Rmu_sc0007848.1_g000020

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007848.1
OG0000519
Physical Location & Seq
Forward (+)
91602 .. 94108
2507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007848.1_g000020.1.cds

Sequence Viewer

Length: 1290 bp
atgatcctagacacttatgagagagcttcatgccgaaaggtgaacttccaaaagaatagtgtggtttttagtaaaaatgtcgatcactccaagcaactggctctggcaggtatcttagaggtcaaatgtgaaaaagaggatgatagatatcttgggttacctctttgggttggtaaatccaagactgcaaaatttgcctacatcaaagaaaagctctccaagaagctcatcaattggaaggcaaatattttaagctcggcaggcaaggaaactctaatcaaggctgtggcacaaacaatggtctttgtgaatcactatctattgcgaaaggctctcacaaggaaggggtttcaaggagacatgaattgcctcctatgtctagcaaggtttgaagatagtgtgcatgtgttttgcaaatgccctacaacacgggcaattctcacagctccttcattcaacctggaaagtattctacctcctaggatccactttaaagactggtgccttgatcatgcacttaaacatacaacaagattatttcgagaagcttcttatggtcttatgggcactatggaaaaaccgcaacaccaaattttggcacggcactatgacattgtttttggagccttgtcttggctagaggagttccgagtagcaaatccggtggaattcaaagcagcgtttgcactgtcggtctgcaatgtcgctacagctaaggaggttgagctgcttgcaataaaagagggccttcagtttctacagtccttccaagctgcaggtgttgtaatcgagactgactatcgtgaggccactatagagattggcaacccatattatgatctgttggagtatgctgctgtgatcgacgacaaacagatggccttaaaagaccaaacagaagtgcagatcagctttgcagctcgaacatgtaacgcagttgcacactggttggctagtttagcttttgatgacaattatagtgccatatgggcgggctcatcatacgactatgaagtaagcgatggtcgctgctctgataagccaacgacactatttcaagcatttcagcgcttgaacttcagcccaaccgtcgtggggcgccacggtaagggcccacaatgcccctcatcatggcccgtaaggttgtccatcttaattcccttcccgaatccaaccttaatgcccccacttaggtcacaggctcgcgtgaataagcccggcatcacttttactagaactactctatataaacgacacattcctattctcgtttacgatgtgggagcctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

429

Amino Acids

48.43

Weight (kDa)

9.02

Isoelectric Point (pI)

37.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000519)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27751 FvH4_2g10620 FvH4_4g13701 FvH4_4g17370 FvH4_6g49051
pyrus_communis pycom11g18020
rosa_chinensis RchiOBHm_Chr1g0331041 RchiOBHm_Chr2g0088901 RchiOBHm_Chr2g0100641 RchiOBHm_Chr6g0281891
rosa_laevigata RLG00000011791 RLG00000028155 RLG00000035981
