Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000395

Physical Location & Seq

Genomic Coordinates Forward (+)

9134358 .. 9135365

Gene Structure 1008 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G005710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGTCGAGATTCTCTGATTTGTCCGTTGAAGATTTGTTAAGAAGACCTCGGTTATTGTTAAATGAAGAAGAATCAGAAGGAGAGGAAGATGGAGAGAGTGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGATGATGATGATGATGATCATGATCATGAAGAGGAGATGGATGAAGACGAAGCACCCAATAACCTACCATCTAATGCTGGAAACCACAAGGGTCATAGTTCGACTTCAGCTAGCAGGGAATGCTCTAATATTATGATAACTTTCACTGACCCAGGACTGCTTGATTGCCCAATTTGCTCTTGCTCCTTGTGCTGCACCAAAATCAATAACAAATGCCCCTTTTGTTCCTGCACCATTGGCTCCAATCGTTGCCGAGCCATCGAGAAGATTGTGGAATCAAGTACAACTCCTTGCAAAAATATCAAGTACGGCTGCAATATTCCTGTGACTTACAACACAAAGAATGAACATGAAAAGACATGTGTATGTTCACCTTGTTCATGCCCTTATTTAGGCTGCAAGTTTGTTTCCTCGGCCAAGGAGTTATACCAACACTTCAGTAATGATCATTTGGATTCGGCAACGGGCTTCCTGTATGACAACTTTGCCCTTGATTACAGTTTCCCAATTACATTGACAAAGAATGACAGCTTTCTTGTTTTTCGAGAAAAGAATAGTGGTACATTATTTATCCTCGACAATCGTATTGAAGTTCTGGGAAATGTTGTGACAGTTAGCTGTATTCAGCCTAGCTTCATGGAGGATTTCAACTATGATCTTCTGGTTTCTAACCAGGAAAGTTCTCTCAAATTTCGGTCTCTGACAAAAAGTACTCCAAGCCTGCAGGTTAATGGCTCTCCTTCAAGAAGTTTTCTGTTAATCCCATGTGAGTTTTTCAACTCTTGTGGTCAGGTCAAGATTGATGTTTCCATACGGCGCAAATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

318

Amino Acids

35.83

Weight (kDa)

4.52

Isoelectric Point (pI)

