Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000395

Physical Location & Seq

Genomic Coordinates Reverse (-)

59905717 .. 59906682

Gene Structure 966 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014953

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGCGAGAGATACTCTGATTCTGATTCAGATGATGAGTTTATTGAATTCCTCATCAGAAGACACAAGAGTGAAGAGGAAGCAGAAGAAGACCAAGAAAGTGAAGAAGAAGATGATGATGACTGATGACATGAATGTAGACGAAGAACCCAATAATCTACCATCTAATGCGGGAGACCAAGAGGGTCGCAGTTCGACTTCAGCTAGCAAGGAAGGCTCTAATATTATGATCACTTTAACTGACCCAGGACTGCTAGATTGCCCAATTTGCTGTGAACCCTTGACCATCCCTGTCTTCCAGTGTGATCAGAATGGGCATATAGCTTGTTCCTTGTGCTGCACCAAGATCAATAACAAATGTCCCTCTTGTTCCTGCCCCATTGGCTCTAATCGTTGCCGACCCATCGAGAAAGTTGTGGAATCAAGTACATGTCCTTGCCGAAATATCAAGTATGGCTGCAATATCCCAGCGACTTGCAACAAGAAGAATGAACATGAAAAAGACGTTAATGATCACTTGGATTCGGCAACAGGCCTCCTGTATGATAACTTTGACCTCAATTTCAGTTTCCCAATTACATTGAAAAAGAATGACAGCCTTCTTGTTGCTCGAGAAAAGCTTGGTGGTACATTATTTATCCTCCACAATCGTGTTGAAGTTCTGGGAAATGTTGTGACGATCAGCTGTATTCAACCCAGCTTCATGGAGGATTTCAACTATGAACTTCTTGTTACTAACAAGGAAAGTTGTCTCCGACATAAATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

256

Amino Acids

28.52

Weight (kDa)

7.41

Isoelectric Point (pI)