rosa_multiflora Rmu_co8368635.1_g000001 Rmu_co8370105.1_g000001 Rmu_sc0000850.1_g000010 Rmu_sc0001374.1_g000060 Rmu_sc0001654.1_g000024 Rmu_sc0001840.1_g000023 Rmu_sc0001900.1_g000032 Rmu_sc0002687.1_g000008 Rmu_sc0003133.1_g000026 Rmu_sc0003252.1_g000002 Rmu_sc0004206.1_g000011 Rmu_sc0004666.1_g000002 Rmu_sc0006255.1_g000004 Rmu_sc0006812.1_g000001 Rmu_sc0007025.1_g000012 Rmu_sc0007767.1_g000020 Rmu_sc0007833.1_g000004 Rmu_sc0007848.1_g000020 Rmu_sc0007883.1_g000010 Rmu_sc0008270.1_g000003 Rmu_sc0012097.1_g000011 Rmu_sc0014445.1_g000002 Rmu_sc0023292.1_g000001
rosa_roxburghii Rroxscaffold_1G00021670 Rroxscaffold_1G00027660 Rroxscaffold_1G00056090 Rroxscaffold_2G00111250 Rroxscaffold_2G00111320 Rroxscaffold_3G00248390 Rroxscaffold_6G00394880 Rroxscaffold_7G00192450
rosa_rugosa Rorug01G0071500 Rorug01G0183900 Rorug01G0242400 Rorug02G0045300 Rorug02G0051000 Rorug02G0061700 Rorug02G0091500 Rorug02G0091600 Rorug02G0091700 Rorug02G0091800 Rorug02G0284700 Rorug02G0335100 Rorug02G0336900 Rorug02G0405500.1 Rorug02G0498300 Rorug03G0173700 Rorug03G0228900 Rorug03G0256300 Rorug04G0014300 Rorug04G0130400 Rorug04G0138100 Rorug04G0138100 Rorug04G0150400.1 Rorug05G0000600 Rorug05G0160400 Rorug05G0165600 Rorug05G0378500 Rorug06G0072000 Rorug06G0107900 Rorug06G0268700 Rorug07G0015500 Rorug07G0266300 Rorug07G0274500
rosa_samantha Rh2AG439400 Rh2AG561100 Rh2DG459400 Rh3AG236100 Rh4BG212500 Rh6AG046300 Rh6BG073000 Rh7DG249100
rosa_wichuraiana Rw2G010910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 767
Acc36I ACCTGC 2 cut(s) 98, 767
AccB1I GGYRCC 2 cut(s) 501, 1098
AccB7I CCANNNNNTGG 1 cut(s) 595
AccII CGCG 1 cut(s) 1206
AciI CCGC 2 cut(s) 581, 992
AclWI GGATC 2 cut(s) 478, 491
AcsI RAATTY 3 cut(s) 191, 591, 668
AcuI CTGAAG 2 cut(s) 734, 1063
AcyI GRCGYC 1 cut(s) 1099
AfeI AGCGCT 1 cut(s) 1070
AfiI CCNNNNNNNGG 6 cut(s) 595, 633, 1095, 1108, 1131, 1191
AflIII ACRYGT 1 cut(s) 926
AgsI TTSAA 6 cut(s) 353, 392, 457, 673, 1058, 1075
AjnI CCWGG 1 cut(s) 459
Alw26I GTCTC 2 cut(s) 351, 785
AlwI GGATC 2 cut(s) 478, 491
Aor51HI AGCGCT 1 cut(s) 1070
AoxI GGCC 5 cut(s) 745, 807, 879, 1111, 1133
ApaI GGGCCC 1 cut(s) 1115
ApeKI GCWGC 6 cut(s) 677, 727, 773, 854, 917, 1029
ApoI RAATTY 3 cut(s) 191, 591, 668
ArsI GACNNNNNNTTYG 2 cut(s) 602, 634
Asp700I GAANNNNTTC 1 cut(s) 468
AspA2I CCTAGG 1 cut(s) 479
AspLEI GCGC 2 cut(s) 1071, 1101
AspS9I GGNCC 4 cut(s) 745, 1111, 1112, 1134
AsuC2I CCSGG 1 cut(s) 1218
