Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000829.1

Orthogroup ID

OG0000395

Physical Location & Seq

Genomic Coordinates Forward (+)

77357 .. 77887

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000829.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atgaaacgaagcaatgtagaagacgatgatgaagatattagaggacccagccagcaatctgaacctaagaaaccttctcctgaacaaaaagtaaaggaaaacgaagatcaagtagaacaagaagatcaagaagaagaagaagaagaagaagaagaagaagaagaaatagaagatgatgactataatgacggccaagatcaagagccaaataacaaactacttgattcgatcaaacccatcaatcctattagtgtcataaccttaatggagccaggtcatcccggagtgcttgattgcccaatttgctatgaacctttaactgtcccagttttccagtgtgacgataatggccatctaatttgctcttcctgccaattcaaaatatataaatgtcccttgtgttctggccccttcagctctaagcgttgtctggtcattgagaagttcttggaatcaagtacatcatgtcaaaataaccaattaccacctgtacgtcagagtcataaccttaacagaaccaacgttgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

176

Amino Acids

20.05

Weight (kDa)

4.24

Isoelectric Point (pI)

87.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66610 AT1G66610 AT1G66620 AT1G66630 AT1G66650 AT1G66660 AT1G66660 AT5G37870 AT5G37890 AT5G37900 AT5G37910 AT5G37930 AT5G62800 AT5G62800
fragaria_vesca	FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_2g03850 FvH4_2g04470 FvH4_2g04471
malus_domestica	MD09G1260200.v1.1 MD09G1260400.v1.1 MD10G1106400.v1.1
prunus_persica	Prupe.3G152000_v2.0.a1 Prupe.3G152100_v2.0.a1 Prupe.3G152100_v2.0.a1 Prupe.3G152100_v2.0.a1 Prupe.8G145400_v2.0.a1 Prupe.8G145500_v2.0.a1
pyrus_communis	pycom09g17480 pycom09g17490 pycom10g09160
rosa_chinensis	RchiOBHm_Chr2g0111691 RchiOBHm_Chr3g0448681 RchiOBHm_Chr3g0493571 RchiOBHm_Chr6g0252861 RchiOBHm_Chr6g0252871 RchiOBHm_Chr6g0253841 RchiOBHm_Chr6g0253921 RchiOBHm_Chr6g0253941
rosa_laevigata	RLG00000007595 RLG00000014953 RLG00000014955 RLG00000014957 RLG00000014958 RLG00000015058 RLG00000017917 RLG00000022703
rosa_multiflora	Rmu_sc0000829.1_g000012 Rmu_sc0000829.1_g000015 Rmu_sc0000829.1_g000016 Rmu_sc0000927.1_g000006 Rmu_sc0001716.1_g000004 Rmu_sc0003921.1_g000007
rosa_roxburghii	Rroxscaffold_4G00307570 Rroxscaffold_6G00391470 Rroxscaffold_6G00426970 Rroxscaffold_7G00211390 Rroxscaffold_7G00211420 Rroxscaffold_7G00211430 Rroxscaffold_7G00212350 Rroxscaffold_7G00212370
rosa_rugosa	Rorug02G0175400 Rorug02G0615300 Rorug03G0262600 Rorug03G0262700 Rorug05G0539200 Rorug05G0539400 Rorug05G0548300 Rorug05G0548400 Rorug05G0548500 Rorug05G0548600
rosa_samantha	Rh2BG240600 Rh3AG014100 Rh3AG311400 Rh3BG013900 Rh3BG347300 Rh3CG345400 Rh3DG347600 Rh6AG055200 Rh6AG063900 Rh6AG064600 Rh6AG064800 Rh6BG049400 Rh6BG049500 Rh6BG057700 Rh6BG058000 Rh6CG048200 Rh6CG048300 Rh6CG057600 Rh6CG057900 Rh6DG043800 Rh6DG043900
