTAAG | 1 cut(s) | 467 |
| AflIII | ACRYGT | 2 cut(s) | 2024, 2826 |
| AgeI | ACCGGT | 1 cut(s) | 563 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 952 |
| AjnI | CCWGG | 4 cut(s) | 89, 403, 508, 1312 |
| AleI | CACNNNNGTG | 1 cut(s) | 2339 |
| Alw21I | GWGCWC | 1 cut(s) | 2190 |
| Alw26I | GTCTC | 2 cut(s) | 1077, 1432 |
| AlwI | GGATC | 4 cut(s) | 724, 1276, 2579, 2592 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 479 |
| Ama87I | CYCGRG | 1 cut(s) | 2524 |
| Aor13HI | TCCGGA | 1 cut(s) | 2713 |
| AoxI | GGCC | 8 cut(s) | 1190, 1647, 1671, 1884, 2036, 2199, 2260, 2859 |
| ApeKI | GCWGC | 5 cut(s) | 129, 683, 1623, 2389, 2719 |
| ApoI | RAATTY | 3 cut(s) | 62, 1351, 2253 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2477, 2509 |
| AsiGI | ACCGGT | 1 cut(s) | 563 |
| AspLEI | GCGC | 1 cut(s) | 2659 |
| AspS9I | GGNCC | 4 cut(s) | 954, 1190, 2199, 2859 |
| AsuHPI | GGTGA | 6 cut(s) | 398, 607, 1936, 2218, 2599, 2738 |
| AvaI | CYCGRG | 1 cut(s) | 2524 |
| AvaII | GGWCC | 1 cut(s) | 954 |
| BaeGI | GKGCMC | 3 cut(s) | 819, 2517, 2872 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 969, 1002 |
| BamHI | GGATCC | 1 cut(s) | 2584 |
| BanI | GGYRCC | 2 cut(s) | 814, 2512 |
| BanII | GRGCYC | 3 cut(s) | 1304, 2190, 2461 |
| BbsI | GAAGAC | 1 cut(s) | 357 |
| Bbv12I | GWGCWC | 1 cut(s) | 2190 |
| BbvCI | CCTCAGC | 1 cut(s) | 1668 |
| BbvI | GCAGC | 5 cut(s) | 116, 695, 1635, 2376, 2731 |
| BccI | CCATC | 5 cut(s) | 134, 377, 1241, 2237, 2596 |
| BceAI | ACGGC | 1 cut(s) | 1178 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1733, 1767 |
| BciT130I | CCWGG | 4 cut(s) | 91, 405, 510, 1314 |
| BciVI | GTATCC | 2 cut(s) | 970, 1320 |
| BclI | TGATCA | 1 cut(s) | 2134 |
| BcoDI | GTCTC | 2 cut(s) | 1077, 1432 |
| BfaI | CTAG | 4 cut(s) | 50, 56, 291, 2899 |
| BfmI | CTRYAG | 2 cut(s) | 273, 1094 |
| BfrI | CTTAAG | 1 cut(s) | 467 |
| BfuAI | ACCTGC | 1 cut(s) | 2163 |
| BfuI | GTATCC | 2 cut(s) | 970, 1320 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2867 |
| BisI | GCNGC | 7 cut(s) | 130, 684, 852, 1624, 2263, 2390, 2720 |
| BlsI | GCNGC | 7 cut(s) | 131, 685, 853, 1625, 2264, 2391, 2721 |
| Bme1390I | CCNGG | 4 cut(s) | 91, 405, 510, 1314 |
| Bme18I | GGWCC | 1 cut(s) | 954 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 952 |
| BmeT110I | CYCGRG | 1 cut(s) | 2524 |
| BmgT120I | GGNCC | 4 cut(s) | 954, 1190, 2199, 2859 |
