Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000395

Physical Location & Seq

Genomic Coordinates Forward (+)

9542312 .. 9548596

Gene Structure 6285 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG064800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGCTGGGAGTCAGAGCGAGAGAGGGGAATGGCGAGAGATACTCTGAATCTCTGATTCGATCAGATTCAGATGATGAGTTTATTGAATTCCTCATCAGAAAACACAGGGTACCTCGTACATTTCCTTCTCGAAATTTTACATCCCTCATTATAGGGGAACAGATATCTGACGAAGCAGGAGGACATGCACAGAGTCAAGAAGCGGAAGGAGAACTAGAACATCATCAAAGTGAAGAGGAAGTAGGAGACCAACAAAGTGAAGAAGAAGATGATGATGACATGAATGTAGACGAAGAACCCAATAATCGACCATCTAATGCGGAAGACCAAGAGGGTCGTAGTTCGACTTCAGCTAGCAGGGAAGGCTCTAATATTATGATAACTTTAACTGACCCAGGACTGTTAGATTGCCCAATTTGCTGTGAACCCTTGACCATCCCTGTCTTCCAGTGTGATCAGAATGGGCATACAGGTTGTTCCTTGTGCTGCACCAAAATTAGTAACAAATGCCCCTCTTGTTCCTGCCCCATTGGCTCTAATCGTTTCCGAGCCATCGAGAAAGTTGTGGAATCAAGTACATGTCCTTGCCGAAATATCAAGTATGGCTGCAATATTCCAGTGACTTACAACAAGAAGAATGAACATGAAAAGACGTTCAGCCGTATTCAACCCAGCTTCATGGAGGATTTCAACTATGATCTTCTTGTTACTGACAACGAAAGTTGTCTGAAATTTTGCTTGAAAGTATCAATTAGAAAGTTTCTGAATAAGGCTAGGCGTCTCCGACCTTCTCGGGGTGACCTAGGGTTTTTCGAAACTCAGTTTCGACAAGGCGGCGACACTCTTCCCTTAGGCAAGGCGGCGATCGTGGTACGGCAGGGTACGGCGGCGCGGGGCAGGTACTCGAGCATTGATCTTGTTTTTTGCGGCGAGAAGCATCCGTTCGGGGGCCTCTTCGATCATGCCTCTGGTTTTCGATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

327

Amino Acids

36.62

Weight (kDa)

5.2

Isoelectric Point (pI)