56.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sina_RING	PF21362	87 - 123	2.1e-07	E3 ubiquitin-protein ligase sina/sinah, RING finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66610 AT1G66610 AT1G66620 AT1G66630 AT1G66650 AT1G66660 AT1G66660 AT5G37870 AT5G37890 AT5G37900 AT5G37910 AT5G37930 AT5G62800 AT5G62800
fragaria_vesca	FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_1g29100 FvH4_2g03850 FvH4_2g04470 FvH4_2g04471
malus_domestica	MD09G1260200.v1.1 MD09G1260400.v1.1 MD10G1106400.v1.1
prunus_persica	Prupe.3G152000_v2.0.a1 Prupe.3G152100_v2.0.a1 Prupe.3G152100_v2.0.a1 Prupe.3G152100_v2.0.a1 Prupe.8G145400_v2.0.a1 Prupe.8G145500_v2.0.a1
pyrus_communis	pycom09g17480 pycom09g17490 pycom10g09160
rosa_chinensis	RchiOBHm_Chr2g0111691 RchiOBHm_Chr3g0448681 RchiOBHm_Chr3g0493571 RchiOBHm_Chr6g0252861 RchiOBHm_Chr6g0252871 RchiOBHm_Chr6g0253841 RchiOBHm_Chr6g0253921 RchiOBHm_Chr6g0253941
rosa_laevigata	RLG00000007595 RLG00000014953 RLG00000014955 RLG00000014957 RLG00000014958 RLG00000015058 RLG00000017917 RLG00000022703
rosa_multiflora	Rmu_sc0000829.1_g000012 Rmu_sc0000829.1_g000015 Rmu_sc0000829.1_g000016 Rmu_sc0000927.1_g000006 Rmu_sc0001716.1_g000004 Rmu_sc0003921.1_g000007
rosa_roxburghii	Rroxscaffold_4G00307570 Rroxscaffold_6G00391470 Rroxscaffold_6G00426970 Rroxscaffold_7G00211390 Rroxscaffold_7G00211420 Rroxscaffold_7G00211430 Rroxscaffold_7G00212350 Rroxscaffold_7G00212370
rosa_rugosa	Rorug02G0175400 Rorug02G0615300 Rorug03G0262600 Rorug03G0262700 Rorug05G0539200 Rorug05G0539400 Rorug05G0548300 Rorug05G0548400 Rorug05G0548500 Rorug05G0548600
rosa_samantha	Rh2BG240600 Rh3AG014100 Rh3AG311400 Rh3BG013900 Rh3BG347300 Rh3CG345400 Rh3DG347600 Rh6AG055200 Rh6AG063900 Rh6AG064600 Rh6AG064800 Rh6BG049400 Rh6BG049500 Rh6BG057700 Rh6BG058000 Rh6CG048200 Rh6CG048300 Rh6CG057600 Rh6CG057900 Rh6DG043800 Rh6DG043900
rosa_wichuraiana	Rw2G017640 Rw6G005000 Rw6G005670 Rw6G005710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	138
AciI	CCGC	1 cut(s)	170
AcsI	RAATTY	1 cut(s)	46
AcuI	CTGAAG	1 cut(s)	183
AfaI	GTAC	2 cut(s)	427, 628
AflIII	ACRYGT	1 cut(s)	428
AgsI	TTSAA	5 cut(s)	46, 583, 656, 692, 715
AjnI	CCWGG	1 cut(s)	244
AleI	CACNNNNGTG	2 cut(s)	68, 648
AluBI	AGCT	5 cut(s)	203, 323, 619, 684, 699
AluI	AGCT	5 cut(s)	203, 323, 619, 684, 699
Alw26I	GTCTC	2 cut(s)	168, 755
Ama87I	CYCGRG	1 cut(s)	609
AoxI	GGCC	1 cut(s)	532
ApeKI	GCWGC	2 cut(s)	336, 456
ApoI	RAATTY	1 cut(s)	46
AsuNHI	GCTAGC	1 cut(s)	203
AvaI	CYCGRG	1 cut(s)	609
BbsI	GAAGAC	3 cut(s)	66, 95, 286
BbvI	GCAGC	2 cut(s)	323, 443