| BmiI | GGNNCC | 6 cut(s) | 669, 816, 1301, 1861, 2514, 2586 |
| BmrFI | CCNGG | 4 cut(s) | 91, 405, 510, 1314 |
| BmsI | GCATC | 6 cut(s) | 6, 684, 793, 1944, 2002, 2376 |
| BpiI | GAAGAC | 1 cut(s) | 357 |
| BpmI | CTGGAG | 2 cut(s) | 772, 924 |
| Bpu10I | CCTNAGC | 2 cut(s) | 456, 1668 |
| BpuEI | CTTGAG | 1 cut(s) | 645 |
| BsaAI | YACGTR | 1 cut(s) | 241 |
| BsaBI | GATNNNNATC | 2 cut(s) | 948, 2133 |
| BsaHI | GRCGYC | 1 cut(s) | 1769 |
| BsaJI | CCNNGG | 3 cut(s) | 78, 403, 1903 |
| BsaWI | WCCGGW | 3 cut(s) | 563, 2609, 2713 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1040, 1070, 1511, 1541 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 708, 825, 2272, 2616 |
| Bse118I | RCCGGY | 2 cut(s) | 563, 1175 |
| Bse1I | ACTGG | 4 cut(s) | 755, 840, 1586, 1624 |
| Bse3DI | GCAATG | 2 cut(s) | 1449, 1756 |
| Bse8I | GATNNNNATC | 2 cut(s) | 948, 2133 |
| BseAI | TCCGGA | 1 cut(s) | 2713 |
| BseBI | CCWGG | 4 cut(s) | 91, 405, 510, 1314 |
| BseDI | CCNNGG | 3 cut(s) | 78, 403, 1903 |
| BseGI | GGATG | 9 cut(s) | 21, 340, 388, 645, 769, 808, 2229, 2299, 2544 |
| BseJI | GATNNNNATC | 2 cut(s) | 948, 2133 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 708, 825, 2272, 2616 |
| BseMI | GCAATG | 2 cut(s) | 1449, 1756 |
| BseMII | CTCAG | 2 cut(s) | 1296, 1659 |
| BseNI | ACTGG | 4 cut(s) | 755, 840, 1586, 1624 |
| BseRI | GAGGAG | 4 cut(s) | 353, 1448, 1472, 1535 |
| BseSI | GKGCMC | 3 cut(s) | 819, 2517, 2872 |
| BseX3I | CGGCCG | 1 cut(s) | 2260 |
| BseXI | GCAGC | 5 cut(s) | 116, 695, 1635, 2376, 2731 |
| BsgI | GTGCAG | 1 cut(s) | 2375 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2263 |
| BshFI | GGCC | 8 cut(s) | 1192, 1649, 1673, 1886, 2038, 2201, 2262, 2861 |
| BshNI | GGYRCC | 2 cut(s) | 814, 2512 |
| BshTI | ACCGGT | 1 cut(s) | 563 |
| BsiEI | CGRYCG | 1 cut(s) | 2263 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2190 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2524 |
| BsiSI | CCGG | 4 cut(s) | 564, 1176, 2610, 2714 |
| BslFI | GGGAC | 2 cut(s) | 1487, 2822 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 708, 825, 2272, 2616 |
| BsmAI | GTCTC | 2 cut(s) | 1077, 1432 |
| BsmFI | GGGAC | 2 cut(s) | 1487, 2822 |
| BsmI | GAATGC | 2 cut(s) | 91, 2709 |
| BsnI | GGCC | 8 cut(s) | 1192, 1649, 1673, 1886, 2038, 2201, 2262, 2861 |
| BsoBI | CYCGRG | 1 cut(s) | 2524 |
| Bsp1286I | GDGCHC | 6 cut(s) | 819, 1304, 2190, 2461, 2517, 2872 |
| Bsp13I | TCCGGA | 1 cut(s) | 2713 |
