Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000829.1

Orthogroup ID

OG0000395

Physical Location & Seq

Genomic Coordinates Forward (+)

85561 .. 87243

Gene Structure 1683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000829.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

atgacttcaactagcaaagaccatgaaaaggcatgcatgcattctccttgtgcaagcccacattcaggttgcaactttgtctcttcagctaggagcttgtataaacacttcaagagtaatcatgtaagatctgcaaaacgattcgtgtacaacagcaggttttccgttagaataataaagaacatccacatctttcttgttcttcaagaaaagaatgaaggtacgttatttacctttgagaatcactttgttgaatgtgcagggaatgtgttgagggttacttgtattcaaccccggttcatgaaaggtgctccctttgaacttgttgctgaaaaagacgaaggaaattctctcaagttggacgctttcacaaaaagcagtccaaaccccgttaatgatgcccctccaagtagttcttacttttgtcctccaacttacgggattccatgtgatttttttgattcatgtgatcggctcaagatcgacctctgcataagtaagccttatgctgtaagacctgcaattgcatcatatcgaagacctctgcataagcataggcccaaaacaaagggaaaccctagcactaggcccaaaagggctcaaagcccaattgaacatgctaaggccacccaaccccagaacgacggattaccagtccacctccgtttgacgacgccggccgaggcagtcttccaccatcgcccgcctccatcttcgtcgctcccaattgcagccagctctactctggcacagatcggtggcgccattgccagcccgacaccgccatcatcgtcaatgtccccatccgccaacagcccccaaccaccggcaaagcatgaacacccgaagaagatcgccgcccgacgctccactgtgcagcccatcgaacaacactggtcattggttctgtacctgtccaaccatcctcgatccagagtgacccggatccatcatatccgccatgagaaaatcccgcaacgcaagcgcaccaccgcccccacttttgagaagctgactatggggatcccagcattcctcaatctcccagcgactagacaagagggaaattccaactcctctagcccaatttgtagatccgccgccataaggccacgaccttcacctacctctcagagagagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

380

Amino Acids

42.21

Weight (kDa)

10.11

Isoelectric Point (pI)