57.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sina_RING	PF21362	137 - 173	1.3e-06	E3 ubiquitin-protein ligase sina/sinah, RING finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66610 AT1G66610 AT1G66620 AT1G66630 AT1G66650 AT1G66660 AT1G66660 AT5G37870 AT5G37890 AT5G37900 AT5G37910 AT5G37930 AT5G62800 AT5G62800
fragaria_vesca	FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_2g03850 FvH4_2g04470 FvH4_2g04471
malus_domestica	MD09G1260200.v1.1 MD09G1260400.v1.1 MD10G1106400.v1.1
prunus_persica	Prupe.3G152000_v2.0.a1 Prupe.3G152100_v2.0.a1 Prupe.3G152100_v2.0.a1 Prupe.3G152100_v2.0.a1 Prupe.8G145400_v2.0.a1 Prupe.8G145500_v2.0.a1
pyrus_communis	pycom09g17480 pycom09g17490 pycom10g09160
rosa_chinensis	RchiOBHm_Chr2g0111691 RchiOBHm_Chr3g0448681 RchiOBHm_Chr3g0493571 RchiOBHm_Chr6g0252861 RchiOBHm_Chr6g0252871 RchiOBHm_Chr6g0253841 RchiOBHm_Chr6g0253921 RchiOBHm_Chr6g0253941
rosa_laevigata	RLG00000007595 RLG00000014953 RLG00000014955 RLG00000014957 RLG00000014958 RLG00000015058 RLG00000017917 RLG00000022703
rosa_multiflora	Rmu_sc0000829.1_g000012 Rmu_sc0000829.1_g000015 Rmu_sc0000829.1_g000016 Rmu_sc0000927.1_g000006 Rmu_sc0001716.1_g000004 Rmu_sc0003921.1_g000007
rosa_roxburghii	Rroxscaffold_4G00307570 Rroxscaffold_6G00391470 Rroxscaffold_6G00426970 Rroxscaffold_7G00211390 Rroxscaffold_7G00211420 Rroxscaffold_7G00211430 Rroxscaffold_7G00212350 Rroxscaffold_7G00212370
rosa_rugosa	Rorug02G0175400 Rorug02G0615300 Rorug03G0262600 Rorug03G0262700 Rorug05G0539200 Rorug05G0539400 Rorug05G0548300 Rorug05G0548400 Rorug05G0548500 Rorug05G0548600
rosa_samantha	Rh2BG240600 Rh3AG014100 Rh3AG311400 Rh3BG013900 Rh3BG347300 Rh3CG345400 Rh3DG347600 Rh6AG055200 Rh6AG063900 Rh6AG064600 Rh6AG064800 Rh6BG049400 Rh6BG049500 Rh6BG057700 Rh6BG058000 Rh6CG048200 Rh6CG048300 Rh6CG057600 Rh6CG057900 Rh6DG043800 Rh6DG043900
rosa_wichuraiana	Rw2G017640 Rw6G005000 Rw6G005670 Rw6G005710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	888
Acc65I	GGTACC	1 cut(s)	109
AccB1I	GGYRCC	1 cut(s)	109
AccI	GTMKAC	1 cut(s)	288
AccII	CGCG	1 cut(s)	892
AciI	CCGC	7 cut(s)	203, 320, 834, 860, 887, 892, 927
AcsI	RAATTY	3 cut(s)	86, 133, 731
AcuI	CTGAAG	1 cut(s)	333
AcyI	GRCGYC	1 cut(s)	778
AfaI	GTAC	6 cut(s)	111, 118, 577, 873, 883, 902
AfiI	CCNNNNNNNGG	2 cut(s)	794, 947
AflIII	ACRYGT	1 cut(s)	578
AgsI	TTSAA	4 cut(s)	86, 668, 691, 742
AjnI	CCWGG	1 cut(s)	394
AluBI	AGCT	2 cut(s)	353, 675
AluI	AGCT	2 cut(s)	353, 675
Alw26I	GTCTC	2 cut(s)	240, 785
Ama87I	CYCGRG	2 cut(s)	792, 904
AoxI	GGCC	1 cut(s)	949
ApeKI	GCWGC	2 cut(s)	486, 606
ApoI	RAATTY	3 cut(s)	86, 133, 731
Asp718I	GGTACC	1 cut(s)	109
AspA2I	CCTAGG	1 cut(s)	802
AspLEI	GCGC	1 cut(s)	892
AspS9I	GGNCC	1 cut(s)	949