| Bsp1407I | TGTACA | 2 cut(s) | 894, 2829 |
| Bsp143I | GATC | 6 cut(s) | 32, 729, 1135, 1268, 2134, 2584 |
| Bsp19I | CCATGG | 1 cut(s) | 1903 |
| BspACI | CCGC | 9 cut(s) | 852, 1208, 1430, 1454, 1595, 1952, 2263, 2559, 2705 |
| BspANI | GGCC | 8 cut(s) | 1192, 1649, 1673, 1886, 2038, 2201, 2262, 2861 |
| BspCNI | CTCAG | 2 cut(s) | 1297, 1660 |
| BspEI | TCCGGA | 1 cut(s) | 2713 |
| BspHI | TCATGA | 1 cut(s) | 2137 |
| BspLI | GGNNCC | 6 cut(s) | 669, 816, 1301, 1861, 2514, 2586 |
| BspMI | ACCTGC | 1 cut(s) | 2163 |
| BspPI | GGATC | 4 cut(s) | 724, 1276, 2579, 2592 |
| BspQI | GCTCTTC | 1 cut(s) | 1389 |
| BspT107I | GGYRCC | 2 cut(s) | 814, 2512 |
| BspTI | CTTAAG | 1 cut(s) | 467 |
| BsrDI | GCAATG | 2 cut(s) | 1449, 1756 |
| BsrFI | RCCGGY | 2 cut(s) | 563, 1175 |
| BsrGI | TGTACA | 2 cut(s) | 894, 2829 |
| BsrI | ACTGG | 4 cut(s) | 755, 840, 1586, 1624 |
| BssAI | RCCGGY | 2 cut(s) | 563, 1175 |
| BssECI | CCNNGG | 3 cut(s) | 78, 403, 1903 |
| BssMI | GATC | 6 cut(s) | 32, 729, 1135, 1268, 2134, 2584 |
| BssNAI | GTATAC | 1 cut(s) | 463 |
| BssNI | GRCGYC | 1 cut(s) | 1769 |
| BssT1I | CCWWGG | 1 cut(s) | 1903 |
| Bst1107I | GTATAC | 1 cut(s) | 463 |
| Bst2UI | CCWGG | 4 cut(s) | 91, 405, 510, 1314 |
| Bst4CI | ACNGT | 6 cut(s) | 274, 1107, 1794, 2090, 2548, 2686 |
| Bst6I | CTCTTC | 2 cut(s) | 1389, 2588 |
| BstACI | GRCGYC | 1 cut(s) | 1769 |
| BstAFI | CTTAAG | 1 cut(s) | 467 |
| BstAUI | TGTACA | 2 cut(s) | 894, 2829 |
| BstBAI | YACGTR | 1 cut(s) | 241 |
| BstC8I | GCNNGC | 8 cut(s) | 21, 488, 518, 1194, 1647, 1756, 2707, 2821 |
| BstDEI | CTNAG | 8 cut(s) | 441, 456, 1305, 1467, 1668, 2382, 2418, 2802 |
| BstDSI | CCRYGG | 1 cut(s) | 1903 |
| BstEII | GGTNACC | 1 cut(s) | 2224 |
| BstF5I | GGATG | 9 cut(s) | 21, 340, 388, 645, 769, 808, 2229, 2299, 2544 |
| BstHHI | GCGC | 1 cut(s) | 2659 |
| BstKTI | GATC | 6 cut(s) | 35, 732, 1138, 1271, 2137, 2587 |
| BstMAI | GTCTC | 2 cut(s) | 1077, 1432 |
| BstMBI | GATC | 6 cut(s) | 32, 729, 1135, 1268, 2134, 2584 |
| BstMCI | CGRYCG | 1 cut(s) | 2263 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 223, 577, 1709, 1755, 1958, 2480, 2867 |
| BstNI | CCWGG | 4 cut(s) | 91, 405, 510, 1314 |
| BstNSI | RCATGY | 2 cut(s) | 2028, 2830 |
| BstPI | GGTNACC | 1 cut(s) | 2224 |
| BstSCI | CCNGG | 4 cut(s) | 89, 403, 508, 1312 |
| BstSFI | CTRYAG | 2 cut(s) | 273, 1094 |
| BstSLI | GKGCMC | 3 cut(s) | 819, 2517, 2872 |