72.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66610 AT1G66610 AT1G66620 AT1G66630 AT1G66650 AT1G66660 AT1G66660 AT5G37870 AT5G37890 AT5G37900 AT5G37910 AT5G37930 AT5G62800 AT5G62800
fragaria_vesca	FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_2g03850 FvH4_2g04470 FvH4_2g04471
malus_domestica	MD09G1260200.v1.1 MD09G1260400.v1.1 MD10G1106400.v1.1
prunus_persica	Prupe.3G152000_v2.0.a1 Prupe.3G152100_v2.0.a1 Prupe.3G152100_v2.0.a1 Prupe.3G152100_v2.0.a1 Prupe.8G145400_v2.0.a1 Prupe.8G145500_v2.0.a1
pyrus_communis	pycom09g17480 pycom09g17490 pycom10g09160
rosa_chinensis	RchiOBHm_Chr2g0111691 RchiOBHm_Chr3g0448681 RchiOBHm_Chr3g0493571 RchiOBHm_Chr6g0252861 RchiOBHm_Chr6g0252871 RchiOBHm_Chr6g0253841 RchiOBHm_Chr6g0253921 RchiOBHm_Chr6g0253941
rosa_laevigata	RLG00000007595 RLG00000014953 RLG00000014955 RLG00000014957 RLG00000014958 RLG00000015058 RLG00000017917 RLG00000022703
rosa_multiflora	Rmu_sc0000829.1_g000012 Rmu_sc0000829.1_g000015 Rmu_sc0000829.1_g000016 Rmu_sc0000927.1_g000006 Rmu_sc0001716.1_g000004 Rmu_sc0003921.1_g000007
rosa_roxburghii	Rroxscaffold_4G00307570 Rroxscaffold_6G00391470 Rroxscaffold_6G00426970 Rroxscaffold_7G00211390 Rroxscaffold_7G00211420 Rroxscaffold_7G00211430 Rroxscaffold_7G00212350 Rroxscaffold_7G00212370
rosa_rugosa	Rorug02G0175400 Rorug02G0615300 Rorug03G0262600 Rorug03G0262700 Rorug05G0539200 Rorug05G0539400 Rorug05G0548300 Rorug05G0548400 Rorug05G0548500 Rorug05G0548600
rosa_samantha	Rh2BG240600 Rh3AG014100 Rh3AG311400 Rh3BG013900 Rh3BG347300 Rh3CG345400 Rh3DG347600 Rh6AG055200 Rh6AG063900 Rh6AG064600 Rh6AG064800 Rh6BG049400 Rh6BG049500 Rh6BG057700 Rh6BG058000 Rh6CG048200 Rh6CG048300 Rh6CG057600 Rh6CG057900 Rh6DG043800 Rh6DG043900
rosa_wichuraiana	Rw2G017640 Rw6G005000 Rw6G005670 Rw6G005710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	147, 526
AccB1I	GGYRCC	1 cut(s)	761
AciI	CCGC	9 cut(s)	704, 782, 807, 858, 958, 974, 993, 1098, 1101
AclWI	GGATC	6 cut(s)	924, 940, 953, 1018, 1031, 1089
AcoI	YGGCCR	1 cut(s)	678
AcsI	RAATTY	2 cut(s)	346, 1066
AcuI	CTGAAG	1 cut(s)	69
AcyI	GRCGYC	2 cut(s)	674, 762
AfaI	GTAC	3 cut(s)	149, 223, 911
AfiI	CCNNNNNNNGG	5 cut(s)	28, 65, 437, 826, 1107
AgsI	TTSAA	7 cut(s)	9, 112, 206, 254, 290, 320, 614
AluBI	AGCT	4 cut(s)	89, 96, 738, 1012
AluI	AGCT	4 cut(s)	89, 96, 738, 1012
Alw21I	GWGCWC	1 cut(s)	313
Alw26I	GTCTC	1 cut(s)	85
AlwI	GGATC	6 cut(s)	924, 940, 953, 1018, 1031, 1089
AoxI	GGCC	5 cut(s)	557, 587, 624, 678, 1109
ApeKI	GCWGC	2 cut(s)	731, 877
ApoI	RAATTY	2 cut(s)	346, 1066
AspLEI	GCGC	2 cut(s)	764, 987
AspS9I	GGNCC	2 cut(s)	558, 588
AsuC2I	CCSGG	2 cut(s)	295, 943
AsuHPI	GGTGA	1 cut(s)	1113
BamHI	GGATCC	2 cut(s)	945, 1023
BanI	GGYRCC	1 cut(s)	761
BanII	GRGCYC	1 cut(s)	601
BarI	GAAGNNNNNNTAC	2 cut(s)	92, 124
BbsI	GAAGAC	2 cut(s)	544, 682