AsuHPI	GGTGA	1 cut(s)	809
AsuII	TTCGAA	1 cut(s)	813
AsuNHI	GCTAGC	1 cut(s)	353
AvaI	CYCGRG	2 cut(s)	792, 904
AvrII	CCTAGG	1 cut(s)	802
AxyI	CCTNAGG	1 cut(s)	850
BanI	GGYRCC	1 cut(s)	109
BarI	GAAGNNNNNNTAC	4 cut(s)	109, 141, 331, 363
BbsI	GAAGAC	2 cut(s)	330, 436
BbvI	GCAGC	2 cut(s)	473, 593
BccI	CCATC	3 cut(s)	319, 443, 560
BceAI	ACGGC	3 cut(s)	645, 890, 900
BciT130I	CCWGG	1 cut(s)	396
BclI	TGATCA	1 cut(s)	454
BcoDI	GTCTC	2 cut(s)	240, 785
BfaI	CTAG	4 cut(s)	215, 354, 774, 803
BfuAI	ACCTGC	1 cut(s)	888
BglI	GCCNNNNNGGC	1 cut(s)	531
BisI	GCNGC	6 cut(s)	487, 607, 835, 861, 888, 928
BlnI	CCTAGG	1 cut(s)	802
BlsI	GCNGC	6 cut(s)	488, 608, 836, 862, 889, 929
Bme1390I	CCNGG	1 cut(s)	396
BmeT110I	CYCGRG	2 cut(s)	792, 904
BmgT120I	GGNCC	1 cut(s)	949
BmiI	GGNNCC	2 cut(s)	111, 950
BmrFI	CCNGG	1 cut(s)	396
BmsI	GCATC	1 cut(s)	946
BmtI	GCTAGC	1 cut(s)	357
BpiI	GAAGAC	2 cut(s)	330, 436
BplI	GAGNNNNNCTC	2 cut(s)	26, 58
Bpu14I	TTCGAA	1 cut(s)	813
BsaHI	GRCGYC	1 cut(s)	778
BsaI	GGTCTC	1 cut(s)	240
BsaJI	CCNNGG	2 cut(s)	394, 802
Bsc4I	CCNNNNNNNGG	2 cut(s)	794, 947
Bse1I	ACTGG	2 cut(s)	448, 617
Bse21I	CCTNAGG	1 cut(s)	850
BseBI	CCWGG	1 cut(s)	396
BseDI	CCNNGG	2 cut(s)	394, 802
BseGI	GGATG	3 cut(s)	140, 435, 937
BseLI	CCNNNNNNNGG	2 cut(s)	794, 947
BseMII	CTCAG	1 cut(s)	833
BseNI	ACTGG	2 cut(s)	448, 617
BseXI	GCAGC	2 cut(s)	473, 593
BseYI	CCCAGC	2 cut(s)	4, 671
BsgI	GTGCAG	1 cut(s)	472
Bsh1236I	CGCG	1 cut(s)	892
Bsh1285I	CGRYCG	1 cut(s)	867
BshFI	GGCC	1 cut(s)	951
BshNI	GGYRCC	1 cut(s)	109
BsiEI	CGRYCG	1 cut(s)	867
BsiHKCI	CYCGRG	2 cut(s)	792, 904
BslI	CCNNNNNNNGG	2 cut(s)	794, 947
BsmAI	GTCTC	2 cut(s)	240, 785
BsmBI	CGTCTC	1 cut(s)	785
BsnI	GGCC	1 cut(s)	951
Bso31I	GGTCTC	1 cut(s)	240
BsoBI	CYCGRG	2 cut(s)	792, 904
Bsp119I	TTCGAA	1 cut(s)	813
Bsp143I	GATC	6 cut(s)	59, 454, 697, 864, 913, 958
BspACI	CCGC	7 cut(s)	203, 320, 834, 860, 887, 892, 927
BspANI	GGCC	1 cut(s)	951
BspCNI	CTCAG	1 cut(s)	832
BspFNI	CGCG	1 cut(s)	892
BspLI	GGNNCC	2 cut(s)	111, 950
BspMI	ACCTGC	1 cut(s)	888
BspOI	GCTAGC	1 cut(s)	357
BspT104I	TTCGAA	1 cut(s)	813
BspT107I	GGYRCC	1 cut(s)	109
BspTNI	GGTCTC	1 cut(s)	240
BsrI	ACTGG	2 cut(s)	448, 617
BssECI	CCNNGG	2 cut(s)	394, 802
BssMI	GATC	6 cut(s)	59, 454, 697, 864, 913, 958
BssNI	GRCGYC	1 cut(s)	778
BssT1I	CCWWGG	1 cut(s)	802
Bst2UI	CCWGG	1 cut(s)	396
Bst4CI	ACNGT	1 cut(s)	402
Bst6I	CTCTTC	3 cut(s)	228, 849, 959
BstACI	GRCGYC	1 cut(s)	778
BstBI	TTCGAA	1 cut(s)	813
BstC8I	GCNNGC	1 cut(s)	355
BstDEI	CTNAG	2 cut(s)	819, 850
BstEII	GGTNACC	1 cut(s)	797
BstF5I	GGATG	3 cut(s)	140, 435, 937
BstFNI	CGCG	1 cut(s)	892
BstHHI	GCGC	1 cut(s)	892
BstKTI	GATC	6 cut(s)	62, 457, 700, 867, 916, 961
BstMAI	GTCTC	2 cut(s)	240, 785
BstMBI	GATC	6 cut(s)	59, 454, 697, 864, 913, 958