AsuHPI GGTGA 1 cut(s) 52
AvrII CCTAGG 1 cut(s) 479
BaeGI GKGCMC 2 cut(s) 569, 1115
BamHI GGATCC 1 cut(s) 483
BanI GGYRCC 2 cut(s) 501, 1098
BanII GRGCYC 2 cut(s) 998, 1115
BbvI GCAGC 6 cut(s) 689, 714, 760, 841, 929, 1016
BccI CCATC 3 cut(s) 871, 1016, 1157
BceAI ACGGC 1 cut(s) 617
BciT130I CCWGG 1 cut(s) 461
BclI TGATCA 1 cut(s) 508
BcnI CCSGG 1 cut(s) 1218
BcoDI GTCTC 2 cut(s) 351, 785
BfaI CTAG 6 cut(s) 8, 380, 480, 638, 954, 1233
BfmI CTRYAG 4 cut(s) 708, 758, 774, 813
BfoI RGCGCY 2 cut(s) 1072, 1102
BfuAI ACCTGC 2 cut(s) 98, 767
BglI GCCNNNNNGGC 1 cut(s) 989
BisI GCNGC 6 cut(s) 678, 728, 774, 855, 918, 1030
BlnI CCTAGG 1 cut(s) 479
BlsI GCNGC 6 cut(s) 679, 729, 775, 856, 919, 1031
Bme1390I CCNGG 2 cut(s) 461, 1218
BmgT120I GGNCC 4 cut(s) 745, 1111, 1112, 1134
BmiI GGNNCC 6 cut(s) 485, 503, 625, 1100, 1113, 1285
BmrFI CCNGG 2 cut(s) 461, 1218
BmsI GCATC 1 cut(s) 1230
Bpu10I CCTNAGC 1 cut(s) 714
BpuMI CCSGG 1 cut(s) 1218
BsaBI GATNNNNATC 1 cut(s) 147
BsaHI GRCGYC 1 cut(s) 1099
BsaJI CCNNGG 2 cut(s) 479, 1102
BsaWI WCCGGW 1 cut(s) 661
Bsc4I CCNNNNNNNGG 6 cut(s) 595, 633, 1095, 1108, 1131, 1191
Bse1I ACTGG 3 cut(s) 102, 503, 950
Bse3DI GCAATG 1 cut(s) 706
Bse8I GATNNNNATC 1 cut(s) 147
BseBI CCWGG 1 cut(s) 461
BseDI CCNNGG 2 cut(s) 479, 1102
BseGI GGATG 1 cut(s) 145
BseJI GATNNNNATC 1 cut(s) 147
BseLI CCNNNNNNNGG 6 cut(s) 595, 633, 1095, 1108, 1131, 1191
BseMI GCAATG 1 cut(s) 706
BseNI ACTGG 3 cut(s) 102, 503, 950
BseRI GAGGAG 1 cut(s) 656
BseSI GKGCMC 2 cut(s) 569, 1115
BseXI GCAGC 6 cut(s) 689, 714, 760, 841, 929, 1016
BsgI GTGCAG 1 cut(s) 923
Bsh1236I CGCG 1 cut(s) 1206
BshFI GGCC 5 cut(s) 747, 809, 881, 1113, 1135
BshNI GGYRCC 2 cut(s) 501, 1098
BsiSI CCGG 2 cut(s) 662, 1218
BslI CCNNNNNNNGG 6 cut(s) 595, 633, 1095, 1108, 1131, 1191
BsmAI GTCTC 2 cut(s) 351, 785
BsnI GGCC 5 cut(s) 747, 809, 881, 1113, 1135
Bsp120I GGGCCC 1 cut(s) 1111
Bsp1286I GDGCHC 3 cut(s) 569, 998, 1115
Bsp143I GATC 7 cut(s) 3, 82, 483, 508, 838, 861, 906
BspACI CCGC 2 cut(s) 581, 992
BspANI GGCC 5 cut(s) 747, 809, 881, 1113, 1135
BspFNI CGCG 1 cut(s) 1206
BspLI GGNNCC 6 cut(s) 485, 503, 625, 1100, 1113, 1285
BspMAI CTGCAG 1 cut(s) 778
BspMI ACCTGC 2 cut(s) 98, 767
BspPI GGATC 2 cut(s) 478, 491