67.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sina_ZnF	PF21361	132 - 193	1.5e-12	Sina, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66610 AT1G66610 AT1G66620 AT1G66630 AT1G66650 AT1G66660 AT1G66660 AT5G37870 AT5G37890 AT5G37900 AT5G37910 AT5G37930 AT5G62800 AT5G62800
fragaria_vesca	FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_2g03850 FvH4_2g04470 FvH4_2g04471
malus_domestica	MD09G1260200.v1.1 MD09G1260400.v1.1 MD10G1106400.v1.1
prunus_persica	Prupe.3G152000_v2.0.a1 Prupe.3G152100_v2.0.a1 Prupe.3G152100_v2.0.a1 Prupe.3G152100_v2.0.a1 Prupe.8G145400_v2.0.a1 Prupe.8G145500_v2.0.a1
pyrus_communis	pycom09g17480 pycom09g17490 pycom10g09160
rosa_chinensis	RchiOBHm_Chr2g0111691 RchiOBHm_Chr3g0448681 RchiOBHm_Chr3g0493571 RchiOBHm_Chr6g0252861 RchiOBHm_Chr6g0252871 RchiOBHm_Chr6g0253841 RchiOBHm_Chr6g0253921 RchiOBHm_Chr6g0253941
rosa_laevigata	RLG00000007595 RLG00000014953 RLG00000014955 RLG00000014957 RLG00000014958 RLG00000015058 RLG00000017917 RLG00000022703
rosa_multiflora	Rmu_sc0000829.1_g000012 Rmu_sc0000829.1_g000015 Rmu_sc0000829.1_g000016 Rmu_sc0000927.1_g000006 Rmu_sc0001716.1_g000004 Rmu_sc0003921.1_g000007
rosa_roxburghii	Rroxscaffold_4G00307570 Rroxscaffold_6G00391470 Rroxscaffold_6G00426970 Rroxscaffold_7G00211390 Rroxscaffold_7G00211420 Rroxscaffold_7G00211430 Rroxscaffold_7G00212350 Rroxscaffold_7G00212370
rosa_rugosa	Rorug02G0175400 Rorug02G0615300 Rorug03G0262600 Rorug03G0262700 Rorug05G0539200 Rorug05G0539400 Rorug05G0548300 Rorug05G0548400 Rorug05G0548500 Rorug05G0548600
rosa_samantha	Rh2BG240600 Rh3AG014100 Rh3AG311400 Rh3BG013900 Rh3BG347300 Rh3CG345400 Rh3DG347600 Rh6AG055200 Rh6AG063900 Rh6AG064600 Rh6AG064800 Rh6BG049400 Rh6BG049500 Rh6BG057700 Rh6BG058000 Rh6CG048200 Rh6CG048300 Rh6CG057600 Rh6CG057900 Rh6DG043800 Rh6DG043900
rosa_wichuraiana	Rw2G017640 Rw6G005000 Rw6G005670 Rw6G005710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	844
AcoI	YGGCCR	1 cut(s)	543
AcsI	RAATTY	1 cut(s)	818
AcuI	CTGAAG	2 cut(s)	219, 550
AfaI	GTAC	4 cut(s)	412, 437, 691, 841
AfiI	CCNNNNNNNGG	1 cut(s)	521
AflIII	ACRYGT	1 cut(s)	488
AgsI	TTSAA	5 cut(s)	29, 719, 778, 873, 907
AjnI	CCWGG	2 cut(s)	280, 801
AluBI	AGCT	4 cut(s)	239, 660, 747, 762
AluI	AGCT	4 cut(s)	239, 660, 747, 762
Alw26I	GTCTC	1 cut(s)	831
AoxI	GGCC	1 cut(s)	543
ApeKI	GCWGC	3 cut(s)	321, 441, 525
ApoI	RAATTY	1 cut(s)	818
AspLEI	GCGC	1 cut(s)	948
AsuHPI	GGTGA	1 cut(s)	492
AsuNHI	GCTAGC	1 cut(s)	239
BbsI	GAAGAC	2 cut(s)	49, 180
BbvI	GCAGC	3 cut(s)	308, 428, 512
BccI	CCATC	4 cut(s)	83, 160, 205, 395
BceAI	ACGGC	1 cut(s)	454
BciT130I	CCWGG	2 cut(s)	282, 803
BclI	TGATCA	3 cut(s)	145, 151, 574
BcoDI	GTCTC	1 cut(s)	831
BfaI	CTAG	2 cut(s)	240, 759
BfmI	CTRYAG	1 cut(s)	851
BfuAI	ACCTGC	1 cut(s)	844
BisI	GCNGC	3 cut(s)	322, 442, 526
BlsI	GCNGC	3 cut(s)	323, 443, 527
BmcAI	AGTACT	1 cut(s)	841
