E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Sina_RING | PF21362 | 93 - 129 | 1.3e-10 | E3 ubiquitin-protein ligase sina/sinah, RING finger |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 137 |
| AccII | CGCG | 2 cut(s) | 172, 189 |
| AciI | CCGC | 1 cut(s) | 187 |
| AcoI | YGGCCR | 1 cut(s) | 417 |
| AcuI | CTGAAG | 1 cut(s) | 382 |
| AfaI | GTAC | 2 cut(s) | 61, 235 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 116, 193 |
| AhlI | ACTAGT | 1 cut(s) | 230 |
| AleI | CACNNNNGTG | 1 cut(s) | 128 |
| AluBI | AGCT | 4 cut(s) | 31, 149, 402, 438 |
| AluI | AGCT | 4 cut(s) | 31, 149, 402, 438 |
| Ama87I | CYCGRG | 1 cut(s) | 83 |
| AoxI | GGCC | 1 cut(s) | 417 |
| AspLEI | GCGC | 4 cut(s) | 103, 172, 174, 191 |
| AsuC2I | CCSGG | 2 cut(s) | 84, 85 |
| AvaI | CYCGRG | 1 cut(s) | 83 |
| BalI | TGGCCA | 1 cut(s) | 419 |
| BcnI | CCSGG | 2 cut(s) | 84, 85 |
| BcuI | ACTAGT | 1 cut(s) | 230 |
| BfaI | CTAG | 6 cut(s) | 20, 32, 146, 206, 231, 439 |
| BmcAI | AGTACT | 2 cut(s) | 61, 235 |
| Bme1390I | CCNGG | 2 cut(s) | 84, 85 |
| BmeT110I | CYCGRG | 1 cut(s) | 83 |
| BmrFI | CCNGG | 2 cut(s) | 84, 85 |
| BpmI | CTGGAG | 1 cut(s) | 388 |
| BpuMI | CCSGG | 2 cut(s) | 84, 85 |
| BsaJI | CCNNGG | 3 cut(s) | 83, 192, 420 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 116, 193 |
| Bse1I | ACTGG | 1 cut(s) | 405 |
| BseDI | CCNNGG | 3 cut(s) | 83, 192, 420 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 116, 193 |
| BseNI | ACTGG | 1 cut(s) | 405 |
| BsePI | GCGCGC | 1 cut(s) | 170 |
| BseRI | GAGGAG | 2 cut(s) | 99, 337 |
| BsgI | GTGCAG | 1 cut(s) | 376 |
| Bsh1236I | CGCG | 2 cut(s) | 172, 189 |
| BshFI | GGCC | 1 cut(s) | 419 |
| BsiHKCI | CYCGRG | 1 cut(s) | 83 |
| BsiSI | CCGG | 1 cut(s) | 84 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 116, 193 |
| BsnI | GGCC | 1 cut(s) | 419 |
| BsoBI | CYCGRG | 1 cut(s) | 83 |
| Bsp19I | CCATGG | 2 cut(s) | 192, 420 |
| BspACI | CCGC | 1 cut(s) | 187 |
| BspANI | GGCC | 1 cut(s) | 419 |
| BspFNI | CGCG | 2 cut(s) | 172, 189 |
| BspQI | GCTCTTC | 1 cut(s) | 33 |
| BsrI | ACTGG | 1 cut(s) | 405 |
| BssECI | CCNNGG | 3 cut(s) | 83, 192, 420 |
| BssHII | GCGCGC | 1 cut(s) | 170 |
| BssT1I | CCWWGG | 2 cut(s) | 192, 420 |
| Bst4CI | ACNGT | 1 cut(s) | 130 |
| Bst6I | CTCTTC | 1 cut(s) | 33 |
| BstC8I | GCNNGC | 3 cut(s) | 105, 172, 391 |