BspT107I GGYRCC 2 cut(s) 501, 1098
BsrDI GCAATG 1 cut(s) 706
BsrI ACTGG 3 cut(s) 102, 503, 950
BssECI CCNNGG 2 cut(s) 479, 1102
BssMI GATC 7 cut(s) 3, 82, 483, 508, 838, 861, 906
BssNI GRCGYC 1 cut(s) 1099
BssT1I CCWWGG 1 cut(s) 479
Bst2UI CCWGG 1 cut(s) 461
Bst4CI ACNGT 4 cut(s) 690, 762, 1090, 1106
BstACI GRCGYC 1 cut(s) 1099
BstAPI GCANNNNNTGC 2 cut(s) 194, 683
BstC8I GCNNGC 4 cut(s) 262, 732, 994, 1204
BstDEI CTNAG 3 cut(s) 115, 714, 1190
BstDSI CCRYGG 1 cut(s) 1102
BstEII GGTNACC 1 cut(s) 156
BstF5I GGATG 1 cut(s) 145
BstFNI CGCG 1 cut(s) 1206
BstH2I RGCGCY 2 cut(s) 1072, 1102
BstHHI GCGC 2 cut(s) 1071, 1101
BstKTI GATC 7 cut(s) 6, 85, 486, 511, 841, 864, 909
BstMAI GTCTC 2 cut(s) 351, 785
BstMBI GATC 7 cut(s) 3, 82, 483, 508, 838, 861, 906
BstMWI GCNNNNNNNGC 7 cut(s) 194, 261, 683, 959, 989, 1026, 1119
BstNI CCWGG 1 cut(s) 461
BstNSI RCATGY 2 cut(s) 407, 930
BstPI GGTNACC 1 cut(s) 156
BstSCI CCNGG 2 cut(s) 459, 1216
BstSFI CTRYAG 4 cut(s) 708, 758, 774, 813
BstSLI GKGCMC 2 cut(s) 569, 1115
BstUI CGCG 1 cut(s) 1206
BstV1I GCAGC 6 cut(s) 689, 714, 760, 841, 929, 1016
BstX2I RGATCY 1 cut(s) 483
BstXI CCANNNNNNTGG 1 cut(s) 97
BstYI RGATCY 1 cut(s) 483
BsuRI GGCC 5 cut(s) 747, 809, 881, 1113, 1135
BtgI CCRYGG 1 cut(s) 1102
BtgZI GCGATG 1 cut(s) 1035
BtsCI GGATG 1 cut(s) 145
BtsIMutI CAGTG 2 cut(s) 686, 943
BveI ACCTGC 2 cut(s) 98, 767
Cac8I GCNNGC 4 cut(s) 262, 732, 994, 1204
CfoI GCGC 2 cut(s) 1071, 1101
Cfr13I GGNCC 4 cut(s) 745, 1111, 1112, 1134
CspCI CAANNNNNGTGG 4 cut(s) 645, 680, 1074, 1109
CviAII CATG 6 cut(s) 30, 361, 404, 512, 927, 1131
DdeI CTNAG 3 cut(s) 115, 714, 1190
DinI GGCGCC 1 cut(s) 1100
DpnI GATC 7 cut(s) 5, 84, 485, 510, 840, 863, 908
DpnII GATC 7 cut(s) 3, 82, 483, 508, 838, 861, 906
DraI TTTAAA 1 cut(s) 493
Eco130I CCWWGG 1 cut(s) 479
Eco24I GRGCYC 2 cut(s) 998, 1115
Eco32I GATATC 1 cut(s) 149
Eco47III AGCGCT 1 cut(s) 1070
Eco57I CTGAAG 2 cut(s) 734, 1063
Eco91I GGTNACC 1 cut(s) 156
EcoO109I RGGNCCY 2 cut(s) 745, 1111
EcoO65I GGTNACC 1 cut(s) 156
EcoRI GAATTC 1 cut(s) 668
EcoRII CCWGG 1 cut(s) 459
EcoRV GATATC 1 cut(s) 149
EcoT14I CCWWGG 1 cut(s) 479
EcoT38I GRGCYC 2 cut(s) 998, 1115
EgeI GGCGCC 1 cut(s) 1100
EheI GGCGCC 1 cut(s) 1100
ErhI CCWWGG 1 cut(s) 479