BstMCI	CGRYCG	1 cut(s)	867
BstMWI	GCNNNNNNNGC	3 cut(s)	363, 417, 531
BstNI	CCWGG	1 cut(s)	396
BstNSI	RCATGY	2 cut(s)	188, 582
BstPI	GGTNACC	1 cut(s)	797
BstSCI	CCNGG	1 cut(s)	394
BstUI	CGCG	1 cut(s)	892
BstV1I	GCAGC	2 cut(s)	473, 593
BstV2I	GAAGAC	2 cut(s)	330, 436
BstXI	CCANNNNNNTGG	1 cut(s)	679
Bsu36I	CCTNAGG	1 cut(s)	850
BsuRI	GGCC	1 cut(s)	951
BtsCI	GGATG	3 cut(s)	140, 435, 937
BtsIMutI	CAGTG	2 cut(s)	455, 624
BveI	ACCTGC	1 cut(s)	888
Cac8I	GCNNGC	1 cut(s)	355
CfoI	GCGC	1 cut(s)	892
Cfr13I	GGNCC	1 cut(s)	949
CseI	GACGC	1 cut(s)	767
Csp6I	GTAC	6 cut(s)	110, 117, 576, 872, 882, 901
CviAII	CATG	6 cut(s)	185, 280, 579, 644, 679, 962
CviJI	RGCY	9 cut(s)	353, 366, 534, 551, 606, 660, 675, 773, 951
CviKI_1	RGCY	9 cut(s)	353, 366, 534, 551, 606, 660, 675, 773, 951
CviQI	GTAC	6 cut(s)	110, 117, 576, 872, 882, 901
DdeI	CTNAG	2 cut(s)	819, 850
DpnI	GATC	6 cut(s)	61, 456, 699, 866, 915, 960
DpnII	GATC	6 cut(s)	59, 454, 697, 864, 913, 958
Eam1104I	CTCTTC	3 cut(s)	228, 849, 959
EarI	CTCTTC	3 cut(s)	228, 849, 959
Eco130I	CCWWGG	1 cut(s)	802
Eco31I	GGTCTC	1 cut(s)	240
Eco32I	GATATC	1 cut(s)	165
Eco57I	CTGAAG	1 cut(s)	333
Eco81I	CCTNAGG	1 cut(s)	850
Eco88I	CYCGRG	2 cut(s)	792, 904
Eco91I	GGTNACC	1 cut(s)	797
EcoO109I	RGGNCCY	1 cut(s)	949
EcoO65I	GGTNACC	1 cut(s)	797
EcoRI	GAATTC	1 cut(s)	86
EcoRII	CCWGG	1 cut(s)	394
EcoRV	GATATC	1 cut(s)	165
EcoT14I	CCWWGG	1 cut(s)	802
ErhI	CCWWGG	1 cut(s)	802
Esp3I	CGTCTC	1 cut(s)	785
FaeI	CATG	6 cut(s)	188, 283, 582, 647, 682, 965
FatI	CATG	6 cut(s)	184, 279, 578, 643, 678, 961
FauI	CCCGC	1 cut(s)	885
FbaI	TGATCA	1 cut(s)	454
FblI	GTMKAC	1 cut(s)	288
Fnu4HI	GCNGC	6 cut(s)	487, 607, 835, 861, 888, 928
FokI	GGATG	3 cut(s)	127, 422, 924
Fsp4HI	GCNGC	6 cut(s)	487, 607, 835, 861, 888, 928
FspBI	CTAG	4 cut(s)	215, 354, 774, 803
GlaI	GCGC	1 cut(s)	891
GluI	GCNGC	6 cut(s)	487, 607, 835, 861, 888, 928
GsaI	CCCAGC	2 cut(s)	8, 675
HaeIII	GGCC	1 cut(s)	951
HgaI	GACGC	1 cut(s)	767
HhaI	GCGC	1 cut(s)	892
Hin1I	GRCGYC	1 cut(s)	778
Hin1II	CATG	6 cut(s)	188, 283, 582, 647, 682, 965
Hin6I	GCGC	1 cut(s)	890
HinP1I	GCGC	1 cut(s)	890
HinfI	GANTC	7 cut(s)	9, 47, 55, 65, 193, 569, 978
HphI	GGTGA	1 cut(s)	809
Hpy166II	GTNNAC	2 cut(s)	289, 425
Hpy188III	TCNNGA	3 cut(s)	129, 197, 556
Hpy8I	GTNNAC	2 cut(s)	289, 425
HpyAV	CCTTC	4 cut(s)	135, 200, 356, 798
HpyCH4III	ACNGT	1 cut(s)	402
HpyCH4IV	ACGT	1 cut(s)	653
HpyCH4V	TGCA	3 cut(s)	188, 489, 609
HpyF10VI	GCNNNNNNNGC	3 cut(s)	363, 417, 531
HpyF3I	CTNAG	2 cut(s)	819, 850
HpySE526I	ACGT	1 cut(s)	653
Hsp92I	GRCGYC	1 cut(s)	778
Hsp92II	CATG	6 cut(s)	188, 283, 582, 647, 682, 965
HspAI	GCGC	1 cut(s)	890
KpnI	GGTACC	1 cut(s)	113
Ksp22I	TGATCA	1 cut(s)	454
Kzo9I	GATC	6 cut(s)	59, 454, 697, 864, 913, 958