BccI	CCATC	3 cut(s)	169, 293, 410
BciT130I	CCWGG	1 cut(s)	246
BclI	TGATCA	3 cut(s)	228, 304, 511
BcoDI	GTCTC	2 cut(s)	168, 755
BfaI	CTAG	2 cut(s)	204, 254
BglI	GCCNNNNNGGC	1 cut(s)	381
BisI	GCNGC	2 cut(s)	337, 457
BlsI	GCNGC	2 cut(s)	338, 458
Bme1390I	CCNGG	1 cut(s)	246
BmeT110I	CYCGRG	1 cut(s)	609
BmrFI	CCNGG	1 cut(s)	246
BmtI	GCTAGC	1 cut(s)	207
BpiI	GAAGAC	3 cut(s)	66, 95, 286
BplI	GAGNNNNNCTC	1 cut(s)	30
BsaI	GGTCTC	1 cut(s)	168
BsaJI	CCNNGG	1 cut(s)	244
Bse1I	ACTGG	1 cut(s)	298
BseBI	CCWGG	1 cut(s)	246
BseDI	CCNNGG	1 cut(s)	244
BseGI	GGATG	1 cut(s)	285
BseNI	ACTGG	1 cut(s)	298
BseXI	GCAGC	2 cut(s)	323, 443
BseYI	CCCAGC	2 cut(s)	466, 695
BsgI	GTGCAG	1 cut(s)	322
BshFI	GGCC	1 cut(s)	534
BsiHKCI	CYCGRG	1 cut(s)	609
BslFI	GGGAC	1 cut(s)	345
BsmAI	GTCTC	2 cut(s)	168, 755
BsmFI	GGGAC	1 cut(s)	345
BsnI	GGCC	1 cut(s)	534
Bso31I	GGTCTC	1 cut(s)	168
BsoBI	CYCGRG	1 cut(s)	609
Bsp143I	GATC	5 cut(s)	228, 304, 345, 511, 678
BspACI	CCGC	1 cut(s)	170
BspANI	GGCC	1 cut(s)	534
BspOI	GCTAGC	1 cut(s)	207
BspTNI	GGTCTC	1 cut(s)	168
BsrI	ACTGG	1 cut(s)	298
BssECI	CCNNGG	1 cut(s)	244
BssMI	GATC	5 cut(s)	228, 304, 345, 511, 678
Bst2UI	CCWGG	1 cut(s)	246
Bst6I	CTCTTC	1 cut(s)	68
BstC8I	GCNNGC	1 cut(s)	205
BstF5I	GGATG	1 cut(s)	285
BstKTI	GATC	5 cut(s)	231, 307, 348, 514, 681
BstMAI	GTCTC	2 cut(s)	168, 755
BstMBI	GATC	5 cut(s)	228, 304, 345, 511, 678
BstMWI	GCNNNNNNNGC	3 cut(s)	213, 267, 381
BstNI	CCWGG	1 cut(s)	246
BstNSI	RCATGY	1 cut(s)	432
BstSCI	CCNGG	1 cut(s)	244
BstV1I	GCAGC	2 cut(s)	323, 443
BstV2I	GAAGAC	3 cut(s)	66, 95, 286
BstXI	CCANNNNNNTGG	1 cut(s)	703
BsuRI	GGCC	1 cut(s)	534
BtsCI	GGATG	1 cut(s)	285
BtsIMutI	CAGTG	1 cut(s)	305
Cac8I	GCNNGC	1 cut(s)	205
Csp6I	GTAC	2 cut(s)	426, 627
CviAII	CATG	4 cut(s)	130, 429, 494, 703
CviQI	GTAC	2 cut(s)	426, 627
DpnI	GATC	5 cut(s)	230, 306, 347, 513, 680
DpnII	GATC	5 cut(s)	228, 304, 345, 511, 678
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Eco147I	AGGCCT	1 cut(s)	534
Eco31I	GGTCTC	1 cut(s)	168
Eco57I	CTGAAG	1 cut(s)	183
Eco88I	CYCGRG	1 cut(s)	609
EcoRI	GAATTC	1 cut(s)	46
EcoRII	CCWGG	1 cut(s)	244
FaeI	CATG	4 cut(s)	133, 432, 497, 706
FaqI	GGGAC	1 cut(s)	345
FatI	CATG	4 cut(s)	129, 428, 493, 702
FauI	CCCGC	1 cut(s)	163
FbaI	TGATCA	3 cut(s)	228, 304, 511
FblI	GTMKAC	1 cut(s)	138
Fnu4HI	GCNGC	2 cut(s)	337, 457
FokI	GGATG	1 cut(s)	272
Fsp4HI	GCNGC	2 cut(s)	337, 457
FspBI	CTAG	2 cut(s)	204, 254
GluI	GCNGC	2 cut(s)	337, 457
GsaI	CCCAGC	2 cut(s)	470, 699
HaeIII	GGCC	1 cut(s)	534
Hin1II	CATG	4 cut(s)	133, 432, 497, 706
HindIII	AAGCTT	1 cut(s)	617
HinfI	GANTC	4 cut(s)	19, 25, 419, 521