Bbv12I	GWGCWC	1 cut(s)	313
BbvI	GCAGC	2 cut(s)	743, 889
BccI	CCATC	7 cut(s)	705, 718, 793, 811, 890, 930, 957
BcnI	CCSGG	2 cut(s)	295, 943
BcoDI	GTCTC	1 cut(s)	85
BfaI	CTAG	6 cut(s)	12, 90, 579, 585, 1053, 1080
BfoI	RGCGCY	1 cut(s)	765
BfuAI	ACCTGC	2 cut(s)	147, 526
BglII	AGATCT	1 cut(s)	128
BisI	GCNGC	4 cut(s)	732, 858, 878, 1101
BlsI	GCNGC	4 cut(s)	733, 859, 879, 1102
Bme1390I	CCNGG	2 cut(s)	295, 943
BmgT120I	GGNCC	2 cut(s)	558, 588
BmiI	GGNNCC	3 cut(s)	763, 947, 1025
BmrFI	CCNGG	2 cut(s)	295, 943
BmsI	GCATC	2 cut(s)	388, 536
BpiI	GAAGAC	2 cut(s)	544, 682
Bpu10I	CCTNAGC	1 cut(s)	621
BpuEI	CTTGAG	2 cut(s)	338, 461
BpuMI	CCSGG	2 cut(s)	295, 943
BsaHI	GRCGYC	2 cut(s)	674, 762
BsaJI	CCNNGG	2 cut(s)	293, 681
Bsc4I	CCNNNNNNNGG	5 cut(s)	28, 65, 437, 826, 1107
Bse118I	RCCGGY	2 cut(s)	676, 826
Bse1I	ACTGG	2 cut(s)	653, 899
Bse3DI	GCAATG	1 cut(s)	765
BseDI	CCNNGG	2 cut(s)	293, 681
BseGI	GGATG	3 cut(s)	183, 803, 922
BseLI	CCNNNNNNNGG	5 cut(s)	28, 65, 437, 826, 1107
BseMI	GCAATG	1 cut(s)	765
BseNI	ACTGG	2 cut(s)	653, 899
BseRI	GAGGAG	1 cut(s)	1066
BseX3I	CGGCCG	1 cut(s)	678
BseXI	GCAGC	2 cut(s)	743, 889
BseYI	CCCAGC	2 cut(s)	1027, 1045
BsgI	GTGCAG	2 cut(s)	279, 896
Bsh1285I	CGRYCG	1 cut(s)	681
BshFI	GGCC	5 cut(s)	559, 589, 626, 680, 1111
BshNI	GGYRCC	1 cut(s)	761
BsiEI	CGRYCG	1 cut(s)	681
BsiHKAI	GWGCWC	1 cut(s)	313
BsiSI	CCGG	4 cut(s)	295, 677, 827, 943
BslFI	GGGAC	1 cut(s)	784
BslI	CCNNNNNNNGG	5 cut(s)	28, 65, 437, 826, 1107
BsmAI	GTCTC	1 cut(s)	85
BsmFI	GGGAC	1 cut(s)	784
BsmI	GAATGC	2 cut(s)	40, 1031
BsnI	GGCC	5 cut(s)	559, 589, 626, 680, 1111
Bsp1286I	GDGCHC	2 cut(s)	313, 601
Bsp1407I	TGTACA	1 cut(s)	147
Bsp143I	GATC	9 cut(s)	128, 469, 480, 753, 852, 929, 945, 1023, 1094
BspACI	CCGC	9 cut(s)	704, 782, 807, 858, 958, 974, 993, 1098, 1101
BspANI	GGCC	5 cut(s)	559, 589, 626, 680, 1111
BspHI	TCATGA	1 cut(s)	300
BspLI	GGNNCC	3 cut(s)	763, 947, 1025
BspMI	ACCTGC	2 cut(s)	147, 526
BspPI	GGATC	6 cut(s)	924, 940, 953, 1018, 1031, 1089
BspT107I	GGYRCC	1 cut(s)	761
BsrDI	GCAATG	1 cut(s)	765
BsrFI	RCCGGY	2 cut(s)	676, 826
BsrGI	TGTACA	1 cut(s)	147
BsrI	ACTGG	2 cut(s)	653, 899
BssAI	RCCGGY	2 cut(s)	676, 826
BssECI	CCNNGG	2 cut(s)	293, 681
BssMI	GATC	9 cut(s)	128, 469, 480, 753, 852, 929, 945, 1023, 1094
BssNI	GRCGYC	2 cut(s)	674, 762
Bst4CI	ACNGT	1 cut(s)	874
Bst6I	CTCTTC	1 cut(s)	88
BstACI	GRCGYC	2 cut(s)	674, 762
BstAUI	TGTACA	1 cut(s)	147
BstC8I	GCNNGC	8 cut(s)	34, 38, 55, 678, 704, 736, 772, 983
BstDEI	CTNAG	2 cut(s)	621, 1131
BstF5I	GGATG	3 cut(s)	183, 803, 922
BstH2I	RGCGCY	1 cut(s)	765
BstHHI	GCGC	2 cut(s)	764, 987
BstKTI	GATC	9 cut(s)	131, 472, 483, 756, 855, 932, 948, 1026, 1097
BstMAI	GTCTC	1 cut(s)	85
BstMBI	GATC	9 cut(s)	128, 469, 480, 753, 852, 929, 945, 1023, 1094
BstMCI	CGRYCG	1 cut(s)	681
