Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000395

Physical Location & Seq

Genomic Coordinates Reverse (-)

15093903 .. 15094802

Gene Structure 900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G37900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGTGGGAGCCTTAGAAGCTTTGATATCTCAAGGTCATGGAGGGGAGAGAGTGGCTAAGAGACAACGCTCGGCGACATTGCTAGATCTTGATATCCTCGATTGTCCTATTTGCTGTGAAGGATTGACGTGTCCTATCTTCCAGCCAATGGAGAATATTCTTGAATCGATATTGGTCACATGCCCAAACGACATGTTTGGTTGCACCGAGAGTTTCTTATATGGGAAAAAATCAACTCATGAAGAAGAATGCATTTTCTCTCTATGCTCATGCCCTTCATTGGACTGTGAGTACTCCGGCCGATACGAGGATCTCTATGATCACTATAAACTGACTCACATCTCGAACTCATACTGGACCACTAACTGCTTTAGATCTAGCATTCCATATAAGGCCCCGATGCTTATCAGCGATAAGATACAAATTACAAGGGTATATGAGAAGAAAATATTGTTTGCAGTGCAGTGTTTTAGGGAGTCGTGTGGTGTGTATGTAACCGTAAGCTGCATTGCACCATCTGCTCCAGAAGTTGGACAGTTCTCATATCAAATCTCCTACACTGTGGATGAACACACTATGGTTTACAGATCACCACAAATGAAGAGGGTTCGTAAAGTGAGTTTTGAAACACCTCAAGAGAATTTCATGTTGATACCTCACAATTTATTGCGTAGTGAATTGTTGGATATTAAGCTTTCTATCGTCGAAACGTCGAACCAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

241

Amino Acids

27.48

Weight (kDa)

5.32

Isoelectric Point (pI)