| BstV1I | GCAGC | 5 cut(s) | 116, 695, 1635, 2376, 2731 |
| BstV2I | GAAGAC | 1 cut(s) | 357 |
| BstX2I | RGATCY | 2 cut(s) | 729, 2584 |
| BstYI | RGATCY | 2 cut(s) | 729, 2584 |
| BstZ17I | GTATAC | 1 cut(s) | 463 |
| BstZI | CGGCCG | 1 cut(s) | 2260 |
| BsuI | GTATCC | 2 cut(s) | 970, 1320 |
| BsuRI | GGCC | 8 cut(s) | 1192, 1649, 1673, 1886, 2038, 2201, 2262, 2861 |
| BtgI | CCRYGG | 1 cut(s) | 1903 |
| BtsCI | GGATG | 9 cut(s) | 21, 340, 388, 645, 769, 808, 2229, 2299, 2544 |
| BtsIMutI | CAGTG | 2 cut(s) | 1577, 1593 |
| BveI | ACCTGC | 1 cut(s) | 2163 |
| Cac8I | GCNNGC | 8 cut(s) | 21, 488, 518, 1194, 1647, 1756, 2707, 2821 |
| CaiI | CAGNNNCTG | 1 cut(s) | 479 |
| CciI | TCATGA | 1 cut(s) | 2137 |
| CfoI | GCGC | 1 cut(s) | 2659 |
| Cfr10I | RCCGGY | 2 cut(s) | 563, 1175 |
| Cfr13I | GGNCC | 4 cut(s) | 954, 1190, 2199, 2859 |
| CseI | GACGC | 1 cut(s) | 2317 |
| Csp6I | GTAC | 9 cut(s) | 411, 895, 1057, 1322, 1357, 1790, 1910, 1931, 2830 |
| CspAI | ACCGGT | 1 cut(s) | 563 |
| CviQI | GTAC | 9 cut(s) | 411, 895, 1057, 1322, 1357, 1790, 1910, 1931, 2830 |
| DdeI | CTNAG | 8 cut(s) | 441, 456, 1305, 1467, 1668, 2382, 2418, 2802 |
| DpnI | GATC | 6 cut(s) | 34, 731, 1137, 1270, 2136, 2586 |
| DpnII | GATC | 6 cut(s) | 32, 729, 1135, 1268, 2134, 2584 |
| DraI | TTTAAA | 3 cut(s) | 123, 1819, 2890 |
| DriI | GACNNNNNGTC | 1 cut(s) | 952 |
| EaeI | YGGCCR | 1 cut(s) | 2260 |
| EagI | CGGCCG | 1 cut(s) | 2260 |
| Eam1104I | CTCTTC | 2 cut(s) | 1389, 2588 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 952 |
| EarI | CTCTTC | 2 cut(s) | 1389, 2588 |
| EciI | GGCGGA | 1 cut(s) | 1445 |
| Ecl136II | GAGCTC | 1 cut(s) | 2188 |
| EclXI | CGGCCG | 1 cut(s) | 2260 |
| Eco130I | CCWWGG | 1 cut(s) | 1903 |
| Eco147I | AGGCCT | 1 cut(s) | 1649 |
| Eco24I | GRGCYC | 3 cut(s) | 1304, 2190, 2461 |
| Eco32I | GATATC | 2 cut(s) | 345, 2325 |
| Eco47I | GGWCC | 1 cut(s) | 954 |
| Eco52I | CGGCCG | 1 cut(s) | 2260 |
| Eco53kI | GAGCTC | 1 cut(s) | 2188 |
| Eco57I | CTGAAG | 7 cut(s) | 369, 389, 593, 1683, 1725, 2082, 2583 |
| Eco88I | CYCGRG | 1 cut(s) | 2524 |
| Eco91I | GGTNACC | 1 cut(s) | 2224 |
| EcoICRI | GAGCTC | 1 cut(s) | 2188 |
| EcoO65I | GGTNACC | 1 cut(s) | 2224 |
| EcoRII | CCWGG | 4 cut(s) | 89, 403, 508, 1312 |
| EcoRV | GATATC | 2 cut(s) | 345, 2325 |
| EcoT14I | CCWWGG | 1 cut(s) | 1903 |
| EcoT22I | ATGCAT | 2 cut(s) | 808, 2757 |
| EcoT38I | GRGCYC | 3 cut(s) | 1304, 2190, 2461 |