BstMWI	GCNNNNNNNGC	1 cut(s)	982
BstNSI	RCATGY	3 cut(s)	36, 40, 620
BstSCI	CCNGG	2 cut(s)	293, 941
BstV1I	GCAGC	2 cut(s)	743, 889
BstV2I	GAAGAC	2 cut(s)	544, 682
BstX2I	RGATCY	4 cut(s)	128, 945, 1023, 1094
BstYI	RGATCY	4 cut(s)	128, 945, 1023, 1094
BstZI	CGGCCG	1 cut(s)	678
BsuRI	GGCC	5 cut(s)	559, 589, 626, 680, 1111
BtgZI	GCGATG	1 cut(s)	683
BtsCI	GGATG	3 cut(s)	183, 803, 922
BtsIMutI	CAGTG	2 cut(s)	870, 892
BveI	ACCTGC	2 cut(s)	147, 526
Cac8I	GCNNGC	8 cut(s)	34, 38, 55, 678, 704, 736, 772, 983
CciI	TCATGA	1 cut(s)	300
CfoI	GCGC	2 cut(s)	764, 987
Cfr10I	RCCGGY	2 cut(s)	676, 826
Cfr13I	GGNCC	2 cut(s)	558, 588
CseI	GACGC	3 cut(s)	371, 682, 873
Csp6I	GTAC	3 cut(s)	148, 222, 910
CviQI	GTAC	3 cut(s)	148, 222, 910
DdeI	CTNAG	2 cut(s)	621, 1131
DinI	GGCGCC	1 cut(s)	763
DpnI	GATC	9 cut(s)	130, 471, 482, 755, 854, 931, 947, 1025, 1096
DpnII	GATC	9 cut(s)	128, 469, 480, 753, 852, 929, 945, 1023, 1094
EaeI	YGGCCR	1 cut(s)	678
EagI	CGGCCG	1 cut(s)	678
Eam1104I	CTCTTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	88
EciI	GGCGGA	3 cut(s)	796, 947, 1087
EclXI	CGGCCG	1 cut(s)	678
Eco24I	GRGCYC	1 cut(s)	601
Eco52I	CGGCCG	1 cut(s)	678
Eco57I	CTGAAG	1 cut(s)	69
EcoT22I	ATGCAT	2 cut(s)	38, 42
EcoT38I	GRGCYC	1 cut(s)	601
EgeI	GGCGCC	1 cut(s)	763
EheI	GGCGCC	1 cut(s)	763
FalI	AAGNNNNNCTT	4 cut(s)	400, 432, 487, 519
FaqI	GGGAC	1 cut(s)	784
FauI	CCCGC	2 cut(s)	711, 981
Fnu4HI	GCNGC	4 cut(s)	732, 858, 878, 1101
FokI	GGATG	3 cut(s)	170, 790, 909
FriOI	GRGCYC	1 cut(s)	601
Fsp4HI	GCNGC	4 cut(s)	732, 858, 878, 1101
FspBI	CTAG	6 cut(s)	12, 90, 579, 585, 1053, 1080
GlaI	GCGC	2 cut(s)	763, 986
GluI	GCNGC	4 cut(s)	732, 858, 878, 1101
GsaI	CCCAGC	2 cut(s)	1031, 1049
HaeII	RGCGCY	1 cut(s)	765
HaeIII	GGCC	5 cut(s)	559, 589, 626, 680, 1111
HapII	CCGG	4 cut(s)	295, 677, 827, 943
HgaI	GACGC	3 cut(s)	371, 682, 873
HhaI	GCGC	2 cut(s)	764, 987
Hin1I	GRCGYC	2 cut(s)	674, 762
Hin6I	GCGC	2 cut(s)	762, 985
HinP1I	GCGC	2 cut(s)	762, 985
HinfI	GANTC	4 cut(s)	141, 241, 442, 461
HpaII	CCGG	4 cut(s)	295, 677, 827, 943
HphI	GGTGA	1 cut(s)	1113
Hpy166II	GTNNAC	2 cut(s)	148, 658
Hpy188I	TCNGA	1 cut(s)	1134
Hpy188III	TCNNGA	5 cut(s)	112, 206, 301, 478, 933
Hpy8I	GTNNAC	2 cut(s)	148, 658
Hpy99I	CGWCG	4 cut(s)	647, 676, 721, 867
HpyAV	CCTTC	3 cut(s)	212, 335, 1128
HpyCH4III	ACNGT	1 cut(s)	874
HpyCH4IV	ACGT	1 cut(s)	224
HpyF10VI	GCNNNNNNNGC	1 cut(s)	982
HpyF3I	CTNAG	2 cut(s)	621, 1131
HpySE526I	ACGT	1 cut(s)	224
Hsp92I	GRCGYC	2 cut(s)	674, 762
HspAI	GCGC	2 cut(s)	762, 985
KasI	GGCGCC	1 cut(s)	761
KroI	GCCGGC	1 cut(s)	676
KroNI	GCCGGC	1 cut(s)	678
Kzo9I	GATC	9 cut(s)	128, 469, 480, 753, 852, 929, 945, 1023, 1094
LmnI	GCTCC	4 cut(s)	93, 316, 726, 872
Lsp1109I	GCAGC	2 cut(s)	743, 889
LweI	GCATC	2 cut(s)	388, 536
MaeI	CTAG	6 cut(s)	12, 90, 579, 585, 1053, 1080
MaeII	ACGT	1 cut(s)	224