Lsp1109I	GCAGC	2 cut(s)	473, 593
LweI	GCATC	1 cut(s)	946
MaeI	CTAG	4 cut(s)	215, 354, 774, 803
MaeII	ACGT	1 cut(s)	653
MaeIII	GTNAC	4 cut(s)	500, 619, 706, 797
MalI	GATC	6 cut(s)	61, 456, 699, 866, 915, 960
MboI	GATC	6 cut(s)	59, 454, 697, 864, 913, 958
MluCI	AATT	6 cut(s)	86, 133, 414, 495, 731, 750
MlyI	GAGTC	2 cut(s)	18, 202
MmeI	TCCRAC	1 cut(s)	808
MseI	TTAA	1 cut(s)	386
MslI	CAYNNNNRTG	1 cut(s)	228
MspR9I	CCNGG	1 cut(s)	396
MvaI	CCWGG	1 cut(s)	396
MvnI	CGCG	1 cut(s)	892
MwoI	GCNNNNNNNGC	3 cut(s)	363, 417, 531
NdeII	GATC	6 cut(s)	59, 454, 697, 864, 913, 958
NheI	GCTAGC	1 cut(s)	353
NlaIII	CATG	6 cut(s)	188, 283, 582, 647, 682, 965
NlaIV	GGNNCC	2 cut(s)	111, 950
NmuCI	GTSAC	2 cut(s)	619, 797
NspI	RCATGY	2 cut(s)	188, 582
NspV	TTCGAA	1 cut(s)	813
PaeR7I	CTCGAG	1 cut(s)	904
PciI	ACATGT	1 cut(s)	578
PfeI	GAWTC	5 cut(s)	47, 55, 65, 569, 978
PkrI	GCNGC	6 cut(s)	488, 608, 836, 862, 889, 929
Ple19I	CGATCG	1 cut(s)	867
PleI	GAGTC	2 cut(s)	17, 201
PpsI	GAGTC	2 cut(s)	17, 201
PscI	ACATGT	1 cut(s)	578
Psp6I	CCWGG	1 cut(s)	394
PspEI	GGTNACC	1 cut(s)	797
PspFI	CCCAGC	2 cut(s)	4, 671
PspGI	CCWGG	1 cut(s)	394
PspN4I	GGNNCC	2 cut(s)	111, 950
PspPI	GGNCC	1 cut(s)	949
PspXI	VCTCGAGB	1 cut(s)	904
PvuI	CGATCG	1 cut(s)	867
RsaI	GTAC	6 cut(s)	111, 118, 577, 873, 883, 902
RsaNI	GTAC	6 cut(s)	110, 117, 576, 872, 882, 901
RseI	CAYNNNNRTG	1 cut(s)	228
SaqAI	TTAA	1 cut(s)	386
SatI	GCNGC	6 cut(s)	487, 607, 835, 861, 888, 928
Sau3AI	GATC	6 cut(s)	59, 454, 697, 864, 913, 958
Sau96I	GGNCC	1 cut(s)	949
SchI	GAGTC	2 cut(s)	18, 202
ScrFI	CCNGG	1 cut(s)	396
SetI	ASST	8 cut(s)	115, 355, 475, 656, 677, 790, 804, 902
SfaNI	GCATC	1 cut(s)	946
Sfr274I	CTCGAG	1 cut(s)	904
SfuI	TTCGAA	1 cut(s)	813
SlaI	CTCGAG	1 cut(s)	904
SmiMI	CAYNNNNRTG	1 cut(s)	228
SmlI	CTYRAG	1 cut(s)	904
SmoI	CTYRAG	1 cut(s)	904
Sse9I	AATT	6 cut(s)	86, 133, 414, 495, 731, 750
SsiI	CCGC	7 cut(s)	203, 320, 834, 860, 887, 892, 927
SspI	AATATT	2 cut(s)	373, 613
SspMI	CTAG	4 cut(s)	215, 354, 774, 803
StyD4I	CCNGG	1 cut(s)	394
StyI	CCWWGG	1 cut(s)	802
TaaI	ACNGT	1 cut(s)	402
TaiI	ACGT	1 cut(s)	656
TasI	AATT	6 cut(s)	86, 133, 414, 495, 731, 750
TatI	WGTACW	1 cut(s)	575
TauI	GCSGC	4 cut(s)	837, 863, 890, 930
TfiI	GAWTC	5 cut(s)	47, 55, 65, 569, 978
Tru1I	TTAA	1 cut(s)	386
Tru9I	TTAA	1 cut(s)	386
TscAI	CASTG	2 cut(s)	455, 624
TseFI	GTSAC	2 cut(s)	619, 797
TseI	GCWGC	2 cut(s)	486, 606
Tsp45I	GTSAC	2 cut(s)	619, 797
TspDTI	ATGAA	4 cut(s)	296, 654, 660, 667
TspGWI	ACGGA	1 cut(s)	930
TspRI	CASTG	2 cut(s)	455, 624
XapI	RAATTY	3 cut(s)	86, 133, 731
XceI	RCATGY	2 cut(s)	188, 582
XhoI	CTCGAG	1 cut(s)	904
XmaJI	CCTAGG	1 cut(s)	802
XmiI	GTMKAC	1 cut(s)	288
XspI	CTAG	4 cut(s)	215, 354, 774, 803

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.