| ErhI | CCWWGG | 1 cut(s) | 1903 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1460, 1492 |
| FaqI | GGGAC | 2 cut(s) | 1487, 2822 |
| FauI | CCCGC | 2 cut(s) | 2566, 2698 |
| FbaI | TGATCA | 1 cut(s) | 2134 |
| FblI | GTMKAC | 1 cut(s) | 462 |
| Fnu4HI | GCNGC | 7 cut(s) | 130, 684, 852, 1624, 2263, 2390, 2720 |
| FokI | GGATG | 9 cut(s) | 28, 347, 395, 652, 776, 815, 2216, 2306, 2551 |
| FriOI | GRGCYC | 3 cut(s) | 1304, 2190, 2461 |
| Fsp4HI | GCNGC | 7 cut(s) | 130, 684, 852, 1624, 2263, 2390, 2720 |
| FspBI | CTAG | 4 cut(s) | 50, 56, 291, 2899 |
| FspI | TGCGCA | 1 cut(s) | 2658 |
| GlaI | GCGC | 1 cut(s) | 2658 |
| GluI | GCNGC | 7 cut(s) | 130, 684, 852, 1624, 2263, 2390, 2720 |
| GsuI | CTGGAG | 2 cut(s) | 772, 924 |
| HaeIII | GGCC | 8 cut(s) | 1192, 1649, 1673, 1886, 2038, 2201, 2262, 2861 |
| HapII | CCGG | 4 cut(s) | 564, 1176, 2610, 2714 |
| HgaI | GACGC | 1 cut(s) | 2317 |
| HhaI | GCGC | 1 cut(s) | 2659 |
| Hin1I | GRCGYC | 1 cut(s) | 1769 |
| Hin6I | GCGC | 1 cut(s) | 2657 |
| HinP1I | GCGC | 1 cut(s) | 2657 |
| HincII | GTYRAC | 1 cut(s) | 2544 |
| HindII | GTYRAC | 1 cut(s) | 2544 |
| HindIII | AAGCTT | 1 cut(s) | 2044 |
| HinfI | GANTC | 7 cut(s) | 263, 353, 604, 1541, 1574, 2443, 2601 |
| HpaI | GTTAAC | 1 cut(s) | 2544 |
| HpaII | CCGG | 4 cut(s) | 564, 1176, 2610, 2714 |
| HphI | GGTGA | 6 cut(s) | 398, 607, 1936, 2218, 2599, 2738 |
| Hpy166II | GTNNAC | 7 cut(s) | 463, 1840, 1910, 2544, 2554, 2632, 2832 |
| Hpy8I | GTNNAC | 7 cut(s) | 463, 1840, 1910, 2544, 2554, 2632, 2832 |
| HpyCH4III | ACNGT | 6 cut(s) | 274, 1107, 1794, 2090, 2548, 2686 |
| HpyCH4IV | ACGT | 4 cut(s) | 109, 240, 558, 1769 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 223, 577, 1709, 1755, 1958, 2480, 2867 |
| HpyF3I | CTNAG | 8 cut(s) | 441, 456, 1305, 1467, 1668, 2382, 2418, 2802 |
| HpySE526I | ACGT | 4 cut(s) | 109, 240, 558, 1769 |
| Hsp92I | GRCGYC | 1 cut(s) | 1769 |
| HspAI | GCGC | 1 cut(s) | 2657 |
| Kpn2I | TCCGGA | 1 cut(s) | 2713 |
| Ksp22I | TGATCA | 1 cut(s) | 2134 |
| KspAI | GTTAAC | 1 cut(s) | 2544 |
| Kzo9I | GATC | 6 cut(s) | 32, 729, 1135, 1268, 2134, 2584 |
| LguI | GCTCTTC | 1 cut(s) | 1389 |
| LmnI | GCTCC | 6 cut(s) | 498, 528, 1299, 2077, 2185, 2716 |
| Lsp1109I | GCAGC | 5 cut(s) | 116, 695, 1635, 2376, 2731 |
| LweI | GCATC | 6 cut(s) | 6, 684, 793, 1944, 2002, 2376 |
| MaeI | CTAG | 4 cut(s) | 50, 56, 291, 2899 |
| MaeII | ACGT | 4 cut(s) | 109, 240, 558, 1769 |