| BstDSI | CCRYGG | 2 cut(s) | 192, 420 |
| BstFNI | CGCG | 2 cut(s) | 172, 189 |
| BstHHI | GCGC | 4 cut(s) | 103, 172, 174, 191 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 113, 180, 351, 399 |
| BstSCI | CCNGG | 2 cut(s) | 82, 83 |
| BstUI | CGCG | 2 cut(s) | 172, 189 |
| BsuRI | GGCC | 1 cut(s) | 419 |
| BtgI | CCRYGG | 2 cut(s) | 192, 420 |
| BtsIMutI | CAGTG | 1 cut(s) | 135 |
| Cac8I | GCNNGC | 3 cut(s) | 105, 172, 391 |
| CfoI | GCGC | 4 cut(s) | 103, 172, 174, 191 |
| Cfr9I | CCCGGG | 1 cut(s) | 83 |
| Csp6I | GTAC | 2 cut(s) | 60, 234 |
| CviAII | CATG | 3 cut(s) | 193, 351, 421 |
| CviJI | RGCY | 7 cut(s) | 31, 43, 149, 402, 419, 430, 438 |
| CviKI_1 | RGCY | 7 cut(s) | 31, 43, 149, 402, 419, 430, 438 |
| CviQI | GTAC | 2 cut(s) | 60, 234 |
| EaeI | YGGCCR | 1 cut(s) | 417 |
| Eam1104I | CTCTTC | 1 cut(s) | 33 |
| EarI | CTCTTC | 1 cut(s) | 33 |
| Eco130I | CCWWGG | 2 cut(s) | 192, 420 |
| Eco57I | CTGAAG | 1 cut(s) | 382 |
| Eco88I | CYCGRG | 1 cut(s) | 83 |
| EcoT14I | CCWWGG | 2 cut(s) | 192, 420 |
| ErhI | CCWWGG | 2 cut(s) | 192, 420 |
| FaeI | CATG | 3 cut(s) | 196, 354, 424 |
| FaiI | YATR | 9 cut(s) | 27, 137, 153, 194, 248, 336, 338, 352, 422 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 49, 81 |
| FatI | CATG | 3 cut(s) | 192, 350, 420 |
| FspBI | CTAG | 6 cut(s) | 20, 32, 146, 206, 231, 439 |
| GlaI | GCGC | 4 cut(s) | 102, 171, 173, 190 |
| GsuI | CTGGAG | 1 cut(s) | 388 |
| HaeIII | GGCC | 1 cut(s) | 419 |
| HapII | CCGG | 1 cut(s) | 84 |
| HhaI | GCGC | 4 cut(s) | 103, 172, 174, 191 |
| Hin1II | CATG | 3 cut(s) | 196, 354, 424 |
| Hin6I | GCGC | 4 cut(s) | 101, 170, 172, 189 |
| HinP1I | GCGC | 4 cut(s) | 101, 170, 172, 189 |
| HincII | GTYRAC | 1 cut(s) | 293 |
| HindII | GTYRAC | 1 cut(s) | 293 |
| HinfI | GANTC | 3 cut(s) | 95, 120, 209 |
| HpaII | CCGG | 1 cut(s) | 84 |
| Hpy166II | GTNNAC | 1 cut(s) | 293 |
| Hpy188III | TCNNGA | 2 cut(s) | 124, 206 |
| Hpy8I | GTNNAC | 1 cut(s) | 293 |
| HpyAV | CCTTC | 4 cut(s) | 82, 193, 390, 406 |
| HpyCH4III | ACNGT | 1 cut(s) | 130 |
| HpyCH4V | TGCA | 3 cut(s) | 16, 239, 393 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 113, 180, 351, 399 |
| Hsp92II | CATG | 3 cut(s) | 196, 354, 424 |
| HspAI | GCGC | 4 cut(s) | 101, 170, 172, 189 |
| LguI | GCTCTTC | 1 cut(s) | 33 |
| LmnI | GCTCC | 3 cut(s) | 112, 350, 407 |
