FvH4_2g10620

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000519
Physical Location & Seq
Reverse (-)
9392405 .. 9392758
354 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g10620.t1

Sequence Viewer

Length: 354 bp
ATGGTGGAGGAGGTGGTATTCTTCGTAAGTATACAGGTGAGTTTAAAGCTGCTTCTTTTAGTTACGATTGCCTTTGTTAAGCACTTTGAGCTGCAAGTTATCAAAGTTGGACTACAAGAGTTGCAAAACATACAGGCTGCAAATGTCTTGGCGGAACCTGACTGTTTGGAGGCTGTCACTGATATTGCCAACCTCCAACAGACGCATACAGTTGAAGCTGGTATTGTTAATGATATTAGATGCATTCTTCATGACTTGCACAATGTTAGAATTATTCATGTGCTTAGAACCTGTAACAGAGTAACACATAGAATTGCGACAATGGCTTATGAAGCTAGTCAAATTAAGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

118

Amino Acids

13.24

Weight (kDa)

6.02

Isoelectric Point (pI)

30.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 28 - 109 2e-09 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000519)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27751 FvH4_2g10620 FvH4_4g13701 FvH4_4g17370 FvH4_6g49051
pyrus_communis pycom11g18020
rosa_chinensis RchiOBHm_Chr1g0331041 RchiOBHm_Chr2g0088901 RchiOBHm_Chr2g0100641 RchiOBHm_Chr6g0281891
rosa_laevigata RLG00000011791 RLG00000028155 RLG00000035981
rosa_multiflora Rmu_co8368635.1_g000001 Rmu_co8370105.1_g000001 Rmu_sc0000850.1_g000010 Rmu_sc0001374.1_g000060 Rmu_sc0001654.1_g000024 Rmu_sc0001840.1_g000023 Rmu_sc0001900.1_g000032 Rmu_sc0002687.1_g000008 Rmu_sc0003133.1_g000026 Rmu_sc0003252.1_g000002 Rmu_sc0004206.1_g000011 Rmu_sc0004666.1_g000002 Rmu_sc0006255.1_g000004 Rmu_sc0006812.1_g000001 Rmu_sc0007025.1_g000012 Rmu_sc0007767.1_g000020 Rmu_sc0007833.1_g000004 Rmu_sc0007848.1_g000020 Rmu_sc0007883.1_g000010 Rmu_sc0008270.1_g000003 Rmu_sc0012097.1_g000011 Rmu_sc0014445.1_g000002 Rmu_sc0023292.1_g000001
rosa_roxburghii Rroxscaffold_1G00021670 Rroxscaffold_1G00027660 Rroxscaffold_1G00056090 Rroxscaffold_2G00111250 Rroxscaffold_2G00111320 Rroxscaffold_3G00248390 Rroxscaffold_6G00394880 Rroxscaffold_7G00192450
rosa_rugosa Rorug01G0071500 Rorug01G0183900 Rorug01G0242400 Rorug02G0045300 Rorug02G0051000 Rorug02G0061700 Rorug02G0091500 Rorug02G0091600 Rorug02G0091700 Rorug02G0091800 Rorug02G0284700 Rorug02G0335100 Rorug02G0336900 Rorug02G0405500.1 Rorug02G0498300 Rorug03G0173700 Rorug03G0228900 Rorug03G0256300 Rorug04G0014300 Rorug04G0130400 Rorug04G0138100 Rorug04G0138100 Rorug04G0150400.1 Rorug05G0000600 Rorug05G0160400 Rorug05G0165600 Rorug05G0378500 Rorug06G0072000 Rorug06G0107900 Rorug06G0268700 Rorug07G0015500 Rorug07G0266300 Rorug07G0274500
rosa_samantha Rh2AG439400 Rh2AG561100 Rh2DG459400 Rh3AG236100 Rh4BG212500 Rh6AG046300 Rh6BG073000 Rh7DG249100
rosa_wichuraiana Rw2G010910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 31
AciI CCGC 1 cut(s) 152
AfaI GTAC 1 cut(s) 350
AgsI TTSAA 1 cut(s) 215
AluBI AGCT 4 cut(s) 49, 91, 218, 335
AluI AGCT 4 cut(s) 49, 91, 218, 335
ApeKI GCWGC 3 cut(s) 49, 91, 137
AsuHPI GGTGA 1 cut(s) 49
BbvI GCAGC 3 cut(s) 36, 78, 124
BfaI CTAG 2 cut(s) 336, 352