rosa_wichuraiana	Rw2G017640 Rw6G005000 Rw6G005670 Rw6G005710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	522
AcoI	YGGCCR	2 cut(s)	190, 349
AcuI	CTGAAG	1 cut(s)	397
AfaI	GTAC	2 cut(s)	460, 492
AgsI	TTSAA	1 cut(s)	379
AjnI	CCWGG	1 cut(s)	271
AluBI	AGCT	1 cut(s)	417
AluI	AGCT	1 cut(s)	417
AoxI	GGCC	3 cut(s)	190, 349, 406
AspS9I	GGNCC	2 cut(s)	44, 407
AsuC2I	CCSGG	1 cut(s)	282
AvaII	GGWCC	1 cut(s)	44
BalI	TGGCCA	1 cut(s)	351
BbsI	GAAGAC	1 cut(s)	27
BccI	CCATC	2 cut(s)	245, 360
BceAI	ACGGC	1 cut(s)	205
BciT130I	CCWGG	1 cut(s)	273
BcnI	CCSGG	1 cut(s)	282
Bme1390I	CCNGG	2 cut(s)	273, 282
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	2 cut(s)	44, 407
BmiI	GGNNCC	3 cut(s)	46, 270, 409
BmrFI	CCNGG	2 cut(s)	273, 282
BmrI	ACTGGG	1 cut(s)	320
BmuI	ACTGGG	1 cut(s)	320
BpiI	GAAGAC	1 cut(s)	27
BpuMI	CCSGG	1 cut(s)	282
Bse1I	ACTGG	2 cut(s)	326, 334
Bse3DI	GCAATG	1 cut(s)	19
BseBI	CCWGG	1 cut(s)	273
BseGI	GGATG	1 cut(s)	277
BseMI	GCAATG	1 cut(s)	19
BseNI	ACTGG	2 cut(s)	326, 334
BseYI	CCCAGC	1 cut(s)	47
BshFI	GGCC	3 cut(s)	192, 351, 408
BsiSI	CCGG	1 cut(s)	282
BslFI	GGGAC	2 cut(s)	308, 378
BsmFI	GGGAC	2 cut(s)	308, 378
BsnI	GGCC	3 cut(s)	192, 351, 408
Bsp143I	GATC	4 cut(s)	106, 124, 196, 228
BspANI	GGCC	3 cut(s)	192, 351, 408
BspLI	GGNNCC	3 cut(s)	46, 270, 409
BspQI	GCTCTTC	1 cut(s)	370
BsrDI	GCAATG	1 cut(s)	19
BsrI	ACTGG	2 cut(s)	326, 334
BssMI	GATC	4 cut(s)	106, 124, 196, 228
Bst2UI	CCWGG	1 cut(s)	273
Bst4CI	ACNGT	1 cut(s)	322
Bst6I	CTCTTC	1 cut(s)	370
BstC8I	GCNNGC	1 cut(s)	53
BstDEI	CTNAG	2 cut(s)	66, 420
BstF5I	GGATG	1 cut(s)	277
BstKTI	GATC	4 cut(s)	109, 127, 199, 231
BstMBI	GATC	4 cut(s)	106, 124, 196, 228
BstMWI	GCNNNNNNNGC	3 cut(s)	303, 369, 414
BstNI	CCWGG	1 cut(s)	273
BstSCI	CCNGG	2 cut(s)	271, 280
BstV2I	GAAGAC	1 cut(s)	27
BsuRI	GGCC	3 cut(s)	192, 351, 408
BtsCI	GGATG	1 cut(s)	277
BtsIMutI	CAGTG	1 cut(s)	341
Cac8I	GCNNGC	1 cut(s)	53
Cfr13I	GGNCC	2 cut(s)	44, 407
Csp6I	GTAC	2 cut(s)	459, 491
CviAII	CATG	1 cut(s)	465
CviJI	RGCY	7 cut(s)	51, 192, 205, 271, 351, 408, 417
CviKI_1	RGCY	7 cut(s)	51, 192, 205, 271, 351, 408, 417
CviQI	GTAC	2 cut(s)	459, 491
DdeI	CTNAG	2 cut(s)	66, 420
DpnI	GATC	4 cut(s)	108, 126, 198, 230
DpnII	GATC	4 cut(s)	106, 124, 196, 228
EaeI	YGGCCR	2 cut(s)	190, 349
Eam1104I	CTCTTC	1 cut(s)	370
EarI	CTCTTC	1 cut(s)	370
Eco47I	GGWCC	1 cut(s)	44
Eco57I	CTGAAG	1 cut(s)	397
EcoO109I	RGGNCCY	1 cut(s)	44
EcoRII	CCWGG	1 cut(s)	271
