E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 435 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 356 |
| AcsI | RAATTY | 1 cut(s) | 236 |
| AcuI | CTGAAG | 1 cut(s) | 246 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 274, 324 |
| AgsI | TTSAA | 1 cut(s) | 272 |
| AjnI | CCWGG | 1 cut(s) | 351 |
| AluBI | AGCT | 2 cut(s) | 224, 293 |
| AluI | AGCT | 2 cut(s) | 224, 293 |
| ApeKI | GCWGC | 1 cut(s) | 48 |
| ApoI | RAATTY | 1 cut(s) | 236 |
| AseI | ATTAAT | 1 cut(s) | 426 |
| AspS9I | GGNCC | 1 cut(s) | 261 |
| AsuHPI | GGTGA | 2 cut(s) | 242, 331 |
| AvaII | GGWCC | 1 cut(s) | 261 |
| AxyI | CCTNAGG | 1 cut(s) | 103 |
| BbvI | GCAGC | 1 cut(s) | 60 |
| BccI | CCATC | 3 cut(s) | 26, 401, 436 |
| BciT130I | CCWGG | 1 cut(s) | 353 |
| BfaI | CTAG | 1 cut(s) | 476 |
| BisI | GCNGC | 1 cut(s) | 49 |
| BlsI | GCNGC | 1 cut(s) | 50 |
| Bme1390I | CCNGG | 1 cut(s) | 353 |
| Bme18I | GGWCC | 1 cut(s) | 261 |
| BmgT120I | GGNCC | 1 cut(s) | 261 |
| BmrFI | CCNGG | 1 cut(s) | 353 |
| BmsI | GCATC | 2 cut(s) | 422, 480 |
| BpuEI | CTTGAG | 1 cut(s) | 279 |
| BsaAI | YACGTR | 1 cut(s) | 20 |
| BsaJI | CCNNGG | 2 cut(s) | 285, 318 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 274, 324 |
| Bse118I | RCCGGY | 1 cut(s) | 253 |
| Bse21I | CCTNAGG | 1 cut(s) | 103 |
| BseBI | CCWGG | 1 cut(s) | 353 |
| BseDI | CCNNGG | 2 cut(s) | 285, 318 |
| BseGI | GGATG | 4 cut(s) | 139, 361, 393, 471 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 274, 324 |
| BseRI | GAGGAG | 3 cut(s) | 129, 132, 135 |
| BseXI | GCAGC | 1 cut(s) | 60 |
| BsiSI | CCGG | 1 cut(s) | 254 |
| BslFI | GGGAC | 1 cut(s) | 354 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 274, 324 |
| BsmFI | GGGAC | 1 cut(s) | 354 |
| Bsp19I | CCATGG | 1 cut(s) | 318 |
| BsrFI | RCCGGY | 1 cut(s) | 253 |
| BssAI | RCCGGY | 1 cut(s) | 253 |
| BssECI | CCNNGG | 2 cut(s) | 285, 318 |
| BssT1I | CCWWGG | 2 cut(s) | 285, 318 |
| Bst2UI | CCWGG | 1 cut(s) | 353 |
| Bst4CI | ACNGT | 1 cut(s) | 465 |
| Bst6I | CTCTTC | 2 cut(s) | 56, 168 |
| BstBAI | YACGTR | 1 cut(s) | 20 |
| BstC8I | GCNNGC | 1 cut(s) | 255 |
| BstDEI | CTNAG | 1 cut(s) | 103 |
| BstDSI | CCRYGG | 1 cut(s) | 318 |
| BstF5I | GGATG | 4 cut(s) | 139, 361, 393, 471 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 98, 290 |
| BstNI | CCWGG | 1 cut(s) | 353 |
| BstSCI | CCNGG | 1 cut(s) | 351 |
| BstSNI | TACGTA | 1 cut(s) | 20 |
| BstV1I | GCAGC | 1 cut(s) | 60 |
| Bsu36I | CCTNAGG | 1 cut(s) | 103 |
| BtgI | CCRYGG | 1 cut(s) | 318 |
| BtsCI | GGATG | 4 cut(s) | 139, 361, 393, 471 |
| Cac8I | GCNNGC | 1 cut(s) | 255 |
| Cfr10I | RCCGGY | 1 cut(s) | 253 |
| Cfr13I | GGNCC | 1 cut(s) | 261 |
| CviAII | CATG | 1 cut(s) | 319 |
| CviJI | RGCY | 4 cut(s) | 51, 224, 253, 293 |
| CviKI_1 | RGCY | 4 cut(s) | 51, 224, 253, 293 |
| DdeI | CTNAG | 1 cut(s) | 103 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 356 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 356 |
| Eam1104I | CTCTTC | 2 cut(s) | 56, 168 |
| EarI | CTCTTC | 2 cut(s) | 56, 168 |
| Eco105I | TACGTA | 1 cut(s) | 20 |
| Eco130I | CCWWGG | 2 cut(s) | 285, 318 |
| Eco47I | GGWCC | 1 cut(s) | 261 |
| Eco57I | CTGAAG | 1 cut(s) | 246 |
| Eco81I | CCTNAGG | 1 cut(s) | 103 |
| EcoRI | GAATTC | 1 cut(s) | 236 |
| EcoRII | CCWGG | 1 cut(s) | 351 |