48.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sina_ZnF	PF21361	53 - 113	9.9e-11	Sina, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66610 AT1G66610 AT1G66620 AT1G66630 AT1G66650 AT1G66660 AT1G66660 AT5G37870 AT5G37890 AT5G37900 AT5G37910 AT5G37930 AT5G62800 AT5G62800
fragaria_vesca	FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_2g03850 FvH4_2g04470 FvH4_2g04471
malus_domestica	MD09G1260200.v1.1 MD09G1260400.v1.1 MD10G1106400.v1.1
prunus_persica	Prupe.3G152000_v2.0.a1 Prupe.3G152100_v2.0.a1 Prupe.3G152100_v2.0.a1 Prupe.3G152100_v2.0.a1 Prupe.8G145400_v2.0.a1 Prupe.8G145500_v2.0.a1
pyrus_communis	pycom09g17480 pycom09g17490 pycom10g09160
rosa_chinensis	RchiOBHm_Chr2g0111691 RchiOBHm_Chr3g0448681 RchiOBHm_Chr3g0493571 RchiOBHm_Chr6g0252861 RchiOBHm_Chr6g0252871 RchiOBHm_Chr6g0253841 RchiOBHm_Chr6g0253921 RchiOBHm_Chr6g0253941
rosa_laevigata	RLG00000007595 RLG00000014953 RLG00000014955 RLG00000014957 RLG00000014958 RLG00000015058 RLG00000017917 RLG00000022703
rosa_multiflora	Rmu_sc0000829.1_g000012 Rmu_sc0000829.1_g000015 Rmu_sc0000829.1_g000016 Rmu_sc0000927.1_g000006 Rmu_sc0001716.1_g000004 Rmu_sc0003921.1_g000007
rosa_roxburghii	Rroxscaffold_4G00307570 Rroxscaffold_6G00391470 Rroxscaffold_6G00426970 Rroxscaffold_7G00211390 Rroxscaffold_7G00211420 Rroxscaffold_7G00211430 Rroxscaffold_7G00212350 Rroxscaffold_7G00212370
rosa_rugosa	Rorug02G0175400 Rorug02G0615300 Rorug03G0262600 Rorug03G0262700 Rorug05G0539200 Rorug05G0539400 Rorug05G0548300 Rorug05G0548400 Rorug05G0548500 Rorug05G0548600
rosa_samantha	Rh2BG240600 Rh3AG014100 Rh3AG311400 Rh3BG013900 Rh3BG347300 Rh3CG345400 Rh3DG347600 Rh6AG055200 Rh6AG063900 Rh6AG064600 Rh6AG064800 Rh6BG049400 Rh6BG049500 Rh6BG057700 Rh6BG058000 Rh6CG048200 Rh6CG048300 Rh6CG057600 Rh6CG057900 Rh6DG043800 Rh6DG043900
rosa_wichuraiana	Rw2G017640 Rw6G005000 Rw6G005670 Rw6G005710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	148, 530
AclWI	GGATC	1 cut(s)	318
AcoI	YGGCCR	1 cut(s)	298
AcsI	RAATTY	1 cut(s)	640
AfaI	GTAC	1 cut(s)	293
AfiI	CCNNNNNNNGG	4 cut(s)	148, 280, 307, 530
AflIII	ACRYGT	2 cut(s)	128, 192
AgsI	TTSAA	2 cut(s)	164, 626
AjiI	CACGTC	1 cut(s)	129
AluBI	AGCT	3 cut(s)	20, 504, 694
AluI	AGCT	3 cut(s)	20, 504, 694
Alw26I	GTCTC	1 cut(s)	55
AlwI	GGATC	1 cut(s)	318
AoxI	GGCC	2 cut(s)	298, 393
ApeKI	GCWGC	1 cut(s)	504
ApoI	RAATTY	1 cut(s)	640
AspS9I	GGNCC	2 cut(s)	357, 394
AsuHPI	GGTGA	1 cut(s)	582
AvaII	GGWCC	1 cut(s)	357
BbvI	GCAGC	1 cut(s)	491
BccI	CCATC	1 cut(s)	523
BclI	TGATCA	1 cut(s)	319
BcoDI	GTCTC	1 cut(s)	55
BfaI	CTAG	2 cut(s)	83, 378
BglII	AGATCT	2 cut(s)	85, 374
BisI	GCNGC	1 cut(s)	505
BlsI	GCNGC	1 cut(s)	506
BmcAI	AGTACT	1 cut(s)	293
Bme18I	GGWCC	1 cut(s)	357
BmgBI	CACGTC	1 cut(s)	129
BmgT120I	GGNCC	2 cut(s)	357, 394
BmiI	GGNNCC	2 cut(s)	10, 396
BmsI	GCATC	1 cut(s)	390
BpmI	CTGGAG	1 cut(s)	507
BpuEI	CTTGAG	2 cut(s)	15, 618
Bsa29I	ATCGAT	1 cut(s)	167
BsaBI	GATNNNNATC	1 cut(s)	404