Hpy166II	GTNNAC	2 cut(s)	139, 275
Hpy188I	TCNGA	6 cut(s)	18, 24, 30, 58, 309, 755
Hpy188III	TCNNGA	2 cut(s)	406, 611
Hpy8I	GTNNAC	2 cut(s)	139, 275
HpyAV	CCTTC	2 cut(s)	206, 608
HpyCH4IV	ACGT	1 cut(s)	504
HpyCH4V	TGCA	3 cut(s)	339, 459, 477
HpyF10VI	GCNNNNNNNGC	3 cut(s)	213, 267, 381
HpySE526I	ACGT	1 cut(s)	504
Hsp92II	CATG	4 cut(s)	133, 432, 497, 706
Ksp22I	TGATCA	3 cut(s)	228, 304, 511
Kzo9I	GATC	5 cut(s)	228, 304, 345, 511, 678
Lsp1109I	GCAGC	2 cut(s)	323, 443
MaeI	CTAG	2 cut(s)	204, 254
MaeII	ACGT	1 cut(s)	504
MaeIII	GTNAC	2 cut(s)	673, 730
MalI	GATC	5 cut(s)	230, 306, 347, 513, 680
MboI	GATC	5 cut(s)	228, 304, 345, 511, 678
MluCI	AATT	4 cut(s)	46, 264, 559, 573
MnlI	CCTC	8 cut(s)	61, 69, 175, 373, 545, 566, 650, 700
MseI	TTAA	2 cut(s)	236, 507
MslI	CAYNNNNRTG	2 cut(s)	68, 648
MspA1I	CMGCKG	1 cut(s)	684
MspR9I	CCNGG	1 cut(s)	246
MvaI	CCWGG	1 cut(s)	246
MwoI	GCNNNNNNNGC	3 cut(s)	213, 267, 381
NdeII	GATC	5 cut(s)	228, 304, 345, 511, 678
NheI	GCTAGC	1 cut(s)	203
NlaIII	CATG	4 cut(s)	133, 432, 497, 706
NmuCI	GTSAC	1 cut(s)	673
NspI	RCATGY	1 cut(s)	432
OliI	CACNNNNGTG	2 cut(s)	68, 648
PaeR7I	CTCGAG	1 cut(s)	609
PceI	AGGCCT	1 cut(s)	534
PciI	ACATGT	1 cut(s)	428
PfeI	GAWTC	4 cut(s)	19, 25, 419, 521
PkrI	GCNGC	2 cut(s)	338, 458
PscI	ACATGT	1 cut(s)	428
Psp6I	CCWGG	1 cut(s)	244
PspFI	CCCAGC	2 cut(s)	466, 695
PspGI	CCWGG	1 cut(s)	244
PvuII	CAGCTG	1 cut(s)	684
RsaI	GTAC	2 cut(s)	427, 628
RsaNI	GTAC	2 cut(s)	426, 627
RseI	CAYNNNNRTG	2 cut(s)	68, 648
SaqAI	TTAA	2 cut(s)	236, 507
SatI	GCNGC	2 cut(s)	337, 457
Sau3AI	GATC	5 cut(s)	228, 304, 345, 511, 678
ScrFI	CCNGG	1 cut(s)	246
SetI	ASST	7 cut(s)	205, 325, 507, 558, 621, 686, 701
Sfr274I	CTCGAG	1 cut(s)	609
SlaI	CTCGAG	1 cut(s)	609
SmiMI	CAYNNNNRTG	2 cut(s)	68, 648
SmlI	CTYRAG	1 cut(s)	609
SmoI	CTYRAG	1 cut(s)	609
Sse9I	AATT	4 cut(s)	46, 264, 559, 573
SseBI	AGGCCT	1 cut(s)	534
SsiI	CCGC	1 cut(s)	170
SspI	AATATT	1 cut(s)	223
SspMI	CTAG	2 cut(s)	204, 254
StuI	AGGCCT	1 cut(s)	534
StyD4I	CCNGG	1 cut(s)	244
TaiI	ACGT	1 cut(s)	507
TaqI	TCGA	3 cut(s)	194, 405, 610
TasI	AATT	4 cut(s)	46, 264, 559, 573
TatI	WGTACW	1 cut(s)	425
TfiI	GAWTC	4 cut(s)	19, 25, 419, 521
Tru1I	TTAA	2 cut(s)	236, 507
Tru9I	TTAA	2 cut(s)	236, 507
TscAI	CASTG	1 cut(s)	305
TseFI	GTSAC	1 cut(s)	673
TseI	GCWGC	2 cut(s)	336, 456
Tsp45I	GTSAC	1 cut(s)	673
TspDTI	ATGAA	5 cut(s)	146, 504, 510, 691, 735
TspRI	CASTG	1 cut(s)	305
XapI	RAATTY	1 cut(s)	46
XceI	RCATGY	1 cut(s)	432
XhoI	CTCGAG	1 cut(s)	609
XmiI	GTMKAC	1 cut(s)	138
XspI	CTAG	2 cut(s)	204, 254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.