FaeI	CATG	1 cut(s)	468
FaiI	YATR	7 cut(s)	183, 257, 309, 385, 387, 466, 504
FaqI	GGGAC	2 cut(s)	308, 378
FatI	CATG	1 cut(s)	464
FokI	GGATG	1 cut(s)	264
GsaI	CCCAGC	1 cut(s)	51
HaeIII	GGCC	3 cut(s)	192, 351, 408
HapII	CCGG	1 cut(s)	282
Hin1II	CATG	1 cut(s)	468
HinfI	GANTC	3 cut(s)	224, 452, 499
HpaII	CCGG	1 cut(s)	282
Hpy188I	TCNGA	2 cut(s)	61, 498
Hpy188III	TCNNGA	3 cut(s)	80, 128, 200
HpyAV	CCTTC	2 cut(s)	84, 421
HpyCH4III	ACNGT	1 cut(s)	322
HpyCH4IV	ACGT	2 cut(s)	493, 522
HpyF10VI	GCNNNNNNNGC	3 cut(s)	303, 369, 414
HpyF3I	CTNAG	2 cut(s)	66, 420
HpySE526I	ACGT	2 cut(s)	493, 522
Hsp92II	CATG	1 cut(s)	468
Kzo9I	GATC	4 cut(s)	106, 124, 196, 228
LguI	GCTCTTC	1 cut(s)	370
LmnI	GCTCC	1 cut(s)	268
MaeII	ACGT	2 cut(s)	493, 522
MaeIII	GTNAC	1 cut(s)	338
MalI	GATC	4 cut(s)	108, 126, 198, 230
MboI	GATC	4 cut(s)	106, 124, 196, 228
MlsI	TGGCCA	1 cut(s)	351
MluCI	AATT	4 cut(s)	300, 357, 374, 479
MluNI	TGGCCA	1 cut(s)	351
MlyI	GAGTC	1 cut(s)	508
MnlI	CCTC	1 cut(s)	35
Mox20I	TGGCCA	1 cut(s)	351
MscI	TGGCCA	1 cut(s)	351
MseI	TTAA	3 cut(s)	263, 317, 510
Msp20I	TGGCCA	1 cut(s)	351
MspI	CCGG	1 cut(s)	282
MspR9I	CCNGG	2 cut(s)	273, 282
MvaI	CCWGG	1 cut(s)	273
MwoI	GCNNNNNNNGC	3 cut(s)	303, 369, 414
NciI	CCSGG	1 cut(s)	282
NdeII	GATC	4 cut(s)	106, 124, 196, 228
NlaIII	CATG	1 cut(s)	468
NlaIV	GGNNCC	3 cut(s)	46, 270, 409
NmuCI	GTSAC	1 cut(s)	338
PciSI	GCTCTTC	1 cut(s)	370
PfeI	GAWTC	2 cut(s)	224, 452
PfoI	TCCNGGA	1 cut(s)	280
PleI	GAGTC	1 cut(s)	507
PpsI	GAGTC	1 cut(s)	507
PpuMI	RGGWCCY	1 cut(s)	44
Psp1406I	AACGTT	1 cut(s)	522
Psp5II	RGGWCCY	1 cut(s)	44
Psp6I	CCWGG	1 cut(s)	271
PspFI	CCCAGC	1 cut(s)	47
PspGI	CCWGG	1 cut(s)	271
PspN4I	GGNNCC	3 cut(s)	46, 270, 409
PspPI	GGNCC	2 cut(s)	44, 407
PspPPI	RGGWCCY	1 cut(s)	44
RsaI	GTAC	2 cut(s)	460, 492
RsaNI	GTAC	2 cut(s)	459, 491
SapI	GCTCTTC	1 cut(s)	370
SaqAI	TTAA	3 cut(s)	263, 317, 510
Sau3AI	GATC	4 cut(s)	106, 124, 196, 228
Sau96I	GGNCC	2 cut(s)	44, 407
SchI	GAGTC	1 cut(s)	508
ScrFI	CCNGG	2 cut(s)	273, 282
SinI	GGWCC	1 cut(s)	44
Sse9I	AATT	4 cut(s)	300, 357, 374, 479
StyD4I	CCNGG	2 cut(s)	271, 280
TaaI	ACNGT	1 cut(s)	322
TaiI	ACGT	2 cut(s)	496, 525
TaqI	TCGA	1 cut(s)	227
TasI	AATT	4 cut(s)	300, 357, 374, 479
TatI	WGTACW	1 cut(s)	458
TfiI	GAWTC	2 cut(s)	224, 452
Tru1I	TTAA	3 cut(s)	263, 317, 510
Tru9I	TTAA	3 cut(s)	263, 317, 510
TscAI	CASTG	1 cut(s)	341
TseFI	GTSAC	1 cut(s)	338
Tsp45I	GTSAC	1 cut(s)	338
TspDTI	ATGAA	3 cut(s)	17, 45, 324
TspRI	CASTG	1 cut(s)	341
VpaK11BI	GGWCC	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.