| MaeIII | GTNAC | 6 cut(s) | 559, 595, 653, 1588, 2224, 2686 |
| MalI | GATC | 6 cut(s) | 34, 731, 1137, 1270, 2136, 2586 |
| MboI | GATC | 6 cut(s) | 32, 729, 1135, 1268, 2134, 2584 |
| MfeI | CAATTG | 1 cut(s) | 672 |
| MflI | RGATCY | 2 cut(s) | 729, 2584 |
| MhlI | GDGCHC | 6 cut(s) | 819, 1304, 2190, 2461, 2517, 2872 |
| MlyI | GAGTC | 2 cut(s) | 347, 2595 |
| MmeI | TCCRAC | 2 cut(s) | 1674, 2471 |
| Mph1103I | ATGCAT | 2 cut(s) | 808, 2757 |
| MroI | TCCGGA | 1 cut(s) | 2713 |
| MslI | CAYNNNNRTG | 3 cut(s) | 710, 2339, 2342 |
| MspA1I | CMGCKG | 2 cut(s) | 1595, 2561 |
| MspCI | CTTAAG | 1 cut(s) | 467 |
| MspI | CCGG | 4 cut(s) | 564, 1176, 2610, 2714 |
| MspR9I | CCNGG | 4 cut(s) | 91, 405, 510, 1314 |
| MssI | GTTTAAAC | 1 cut(s) | 1819 |
| MunI | CAATTG | 1 cut(s) | 672 |
| Mva1269I | GAATGC | 2 cut(s) | 91, 2709 |
| MvaI | CCWGG | 4 cut(s) | 91, 405, 510, 1314 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 223, 577, 1709, 1755, 1958, 2480, 2867 |
| NcoI | CCATGG | 1 cut(s) | 1903 |
| NdeII | GATC | 6 cut(s) | 32, 729, 1135, 1268, 2134, 2584 |
| NlaIV | GGNNCC | 6 cut(s) | 669, 816, 1301, 1861, 2514, 2586 |
| NmeAIII | GCCGAG | 2 cut(s) | 59, 2887 |
| NmuCI | GTSAC | 3 cut(s) | 595, 1588, 2224 |
| NsbI | TGCGCA | 1 cut(s) | 2658 |
| NsiI | ATGCAT | 2 cut(s) | 808, 2757 |
| NspI | RCATGY | 2 cut(s) | 2028, 2830 |
| OliI | CACNNNNGTG | 1 cut(s) | 2339 |
| PagI | TCATGA | 1 cut(s) | 2137 |
| PceI | AGGCCT | 1 cut(s) | 1649 |
| PciI | ACATGT | 2 cut(s) | 2024, 2826 |
| PciSI | GCTCTTC | 1 cut(s) | 1389 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1072 |
| PctI | GAATGC | 2 cut(s) | 91, 2709 |
| PfeI | GAWTC | 5 cut(s) | 263, 604, 1541, 1574, 2443 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 825 |
| PinAI | ACCGGT | 1 cut(s) | 563 |
| PkrI | GCNGC | 7 cut(s) | 131, 685, 853, 1625, 2264, 2391, 2721 |
| PleI | GAGTC | 2 cut(s) | 347, 2595 |
| PmeI | GTTTAAAC | 1 cut(s) | 1819 |
| PpsI | GAGTC | 2 cut(s) | 347, 2595 |
| Ppu21I | YACGTR | 1 cut(s) | 241 |
| PscI | ACATGT | 2 cut(s) | 2024, 2826 |
| PsiI | TTATAA | 1 cut(s) | 201 |
| Psp124BI | GAGCTC | 1 cut(s) | 2190 |
| Psp1406I | AACGTT | 1 cut(s) | 558 |
| Psp6I | CCWGG | 4 cut(s) | 89, 403, 508, 1312 |
| PspEI | GGTNACC | 1 cut(s) | 2224 |
| PspGI | CCWGG | 4 cut(s) | 89, 403, 508, 1312 |
| PspN4I | GGNNCC | 6 cut(s) | 669, 816, 1301, 1861, 2514, 2586 |