BisI GCNGC 3 cut(s) 50, 92, 138
BlsI GCNGC 3 cut(s) 51, 93, 139
BmcAI AGTACT 1 cut(s) 350
BmiI GGNNCC 1 cut(s) 156
BmsI GCATC 1 cut(s) 230
BseRI GAGGAG 1 cut(s) 23
BseXI GCAGC 3 cut(s) 36, 78, 124
BsmI GAATGC 1 cut(s) 243
BspACI CCGC 1 cut(s) 152
BspHI TCATGA 1 cut(s) 250
BspLI GGNNCC 1 cut(s) 156
BssNAI GTATAC 1 cut(s) 32
Bst1107I GTATAC 1 cut(s) 32
Bst4CI ACNGT 2 cut(s) 164, 211
BstDEI CTNAG 1 cut(s) 284
BstMWI GCNNNNNNNGC 3 cut(s) 88, 323, 332
BstV1I GCAGC 3 cut(s) 36, 78, 124
BstZ17I GTATAC 1 cut(s) 32
BtsIMutI CAGTG 1 cut(s) 177
CciI TCATGA 1 cut(s) 250
CseI GACGC 1 cut(s) 211
Csp6I GTAC 1 cut(s) 349
CviAII CATG 2 cut(s) 251, 278
CviJI RGCY 7 cut(s) 49, 91, 137, 173, 218, 326, 335
CviKI_1 RGCY 7 cut(s) 49, 91, 137, 173, 218, 326, 335
CviQI GTAC 1 cut(s) 349
DdeI CTNAG 1 cut(s) 284
DraI TTTAAA 1 cut(s) 45
EciI GGCGGA 1 cut(s) 167
EcoT22I ATGCAT 1 cut(s) 245
FaeI CATG 2 cut(s) 254, 281
FaiI YATR 7 cut(s) 32, 131, 207, 252, 279, 309, 330
FatI CATG 2 cut(s) 250, 277
FblI GTMKAC 1 cut(s) 31
Fnu4HI GCNGC 3 cut(s) 50, 92, 138
Fsp4HI GCNGC 3 cut(s) 50, 92, 138
FspBI CTAG 2 cut(s) 336, 352
GluI GCNGC 3 cut(s) 50, 92, 138
HgaI GACGC 1 cut(s) 211
Hin1II CATG 2 cut(s) 254, 281
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 1 cut(s) 32
Hpy188III TCNNGA 1 cut(s) 251
Hpy8I GTNNAC 1 cut(s) 32
HpyCH4III ACNGT 2 cut(s) 164, 211
HpyCH4V TGCA 5 cut(s) 94, 124, 140, 243, 259
HpyF10VI GCNNNNNNNGC 3 cut(s) 88, 323, 332
HpyF3I CTNAG 1 cut(s) 284
Hsp92II CATG 2 cut(s) 254, 281
LpnPI CCDG 5 cut(s) 20, 119, 171, 204, 304
Lsp1109I GCAGC 3 cut(s) 36, 78, 124
LweI GCATC 1 cut(s) 230
MaeI CTAG 2 cut(s) 336, 352
MaeIII GTNAC 4 cut(s) 61, 175, 293, 301
MboII GAAGA 2 cut(s) 13, 239
MluCI AATT 3 cut(s) 270, 312, 342
MmeI TCCRAC 2 cut(s) 88, 220
MnlI CCTC 3 cut(s) 4, 163, 203
Mph1103I ATGCAT 1 cut(s) 245
MseI TTAA 4 cut(s) 44, 78, 228, 345
Mva1269I GAATGC 1 cut(s) 243
MwoI GCNNNNNNNGC 3 cut(s) 88, 323, 332
NlaIII CATG 2 cut(s) 254, 281
NlaIV GGNNCC 1 cut(s) 156
NmuCI GTSAC 1 cut(s) 175
NsiI ATGCAT 1 cut(s) 245
PagI TCATGA 1 cut(s) 250
PctI GAATGC 1 cut(s) 243
PkrI GCNGC 3 cut(s) 51, 93, 139
PspN4I GGNNCC 1 cut(s) 156
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
SaqAI TTAA 4 cut(s) 44, 78, 228, 345
SatI GCNGC 3 cut(s) 50, 92, 138
ScaI AGTACT 1 cut(s) 350
SetI ASST 9 cut(s) 15, 39, 51, 93, 160, 195, 220, 293, 337
SfaNI GCATC 1 cut(s) 230
Sse9I AATT 3 cut(s) 270, 312, 342
SsiI CCGC 1 cut(s) 152
SspMI CTAG 2 cut(s) 336, 352
TaaI ACNGT 2 cut(s) 164, 211
TasI AATT 3 cut(s) 270, 312, 342
TatI WGTACW 1 cut(s) 348
Tru1I TTAA 4 cut(s) 44, 78, 228, 345
Tru9I TTAA 4 cut(s) 44, 78, 228, 345
TscAI CASTG 1 cut(s) 184
TseFI GTSAC 1 cut(s) 175
TseI GCWGC 3 cut(s) 49, 91, 137
Tsp45I GTSAC 1 cut(s) 175
TspDTI ATGAA 3 cut(s) 239, 266, 345
TspRI CASTG 1 cut(s) 184
XmiI GTMKAC 1 cut(s) 31
XspI CTAG 2 cut(s) 336, 352
ZrmI AGTACT 1 cut(s) 350
Zsp2I ATGCAT 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.