| LpnPI | CCDG | 6 cut(s) | 97, 102, 117, 276, 403, 418 |
| MaeI | CTAG | 6 cut(s) | 20, 32, 146, 206, 231, 439 |
| MaeIII | GTNAC | 1 cut(s) | 320 |
| MboII | GAAGA | 2 cut(s) | 50, 104 |
| MlsI | TGGCCA | 1 cut(s) | 419 |
| MluCI | AATT | 5 cut(s) | 11, 139, 213, 282, 412 |
| MluNI | TGGCCA | 1 cut(s) | 419 |
| MnlI | CCTC | 4 cut(s) | 28, 120, 168, 358 |
| Mox20I | TGGCCA | 1 cut(s) | 419 |
| MscI | TGGCCA | 1 cut(s) | 419 |
| MslI | CAYNNNNRTG | 1 cut(s) | 128 |
| Msp20I | TGGCCA | 1 cut(s) | 419 |
| MspI | CCGG | 1 cut(s) | 84 |
| MspR9I | CCNGG | 2 cut(s) | 84, 85 |
| MvnI | CGCG | 2 cut(s) | 172, 189 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 113, 180, 351, 399 |
| NciI | CCSGG | 2 cut(s) | 84, 85 |
| NcoI | CCATGG | 2 cut(s) | 192, 420 |
| NlaIII | CATG | 3 cut(s) | 196, 354, 424 |
| NmeAIII | GCCGAG | 1 cut(s) | 380 |
| NmuCI | GTSAC | 1 cut(s) | 320 |
| OliI | CACNNNNGTG | 1 cut(s) | 128 |
| PauI | GCGCGC | 1 cut(s) | 170 |
| PciSI | GCTCTTC | 1 cut(s) | 33 |
| PfeI | GAWTC | 3 cut(s) | 95, 120, 209 |
| PsiI | TTATAA | 1 cut(s) | 137 |
| PteI | GCGCGC | 1 cut(s) | 170 |
| RsaI | GTAC | 2 cut(s) | 61, 235 |
| RsaNI | GTAC | 2 cut(s) | 60, 234 |
| RseI | CAYNNNNRTG | 1 cut(s) | 128 |
| SapI | GCTCTTC | 1 cut(s) | 33 |
| ScaI | AGTACT | 2 cut(s) | 61, 235 |
| ScrFI | CCNGG | 2 cut(s) | 84, 85 |
| SetI | ASST | 6 cut(s) | 33, 151, 204, 398, 404, 440 |
| SmaI | CCCGGG | 1 cut(s) | 85 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 128 |
| SpeI | ACTAGT | 1 cut(s) | 230 |
| Sse9I | AATT | 5 cut(s) | 11, 139, 213, 282, 412 |
| SsiI | CCGC | 1 cut(s) | 187 |
| SspMI | CTAG | 6 cut(s) | 20, 32, 146, 206, 231, 439 |
| StyD4I | CCNGG | 2 cut(s) | 82, 83 |
| StyI | CCWWGG | 2 cut(s) | 192, 420 |
| TaaI | ACNGT | 1 cut(s) | 130 |
| TasI | AATT | 5 cut(s) | 11, 139, 213, 282, 412 |
| TatI | WGTACW | 2 cut(s) | 59, 233 |
| TfiI | GAWTC | 3 cut(s) | 95, 120, 209 |
| TscAI | CASTG | 1 cut(s) | 135 |
| TseFI | GTSAC | 1 cut(s) | 320 |
| Tsp45I | GTSAC | 1 cut(s) | 320 |
| TspDTI | ATGAA | 2 cut(s) | 17, 63 |
| TspMI | CCCGGG | 1 cut(s) | 83 |
| TspRI | CASTG | 1 cut(s) | 135 |
| XbaI | TCTAGA | 1 cut(s) | 205 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 412 |
| XmaI | CCCGGG | 1 cut(s) | 83 |
| XspI | CTAG | 6 cut(s) | 20, 32, 146, 206, 231, 439 |
| ZrmI | AGTACT | 2 cut(s) | 61, 235 |