Bsc4I	CCNNNNNNNGG	4 cut(s)	148, 280, 307, 530
Bse1I	ACTGG	1 cut(s)	359
Bse3DI	GCAATG	2 cut(s)	77, 507
Bse8I	GATNNNNATC	1 cut(s)	404
BseCI	ATCGAT	1 cut(s)	167
BseGI	GGATG	1 cut(s)	571
BseJI	GATNNNNATC	1 cut(s)	404
BseLI	CCNNNNNNNGG	4 cut(s)	148, 280, 307, 530
BseMI	GCAATG	2 cut(s)	77, 507
BseNI	ACTGG	1 cut(s)	359
BseX3I	CGGCCG	1 cut(s)	298
BseXI	GCAGC	1 cut(s)	491
BsgI	GTGCAG	1 cut(s)	482
Bsh1285I	CGRYCG	1 cut(s)	301
BshFI	GGCC	2 cut(s)	300, 395
BshVI	ATCGAT	1 cut(s)	167
BsiEI	CGRYCG	1 cut(s)	301
BsiSI	CCGG	1 cut(s)	297
BslI	CCNNNNNNNGG	4 cut(s)	148, 280, 307, 530
BsmAI	GTCTC	1 cut(s)	55
BsmI	GAATGC	2 cut(s)	254, 381
BsnI	GGCC	2 cut(s)	300, 395
Bsp143I	GATC	5 cut(s)	85, 310, 319, 374, 587
BspANI	GGCC	2 cut(s)	300, 395
BspDI	ATCGAT	1 cut(s)	167
BspHI	TCATGA	1 cut(s)	238
BspLI	GGNNCC	2 cut(s)	10, 396
BspPI	GGATC	1 cut(s)	318
BsrDI	GCAATG	2 cut(s)	77, 507
BsrI	ACTGG	1 cut(s)	359
BssMI	GATC	5 cut(s)	85, 310, 319, 374, 587
Bst4CI	ACNGT	4 cut(s)	287, 499, 537, 562
Bst6I	CTCTTC	1 cut(s)	596
BstAPI	GCANNNNNTGC	1 cut(s)	518
BstDEI	CTNAG	2 cut(s)	13, 57
BstF5I	GGATG	1 cut(s)	571
BstKTI	GATC	5 cut(s)	88, 313, 322, 377, 590
BstMAI	GTCTC	1 cut(s)	55
BstMBI	GATC	5 cut(s)	85, 310, 319, 374, 587
BstMCI	CGRYCG	1 cut(s)	301
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 518
BstNSI	RCATGY	2 cut(s)	183, 196
BstV1I	GCAGC	1 cut(s)	491
BstX2I	RGATCY	3 cut(s)	85, 310, 374
BstYI	RGATCY	3 cut(s)	85, 310, 374
BstZI	CGGCCG	1 cut(s)	298
Bsu15I	ATCGAT	1 cut(s)	167
BsuRI	GGCC	2 cut(s)	300, 395
BsuTUI	ATCGAT	1 cut(s)	167
BtrI	CACGTC	1 cut(s)	129
BtsCI	GGATG	1 cut(s)	571
BtsI	GCAGTG	2 cut(s)	465, 470
BtsIMutI	CAGTG	3 cut(s)	465, 470, 558
CciI	TCATGA	1 cut(s)	238
Cfr13I	GGNCC	2 cut(s)	357, 394
ClaI	ATCGAT	1 cut(s)	167
Csp6I	GTAC	1 cut(s)	292
CviAII	CATG	6 cut(s)	38, 180, 193, 239, 270, 646
CviJI	RGCY	8 cut(s)	11, 20, 56, 145, 300, 395, 504, 694
CviKI_1	RGCY	8 cut(s)	11, 20, 56, 145, 300, 395, 504, 694
CviQI	GTAC	1 cut(s)	292
DdeI	CTNAG	2 cut(s)	13, 57
DpnI	GATC	5 cut(s)	87, 312, 321, 376, 589
DpnII	GATC	5 cut(s)	85, 310, 319, 374, 587
EaeI	YGGCCR	1 cut(s)	298
EagI	CGGCCG	1 cut(s)	298
Eam1104I	CTCTTC	1 cut(s)	596
EarI	CTCTTC	1 cut(s)	596
EclXI	CGGCCG	1 cut(s)	298
Eco32I	GATATC	2 cut(s)	27, 94
Eco47I	GGWCC	1 cut(s)	357
Eco52I	CGGCCG	1 cut(s)	298
EcoO109I	RGGNCCY	1 cut(s)	394
EcoRV	GATATC	2 cut(s)	27, 94
EcoT22I	ATGCAT	1 cut(s)	254
FaeI	CATG	6 cut(s)	41, 183, 196, 242, 273, 649
FatI	CATG	6 cut(s)	37, 179, 192, 238, 269, 645
FbaI	TGATCA	1 cut(s)	319
Fnu4HI	GCNGC	1 cut(s)	505
FokI	GGATG	1 cut(s)	578
Fsp4HI	GCNGC	1 cut(s)	505
FspBI	CTAG	2 cut(s)	83, 378
GluI	GCNGC	1 cut(s)	505
GsuI	CTGGAG	1 cut(s)	507
HaeIII	GGCC	2 cut(s)	300, 395
HapII	CCGG	1 cut(s)	297
Hin1II	CATG	6 cut(s)	41, 183, 196, 242, 273, 649
HindIII	AAGCTT	2 cut(s)	18, 692
HinfI	GANTC	3 cut(s)	164, 334, 476
HpaII	CCGG	1 cut(s)	297
HphI	GGTGA	1 cut(s)	582
Hpy166II	GTNNAC	1 cut(s)	583