Bme1390I	CCNGG	2 cut(s)	282, 803
BmiI	GGNNCC	1 cut(s)	370
BmrFI	CCNGG	2 cut(s)	282, 803
BmtI	GCTAGC	1 cut(s)	243
BpiI	GAAGAC	2 cut(s)	49, 180
BsaBI	GATNNNNATC	2 cut(s)	144, 150
BsaI	GGTCTC	1 cut(s)	831
BsaJI	CCNNGG	4 cut(s)	47, 280, 540, 546
Bsc4I	CCNNNNNNNGG	1 cut(s)	521
Bse8I	GATNNNNATC	2 cut(s)	144, 150
BseBI	CCWGG	2 cut(s)	282, 803
BseDI	CCNNGG	4 cut(s)	47, 280, 540, 546
BseGI	GGATG	1 cut(s)	175
BseJI	GATNNNNATC	2 cut(s)	144, 150
BseLI	CCNNNNNNNGG	1 cut(s)	521
BseRI	GAGGAG	1 cut(s)	176
BseXI	GCAGC	3 cut(s)	308, 428, 512
BsgI	GTGCAG	2 cut(s)	307, 343
BshFI	GGCC	1 cut(s)	545
BslI	CCNNNNNNNGG	1 cut(s)	521
BsmAI	GTCTC	1 cut(s)	831
BsmI	GAATGC	1 cut(s)	254
BsnI	GGCC	1 cut(s)	545
Bso31I	GGTCTC	1 cut(s)	831
Bsp143I	GATC	4 cut(s)	145, 151, 574, 784
BspANI	GGCC	1 cut(s)	545
BspHI	TCATGA	2 cut(s)	148, 154
BspLI	GGNNCC	1 cut(s)	370
BspMAI	CTGCAG	1 cut(s)	855
BspMI	ACCTGC	1 cut(s)	844
BspOI	GCTAGC	1 cut(s)	243
BspTNI	GGTCTC	1 cut(s)	831
BssECI	CCNNGG	4 cut(s)	47, 280, 540, 546
BssMI	GATC	4 cut(s)	145, 151, 574, 784
BssT1I	CCWWGG	1 cut(s)	546
Bst2UI	CCWGG	2 cut(s)	282, 803
Bst4CI	ACNGT	2 cut(s)	629, 742
Bst6I	CTCTTC	1 cut(s)	153
BstAPI	GCANNNNNTGC	1 cut(s)	249
BstC8I	GCNNGC	2 cut(s)	241, 851
BstENI	CCTNNNNNAGG	1 cut(s)	519
BstF5I	GGATG	1 cut(s)	175
BstHHI	GCGC	1 cut(s)	948
BstKTI	GATC	4 cut(s)	148, 154, 577, 787
BstMAI	GTCTC	1 cut(s)	831
BstMBI	GATC	4 cut(s)	145, 151, 574, 784
BstMWI	GCNNNNNNNGC	4 cut(s)	249, 303, 318, 366
BstNI	CCWGG	2 cut(s)	282, 803
BstNSI	RCATGY	1 cut(s)	492
BstSCI	CCNGG	2 cut(s)	280, 801
BstSFI	CTRYAG	1 cut(s)	851
BstV1I	GCAGC	3 cut(s)	308, 428, 512
BstV2I	GAAGAC	2 cut(s)	49, 180
BsuRI	GGCC	1 cut(s)	545
BtsCI	GGATG	1 cut(s)	175
BtsIMutI	CAGTG	1 cut(s)	273
BveI	ACCTGC	1 cut(s)	844
Cac8I	GCNNGC	2 cut(s)	241, 851
CciI	TCATGA	2 cut(s)	148, 154
CfoI	GCGC	1 cut(s)	948
Csp6I	GTAC	4 cut(s)	411, 436, 690, 840
CspCI	CAANNNNNGTGG	2 cut(s)	895, 930
CviAII	CATG	7 cut(s)	149, 155, 479, 489, 510, 766, 894
CviQI	GTAC	4 cut(s)	411, 436, 690, 840
DpnI	GATC	4 cut(s)	147, 153, 576, 786
DpnII	GATC	4 cut(s)	145, 151, 574, 784
EaeI	YGGCCR	1 cut(s)	543
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
Eco130I	CCWWGG	1 cut(s)	546
Eco31I	GGTCTC	1 cut(s)	831
Eco57I	CTGAAG	2 cut(s)	219, 550
EcoNI	CCTNNNNNAGG	1 cut(s)	519
EcoRII	CCWGG	2 cut(s)	280, 801
EcoT14I	CCWWGG	1 cut(s)	546
ErhI	CCWWGG	1 cut(s)	546
FaeI	CATG	7 cut(s)	152, 158, 482, 492, 513, 769, 897
FatI	CATG	7 cut(s)	148, 154, 478, 488, 509, 765, 893
FbaI	TGATCA	3 cut(s)	145, 151, 574
Fnu4HI	GCNGC	3 cut(s)	322, 442, 526
FokI	GGATG	1 cut(s)	182
Fsp4HI	GCNGC	3 cut(s)	322, 442, 526
FspBI	CTAG	2 cut(s)	240, 759
GlaI	GCGC	1 cut(s)	947
GluI	GCNGC	3 cut(s)	322, 442, 526
HaeIII	GGCC	1 cut(s)	545
HhaI	GCGC	1 cut(s)	948
Hin1II	CATG	7 cut(s)	152, 158, 482, 492, 513, 769, 897
Hin6I	GCGC	1 cut(s)	946
HinP1I	GCGC	1 cut(s)	946
HinfI	GANTC	4 cut(s)	9, 71, 404, 584