FaeI CATG 6 cut(s) 33, 364, 407, 515, 930, 1134
FalI AAGNNNNNCTT 4 cut(s) 29, 61, 732, 764
FatI CATG 6 cut(s) 29, 360, 403, 511, 926, 1130
FauI CCCGC 1 cut(s) 985
FauNDI CATATG 1 cut(s) 986
FbaI TGATCA 1 cut(s) 508
Fnu4HI GCNGC 6 cut(s) 678, 728, 774, 855, 918, 1030
FokI GGATG 1 cut(s) 152
FriOI GRGCYC 2 cut(s) 998, 1115
Fsp4HI GCNGC 6 cut(s) 678, 728, 774, 855, 918, 1030
FspBI CTAG 6 cut(s) 8, 380, 480, 638, 954, 1233
GlaI GCGC 2 cut(s) 1070, 1100
GluI GCNGC 6 cut(s) 678, 728, 774, 855, 918, 1030
HaeII RGCGCY 2 cut(s) 1072, 1102
HaeIII GGCC 5 cut(s) 747, 809, 881, 1113, 1135
HapII CCGG 2 cut(s) 662, 1218
HhaI GCGC 2 cut(s) 1071, 1101
Hin1I GRCGYC 1 cut(s) 1099
Hin1II CATG 6 cut(s) 33, 364, 407, 515, 930, 1134
Hin6I GCGC 2 cut(s) 1069, 1099
HinP1I GCGC 2 cut(s) 1069, 1099
HindIII AAGCTT 1 cut(s) 546
HinfI GANTC 2 cut(s) 310, 1168
HpaII CCGG 2 cut(s) 662, 1218
HphI GGTGA 1 cut(s) 52
Hpy166II GTNNAC 2 cut(s) 43, 1273
Hpy188I TCNGA 2 cut(s) 650, 1036
Hpy188III TCNNGA 4 cut(s) 542, 790, 803, 1165
Hpy8I GTNNAC 2 cut(s) 43, 1273
Hpy99I CGWCG 2 cut(s) 869, 1094
HpyAV CCTTC 6 cut(s) 232, 337, 459, 758, 775, 1171
HpyCH4III ACNGT 4 cut(s) 690, 762, 1090, 1106
HpyF10VI GCNNNNNNNGC 7 cut(s) 194, 261, 683, 959, 989, 1026, 1119
HpyF3I CTNAG 3 cut(s) 115, 714, 1190
Hsp92I GRCGYC 1 cut(s) 1099
Hsp92II CATG 6 cut(s) 33, 364, 407, 515, 930, 1134
HspAI GCGC 2 cut(s) 1069, 1099
KasI GGCGCC 1 cut(s) 1098
Ksp22I TGATCA 1 cut(s) 508
Kzo9I GATC 7 cut(s) 3, 82, 483, 508, 838, 861, 906
LmnI GCTCC 3 cut(s) 451, 623, 1283
Lsp1109I GCAGC 6 cut(s) 689, 714, 760, 841, 929, 1016
LweI GCATC 1 cut(s) 1230
MaeI CTAG 6 cut(s) 8, 380, 480, 638, 954, 1233
MaeIII GTNAC 3 cut(s) 156, 929, 1194
MalI GATC 7 cut(s) 5, 84, 485, 510, 840, 863, 908
MboI GATC 7 cut(s) 3, 82, 483, 508, 838, 861, 906
MboII GAAGA 1 cut(s) 404
MfeI CAATTG 1 cut(s) 232
MflI RGATCY 1 cut(s) 483
MhlI GDGCHC 3 cut(s) 569, 998, 1115
MluCI AATT 8 cut(s) 191, 232, 364, 435, 591, 668, 973, 1155
Mly113I GGCGCC 1 cut(s) 1099
MmeI TCCRAC 2 cut(s) 825, 1196
MroXI GAANNNNTTC 1 cut(s) 468
MseI TTAA 6 cut(s) 251, 492, 519, 884, 1154, 1178
MspI CCGG 2 cut(s) 662, 1218
MspR9I CCNGG 2 cut(s) 461, 1218
MunI CAATTG 1 cut(s) 232
MvaI CCWGG 1 cut(s) 461
MvnI CGCG 1 cut(s) 1206