MaeIII	GTNAC	2 cut(s)	277, 937
MalI	GATC	9 cut(s)	130, 471, 482, 755, 854, 931, 947, 1025, 1096
MboI	GATC	9 cut(s)	128, 469, 480, 753, 852, 929, 945, 1023, 1094
MboII	GAAGA	7 cut(s)	75, 194, 549, 682, 705, 859, 862
MfeI	CAATTG	3 cut(s)	522, 609, 726
MflI	RGATCY	4 cut(s)	128, 945, 1023, 1094
MhlI	GDGCHC	2 cut(s)	313, 601
MluCI	AATT	6 cut(s)	346, 522, 609, 726, 1066, 1086
Mly113I	GGCGCC	1 cut(s)	762
MmeI	TCCRAC	4 cut(s)	339, 455, 942, 1095
Mph1103I	ATGCAT	2 cut(s)	38, 42
MroNI	GCCGGC	1 cut(s)	676
MseI	TTAA	1 cut(s)	393
MspI	CCGG	4 cut(s)	295, 677, 827, 943
MspR9I	CCNGG	2 cut(s)	295, 943
MunI	CAATTG	3 cut(s)	522, 609, 726
Mva1269I	GAATGC	2 cut(s)	40, 1031
MwoI	GCNNNNNNNGC	1 cut(s)	982
NaeI	GCCGGC	1 cut(s)	678
NarI	GGCGCC	1 cut(s)	762
NciI	CCSGG	2 cut(s)	295, 943
NdeII	GATC	9 cut(s)	128, 469, 480, 753, 852, 929, 945, 1023, 1094
NgoMIV	GCCGGC	1 cut(s)	676
NlaIV	GGNNCC	3 cut(s)	763, 947, 1025
NmeAIII	GCCGAG	1 cut(s)	706
NmuCI	GTSAC	1 cut(s)	937
NsiI	ATGCAT	2 cut(s)	38, 42
NspI	RCATGY	3 cut(s)	36, 40, 620
PaeI	GCATGC	2 cut(s)	36, 40
PagI	TCATGA	1 cut(s)	300
PctI	GAATGC	2 cut(s)	40, 1031
PdiI	GCCGGC	1 cut(s)	678
PfeI	GAWTC	4 cut(s)	141, 241, 442, 461
PkrI	GCNGC	4 cut(s)	733, 859, 879, 1102
PluTI	GGCGCC	1 cut(s)	765
PspFI	CCCAGC	2 cut(s)	1027, 1045
PspN4I	GGNNCC	3 cut(s)	763, 947, 1025
PspPI	GGNCC	2 cut(s)	558, 588
PsuI	RGATCY	4 cut(s)	128, 945, 1023, 1094
RsaI	GTAC	3 cut(s)	149, 223, 911
RsaNI	GTAC	3 cut(s)	148, 222, 910
SaqAI	TTAA	1 cut(s)	393
SatI	GCNGC	4 cut(s)	732, 858, 878, 1101
Sau3AI	GATC	9 cut(s)	128, 469, 480, 753, 852, 929, 945, 1023, 1094
Sau96I	GGNCC	2 cut(s)	558, 588
ScrFI	CCNGG	2 cut(s)	295, 943
SduI	GDGCHC	2 cut(s)	313, 601
SfaNI	GCATC	2 cut(s)	388, 536
SfoI	GGCGCC	1 cut(s)	763
SmlI	CTYRAG	2 cut(s)	353, 476
SmoI	CTYRAG	2 cut(s)	353, 476
SphI	GCATGC	2 cut(s)	36, 40
Sse9I	AATT	6 cut(s)	346, 522, 609, 726, 1066, 1086
SsiI	CCGC	9 cut(s)	704, 782, 807, 858, 958, 974, 993, 1098, 1101
SspDI	GGCGCC	1 cut(s)	761
SspMI	CTAG	6 cut(s)	12, 90, 579, 585, 1053, 1080
StyD4I	CCNGG	2 cut(s)	293, 941
TaaI	ACNGT	1 cut(s)	874
TaiI	ACGT	1 cut(s)	227
TaqI	TCGA	4 cut(s)	483, 535, 885, 928
TasI	AATT	6 cut(s)	346, 522, 609, 726, 1066, 1086
TatI	WGTACW	1 cut(s)	147
TauI	GCSGC	2 cut(s)	860, 1103
TfiI	GAWTC	4 cut(s)	141, 241, 442, 461
Tru1I	TTAA	1 cut(s)	393
Tru9I	TTAA	1 cut(s)	393
TscAI	CASTG	2 cut(s)	877, 899
TseFI	GTSAC	1 cut(s)	937
TseI	GCWGC	2 cut(s)	731, 877
Tsp45I	GTSAC	1 cut(s)	937
TspDTI	ATGAA	6 cut(s)	39, 231, 289, 317, 453, 852
TspGWI	ACGGA	3 cut(s)	154, 653, 660
TspRI	CASTG	2 cut(s)	877, 899
XapI	RAATTY	2 cut(s)	346, 1066
XceI	RCATGY	3 cut(s)	36, 40, 620
XcmI	CCANNNNNNNNNTGG	1 cut(s)	742
XspI	CTAG	6 cut(s)	12, 90, 579, 585, 1053, 1080
Zsp2I	ATGCAT	2 cut(s)	38, 42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.