| EcoT14I | CCWWGG | 2 cut(s) | 285, 318 |
| ErhI | CCWWGG | 2 cut(s) | 285, 318 |
| FaeI | CATG | 1 cut(s) | 322 |
| FaiI | YATR | 5 cut(s) | 320, 381, 420, 422, 435 |
| FaqI | GGGAC | 1 cut(s) | 354 |
| FatI | CATG | 1 cut(s) | 318 |
| FauNDI | CATATG | 1 cut(s) | 420 |
| Fnu4HI | GCNGC | 1 cut(s) | 49 |
| FokI | GGATG | 4 cut(s) | 146, 368, 380, 458 |
| Fsp4HI | GCNGC | 1 cut(s) | 49 |
| FspBI | CTAG | 1 cut(s) | 476 |
| GluI | GCNGC | 1 cut(s) | 49 |
| HapII | CCGG | 1 cut(s) | 254 |
| Hin1II | CATG | 1 cut(s) | 322 |
| HinfI | GANTC | 3 cut(s) | 9, 191, 383 |
| HpaII | CCGG | 1 cut(s) | 254 |
| HphI | GGTGA | 2 cut(s) | 242, 331 |
| Hpy188I | TCNGA | 3 cut(s) | 84, 157, 196 |
| Hpy188III | TCNNGA | 1 cut(s) | 296 |
| HpyAV | CCTTC | 2 cut(s) | 89, 221 |
| HpyCH4III | ACNGT | 1 cut(s) | 465 |
| HpyCH4IV | ACGT | 2 cut(s) | 19, 408 |
| HpyCH4V | TGCA | 1 cut(s) | 413 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 98, 290 |
| HpyF3I | CTNAG | 1 cut(s) | 103 |
| HpySE526I | ACGT | 2 cut(s) | 19, 408 |
| Hsp92II | CATG | 1 cut(s) | 322 |
| KroI | GCCGGC | 1 cut(s) | 253 |
| KroNI | GCCGGC | 1 cut(s) | 255 |
| LmnI | GCTCC | 1 cut(s) | 468 |
| LpnPI | CCDG | 4 cut(s) | 116, 267, 338, 365 |
| Lsp1109I | GCAGC | 1 cut(s) | 60 |
| LweI | GCATC | 2 cut(s) | 422, 480 |
| MaeI | CTAG | 1 cut(s) | 476 |
| MaeII | ACGT | 2 cut(s) | 19, 408 |
| MaeIII | GTNAC | 1 cut(s) | 126 |
| MluCI | AATT | 2 cut(s) | 236, 272 |
| MnlI | CCTC | 8 cut(s) | 57, 107, 110, 113, 116, 133, 169, 252 |
| MroNI | GCCGGC | 1 cut(s) | 253 |
| MseI | TTAA | 2 cut(s) | 426, 489 |
| MspI | CCGG | 1 cut(s) | 254 |
| MspR9I | CCNGG | 1 cut(s) | 353 |
| MvaI | CCWGG | 1 cut(s) | 353 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 98, 290 |
| NaeI | GCCGGC | 1 cut(s) | 255 |
| NcoI | CCATGG | 1 cut(s) | 318 |
| NdeI | CATATG | 1 cut(s) | 420 |
| NgoMIV | GCCGGC | 1 cut(s) | 253 |
| NlaIII | CATG | 1 cut(s) | 322 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 246 |
| PdiI | GCCGGC | 1 cut(s) | 255 |
| PfeI | GAWTC | 3 cut(s) | 9, 191, 383 |
| PkrI | GCNGC | 1 cut(s) | 50 |
| Ppu21I | YACGTR | 1 cut(s) | 20 |
| PshBI | ATTAAT | 1 cut(s) | 426 |
| PsiI | TTATAA | 1 cut(s) | 435 |
| Psp6I | CCWGG | 1 cut(s) | 351 |
| PspGI | CCWGG | 1 cut(s) | 351 |
| PspPI | GGNCC | 1 cut(s) | 261 |
| SaqAI | TTAA | 2 cut(s) | 426, 489 |
| SatI | GCNGC | 1 cut(s) | 49 |
| Sau96I | GGNCC | 1 cut(s) | 261 |
| ScrFI | CCNGG | 1 cut(s) | 353 |
| SfaNI | GCATC | 2 cut(s) | 422, 480 |
| SinI | GGWCC | 1 cut(s) | 261 |
| SmlI | CTYRAG | 1 cut(s) | 294 |
| SmoI | CTYRAG | 1 cut(s) | 294 |
| SnaBI | TACGTA | 1 cut(s) | 20 |
| Sse9I | AATT | 2 cut(s) | 236, 272 |
| SspMI | CTAG | 1 cut(s) | 476 |
| StyD4I | CCNGG | 1 cut(s) | 351 |
| StyI | CCWWGG | 2 cut(s) | 285, 318 |
| TaaI | ACNGT | 1 cut(s) | 465 |
| TaiI | ACGT | 2 cut(s) | 22, 411 |
| TaqII | GACCGA | 1 cut(s) | 362 |
| TasI | AATT | 2 cut(s) | 236, 272 |
| TfiI | GAWTC | 3 cut(s) | 9, 191, 383 |
| Tru1I | TTAA | 2 cut(s) | 426, 489 |
| Tru9I | TTAA | 2 cut(s) | 426, 489 |
| TseI | GCWGC | 1 cut(s) | 48 |
| TspDTI | ATGAA | 3 cut(s) | 42, 249, 396 |
| VpaK11BI | GGWCC | 1 cut(s) | 261 |
| VspI | ATTAAT | 1 cut(s) | 426 |
| XapI | RAATTY | 1 cut(s) | 236 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 271 |
| XspI | CTAG | 1 cut(s) | 476 |