MwoI GCNNNNNNNGC 7 cut(s) 194, 261, 683, 959, 989, 1026, 1119
NarI GGCGCC 1 cut(s) 1099
NciI CCSGG 1 cut(s) 1218
NdeI CATATG 1 cut(s) 986
NdeII GATC 7 cut(s) 3, 82, 483, 508, 838, 861, 906
NlaIII CATG 6 cut(s) 33, 364, 407, 515, 930, 1134
NlaIV GGNNCC 6 cut(s) 485, 503, 625, 1100, 1113, 1285
NmeAIII GCCGAG 1 cut(s) 236
NmuCI GTSAC 1 cut(s) 1194
NspI RCATGY 2 cut(s) 407, 930
PaqCI CACCTGC 1 cut(s) 767
PciI ACATGT 1 cut(s) 926
PdmI GAANNNNTTC 1 cut(s) 468
PfeI GAWTC 2 cut(s) 310, 1168
PflMI CCANNNNNTGG 1 cut(s) 595
PkrI GCNGC 6 cut(s) 679, 729, 775, 856, 919, 1031
PluTI GGCGCC 1 cut(s) 1102
PscI ACATGT 1 cut(s) 926
Psp6I CCWGG 1 cut(s) 459
PspEI GGTNACC 1 cut(s) 156
PspGI CCWGG 1 cut(s) 459
PspN4I GGNNCC 6 cut(s) 485, 503, 625, 1100, 1113, 1285
PspOMI GGGCCC 1 cut(s) 1111
PspPI GGNCC 4 cut(s) 745, 1111, 1112, 1134
PstI CTGCAG 1 cut(s) 778
PsuI RGATCY 1 cut(s) 483
SaqAI TTAA 6 cut(s) 251, 492, 519, 884, 1154, 1178
SatI GCNGC 6 cut(s) 678, 728, 774, 855, 918, 1030
Sau3AI GATC 7 cut(s) 3, 82, 483, 508, 838, 861, 906
Sau96I GGNCC 4 cut(s) 745, 1111, 1112, 1134
ScrFI CCNGG 2 cut(s) 461, 1218
SduI GDGCHC 3 cut(s) 569, 998, 1115
SfaNI GCATC 1 cut(s) 1230
SfcI CTRYAG 4 cut(s) 708, 758, 774, 813
SfoI GGCGCC 1 cut(s) 1100
Sse9I AATT 8 cut(s) 191, 232, 364, 435, 591, 668, 973, 1155
SsiI CCGC 2 cut(s) 581, 992
SspDI GGCGCC 1 cut(s) 1098
SspI AATATT 1 cut(s) 247
SspMI CTAG 6 cut(s) 8, 380, 480, 638, 954, 1233
StyD4I CCNGG 2 cut(s) 459, 1216
StyI CCWWGG 1 cut(s) 479
TaaI ACNGT 4 cut(s) 690, 762, 1090, 1106
TaqI TCGA 5 cut(s) 81, 541, 789, 864, 922
TaqII GACCGA 1 cut(s) 682
TasI AATT 8 cut(s) 191, 232, 364, 435, 591, 668, 973, 1155
TfiI GAWTC 2 cut(s) 310, 1168
Tru1I TTAA 6 cut(s) 251, 492, 519, 884, 1154, 1178
Tru9I TTAA 6 cut(s) 251, 492, 519, 884, 1154, 1178
TscAI CASTG 2 cut(s) 693, 950
TseFI GTSAC 1 cut(s) 1194
TseI GCWGC 6 cut(s) 677, 727, 773, 854, 917, 1029
Tsp45I GTSAC 1 cut(s) 1194
TspDTI ATGAA 4 cut(s) 18, 377, 441, 1026
TspRI CASTG 2 cut(s) 693, 950
Van91I CCANNNNNTGG 1 cut(s) 595
XapI RAATTY 3 cut(s) 191, 591, 668
XceI RCATGY 2 cut(s) 407, 930
XmaJI CCTAGG 1 cut(s) 479
XmnI GAANNNNTTC 1 cut(s) 468
XspI CTAG 6 cut(s) 8, 380, 480, 638, 954, 1233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.