HphI	GGTGA	1 cut(s)	492
Hpy166II	GTNNAC	1 cut(s)	500
Hpy188I	TCNGA	3 cut(s)	16, 76, 831
Hpy188III	TCNNGA	7 cut(s)	6, 149, 155, 391, 674, 873, 925
Hpy8I	GTNNAC	1 cut(s)	500
HpyAV	CCTTC	2 cut(s)	71, 879
HpyCH4III	ACNGT	2 cut(s)	629, 742
HpyCH4V	TGCA	6 cut(s)	324, 360, 423, 444, 528, 853
HpyF10VI	GCNNNNNNNGC	4 cut(s)	249, 303, 318, 366
Hsp92II	CATG	7 cut(s)	152, 158, 482, 492, 513, 769, 897
HspAI	GCGC	1 cut(s)	946
Ksp22I	TGATCA	3 cut(s)	145, 151, 574
Kzo9I	GATC	4 cut(s)	145, 151, 574, 784
LmnI	GCTCC	2 cut(s)	317, 374
Lsp1109I	GCAGC	3 cut(s)	308, 428, 512
MaeI	CTAG	2 cut(s)	240, 759
MaeIII	GTNAC	2 cut(s)	454, 736
MalI	GATC	4 cut(s)	147, 153, 576, 786
MboI	GATC	4 cut(s)	145, 151, 574, 784
MluCI	AATT	3 cut(s)	300, 636, 818
MnlI	CCTC	6 cut(s)	57, 76, 154, 550, 713, 763
MseI	TTAA	4 cut(s)	38, 59, 858, 887
MslI	CAYNNNNRTG	2 cut(s)	153, 493
MspR9I	CCNGG	2 cut(s)	282, 803
Mva1269I	GAATGC	1 cut(s)	254
MvaI	CCWGG	2 cut(s)	282, 803
MwoI	GCNNNNNNNGC	4 cut(s)	249, 303, 318, 366
NdeII	GATC	4 cut(s)	145, 151, 574, 784
NheI	GCTAGC	1 cut(s)	239
NlaIII	CATG	7 cut(s)	152, 158, 482, 492, 513, 769, 897
NlaIV	GGNNCC	1 cut(s)	370
NmeAIII	GCCGAG	2 cut(s)	407, 521
NmuCI	GTSAC	2 cut(s)	454, 736
NspI	RCATGY	1 cut(s)	492
PagI	TCATGA	2 cut(s)	148, 154
PciI	ACATGT	1 cut(s)	488
PctI	GAATGC	1 cut(s)	254
PfeI	GAWTC	4 cut(s)	9, 71, 404, 584
PkrI	GCNGC	3 cut(s)	323, 443, 527
PscI	ACATGT	1 cut(s)	488
Psp6I	CCWGG	2 cut(s)	280, 801
PspGI	CCWGG	2 cut(s)	280, 801
PspN4I	GGNNCC	1 cut(s)	370
PstI	CTGCAG	1 cut(s)	855
RsaI	GTAC	4 cut(s)	412, 437, 691, 841
RsaNI	GTAC	4 cut(s)	411, 436, 690, 840
RseI	CAYNNNNRTG	2 cut(s)	153, 493
SaqAI	TTAA	4 cut(s)	38, 59, 858, 887
SatI	GCNGC	3 cut(s)	322, 442, 526
Sau3AI	GATC	4 cut(s)	145, 151, 574, 784
SbfI	CCTGCAGG	1 cut(s)	855
ScaI	AGTACT	1 cut(s)	841
ScrFI	CCNGG	2 cut(s)	282, 803
SdaI	CCTGCAGG	1 cut(s)	855
SetI	ASST	9 cut(s)	49, 195, 241, 505, 662, 749, 764, 858, 924
SfcI	CTRYAG	1 cut(s)	851
SmiMI	CAYNNNNRTG	2 cut(s)	153, 493
Sse8387I	CCTGCAGG	1 cut(s)	855
Sse9I	AATT	3 cut(s)	300, 636, 818
SspI	AATATT	2 cut(s)	259, 448
SspMI	CTAG	2 cut(s)	240, 759
StyD4I	CCNGG	2 cut(s)	280, 801
StyI	CCWWGG	1 cut(s)	546
TaaI	ACNGT	2 cut(s)	629, 742
TaqI	TCGA	5 cut(s)	5, 230, 390, 673, 705
TaqII	GACCGA	1 cut(s)	813
TasI	AATT	3 cut(s)	300, 636, 818
TatI	WGTACW	2 cut(s)	410, 839
TfiI	GAWTC	4 cut(s)	9, 71, 404, 584
Tru1I	TTAA	4 cut(s)	38, 59, 858, 887
Tru9I	TTAA	4 cut(s)	38, 59, 858, 887
TscAI	CASTG	1 cut(s)	280
TseFI	GTSAC	2 cut(s)	454, 736
TseI	GCWGC	3 cut(s)	321, 441, 525
Tsp45I	GTSAC	2 cut(s)	454, 736
TspDTI	ATGAA	7 cut(s)	78, 171, 186, 489, 495, 498, 754
TspGWI	ACGGA	1 cut(s)	13
TspRI	CASTG	1 cut(s)	280
XagI	CCTNNNNNAGG	1 cut(s)	519
XapI	RAATTY	1 cut(s)	818
XceI	RCATGY	1 cut(s)	492
XspI	CTAG	2 cut(s)	240, 759
ZrmI	AGTACT	1 cut(s)	841

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.