Hpy188III	TCNNGA	6 cut(s)	89, 161, 239, 343, 524, 635
Hpy8I	GTNNAC	1 cut(s)	583
Hpy99I	CGWCG	2 cut(s)	707, 715
HpyAV	CCTTC	2 cut(s)	113, 285
HpyCH4III	ACNGT	4 cut(s)	287, 499, 537, 562
HpyCH4IV	ACGT	2 cut(s)	128, 710
HpyCH4V	TGCA	6 cut(s)	204, 252, 458, 463, 507, 512
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 518
HpyF3I	CTNAG	2 cut(s)	13, 57
HpySE526I	ACGT	2 cut(s)	128, 710
Hsp92II	CATG	6 cut(s)	41, 183, 196, 242, 273, 649
Ksp22I	TGATCA	1 cut(s)	319
Kzo9I	GATC	5 cut(s)	85, 310, 319, 374, 587
LmnI	GCTCC	2 cut(s)	8, 526
LpnPI	CCDG	4 cut(s)	155, 310, 340, 537
Lsp1109I	GCAGC	1 cut(s)	491
LweI	GCATC	1 cut(s)	390
MaeI	CTAG	2 cut(s)	83, 378
MaeII	ACGT	2 cut(s)	128, 710
MaeIII	GTNAC	2 cut(s)	175, 493
MalI	GATC	5 cut(s)	87, 312, 321, 376, 589
MboI	GATC	5 cut(s)	85, 310, 319, 374, 587
MboII	GAAGA	5 cut(s)	130, 254, 257, 454, 613
MflI	RGATCY	3 cut(s)	85, 310, 374
MluCI	AATT	4 cut(s)	423, 640, 661, 677
MlyI	GAGTC	2 cut(s)	328, 485
MmeI	TCCRAC	2 cut(s)	511, 663
MnlI	CCTC	6 cut(s)	35, 107, 301, 597, 642, 666
Mph1103I	ATGCAT	1 cut(s)	254
MseI	TTAA	1 cut(s)	690
MspI	CCGG	1 cut(s)	297
Mva1269I	GAATGC	2 cut(s)	254, 381
MwoI	GCNNNNNNNGC	2 cut(s)	17, 518
NdeII	GATC	5 cut(s)	85, 310, 319, 374, 587
NlaIII	CATG	6 cut(s)	41, 183, 196, 242, 273, 649
NlaIV	GGNNCC	2 cut(s)	10, 396
NmeAIII	GCCGAG	1 cut(s)	50
NmuCI	GTSAC	1 cut(s)	175
NsiI	ATGCAT	1 cut(s)	254
NspI	RCATGY	2 cut(s)	183, 196
PagI	TCATGA	1 cut(s)	238
PciI	ACATGT	1 cut(s)	192
PctI	GAATGC	2 cut(s)	254, 381
PfeI	GAWTC	1 cut(s)	164
PflMI	CCANNNNNTGG	2 cut(s)	148, 530
PkrI	GCNGC	1 cut(s)	506
PleI	GAGTC	2 cut(s)	328, 484
PpsI	GAGTC	2 cut(s)	328, 484
PscI	ACATGT	1 cut(s)	192
PspN4I	GGNNCC	2 cut(s)	10, 396
PspPI	GGNCC	2 cut(s)	357, 394
PsuI	RGATCY	3 cut(s)	85, 310, 374
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
SaqAI	TTAA	1 cut(s)	690
SatI	GCNGC	1 cut(s)	505
Sau3AI	GATC	5 cut(s)	85, 310, 319, 374, 587
Sau96I	GGNCC	2 cut(s)	357, 394
ScaI	AGTACT	1 cut(s)	293
SchI	GAGTC	2 cut(s)	328, 485
SetI	ASST	8 cut(s)	22, 37, 131, 506, 634, 658, 696, 713
SfaNI	GCATC	1 cut(s)	390
SinI	GGWCC	1 cut(s)	357
SmlI	CTYRAG	2 cut(s)	30, 633
SmoI	CTYRAG	2 cut(s)	30, 633
Sse9I	AATT	4 cut(s)	423, 640, 661, 677
SspI	AATATT	2 cut(s)	157, 450
SspMI	CTAG	2 cut(s)	83, 378
TaaI	ACNGT	4 cut(s)	287, 499, 537, 562
TaiI	ACGT	2 cut(s)	131, 713
TaqI	TCGA	5 cut(s)	99, 167, 344, 705, 713
TasI	AATT	4 cut(s)	423, 640, 661, 677
TatI	WGTACW	1 cut(s)	291
TfiI	GAWTC	1 cut(s)	164
Tru1I	TTAA	1 cut(s)	690
Tru9I	TTAA	1 cut(s)	690
TscAI	CASTG	3 cut(s)	465, 470, 565
TseFI	GTSAC	1 cut(s)	175
TseI	GCWGC	1 cut(s)	504
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	5 cut(s)	255, 267, 582, 614, 634
TspRI	CASTG	3 cut(s)	465, 470, 565
Van91I	CCANNNNNTGG	2 cut(s)	148, 530
VpaK11BI	GGWCC	1 cut(s)	357
XapI	RAATTY	1 cut(s)	640
XceI	RCATGY	2 cut(s)	183, 196
XspI	CTAG	2 cut(s)	83, 378
ZrmI	AGTACT	1 cut(s)	293
Zsp2I	ATGCAT	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.