| PspPI | GGNCC | 4 cut(s) | 954, 1190, 2199, 2859 |
| PstNI | CAGNNNCTG | 1 cut(s) | 479 |
| PsuI | RGATCY | 2 cut(s) | 729, 2584 |
| RsaI | GTAC | 9 cut(s) | 412, 896, 1058, 1323, 1358, 1791, 1911, 1932, 2831 |
| RsaNI | GTAC | 9 cut(s) | 411, 895, 1057, 1322, 1357, 1790, 1910, 1931, 2830 |
| RseI | CAYNNNNRTG | 3 cut(s) | 710, 2339, 2342 |
| SacI | GAGCTC | 1 cut(s) | 2190 |
| SapI | GCTCTTC | 1 cut(s) | 1389 |
| SatI | GCNGC | 7 cut(s) | 130, 684, 852, 1624, 2263, 2390, 2720 |
| Sau3AI | GATC | 6 cut(s) | 32, 729, 1135, 1268, 2134, 2584 |
| Sau96I | GGNCC | 4 cut(s) | 954, 1190, 2199, 2859 |
| SchI | GAGTC | 2 cut(s) | 347, 2595 |
| ScrFI | CCNGG | 4 cut(s) | 91, 405, 510, 1314 |
| SduI | GDGCHC | 6 cut(s) | 819, 1304, 2190, 2461, 2517, 2872 |
| SfaNI | GCATC | 6 cut(s) | 6, 684, 793, 1944, 2002, 2376 |
| SfcI | CTRYAG | 2 cut(s) | 273, 1094 |
| SinI | GGWCC | 1 cut(s) | 954 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 710, 2339, 2342 |
| SmlI | CTYRAG | 2 cut(s) | 467, 660 |
| SmoI | CTYRAG | 2 cut(s) | 467, 660 |
| SseBI | AGGCCT | 1 cut(s) | 1649 |
| SsiI | CCGC | 9 cut(s) | 852, 1208, 1430, 1454, 1595, 1952, 2263, 2559, 2705 |
| SspMI | CTAG | 4 cut(s) | 50, 56, 291, 2899 |
| SstI | GAGCTC | 1 cut(s) | 2190 |
| StuI | AGGCCT | 1 cut(s) | 1649 |
| StyD4I | CCNGG | 4 cut(s) | 89, 403, 508, 1312 |
| StyI | CCWWGG | 1 cut(s) | 1903 |
| TaaI | ACNGT | 6 cut(s) | 274, 1107, 1794, 2090, 2548, 2686 |
| TaiI | ACGT | 4 cut(s) | 112, 243, 561, 1772 |
| TaqI | TCGA | 5 cut(s) | 1075, 1743, 1875, 1881, 2591 |
| TaqII | GACCGA | 1 cut(s) | 942 |
| TatI | WGTACW | 2 cut(s) | 894, 2829 |
| TauI | GCSGC | 2 cut(s) | 854, 2265 |
| TfiI | GAWTC | 5 cut(s) | 263, 604, 1541, 1574, 2443 |
| TscAI | CASTG | 2 cut(s) | 1584, 1593 |
| TseFI | GTSAC | 3 cut(s) | 595, 1588, 2224 |
| TseI | GCWGC | 5 cut(s) | 129, 683, 1623, 2389, 2719 |
| Tsp45I | GTSAC | 3 cut(s) | 595, 1588, 2224 |
| TspDTI | ATGAA | 9 cut(s) | 111, 617, 656, 1617, 2139, 2330, 2395, 2569, 2777 |
| TspGWI | ACGGA | 1 cut(s) | 52 |
| TspRI | CASTG | 2 cut(s) | 1584, 1593 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 825 |
| Vha464I | CTTAAG | 1 cut(s) | 467 |
| VpaK11BI | GGWCC | 1 cut(s) | 954 |
| XapI | RAATTY | 3 cut(s) | 62, 1351, 2253 |
| XceI | RCATGY | 2 cut(s) | 2028, 2830 |
| XmiI | GTMKAC | 1 cut(s) | 462 |
| XspI | CTAG | 4 cut(s) | 50, 56, 291, 2899 |
| ZraI | GACGTC | 1 cut(s) | 1770 |
| Zsp2I | ATGCAT | 2 cut(s) | 808, 2757 |