Rh6AG046300

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000519
Physical Location & Seq
Forward (+)
6708831 .. 6709157
327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG046300.1

Sequence Viewer

Length: 327 bp
ATGTTGAATTATCTGCTATCTGGAAAGGGCATTGGCAATTTACAATTGCAGCAAGTTGAAATTGAAACTGATTGTCTTCTTGCAGTCCATCACATCAACAGCGCTATTGAAGACCTTTCTGAGCTAAGTAGCTTAGTTCTAGACATTCGTGGCAAGATGCAGTCTATGCAGGGTGTCAAAGTTCAGTTTGCTCCTAGATCATGTAATAGTATAGCTCATCGTCTGGCTAGTCATGCATATGATGCAGTTCACCGTGAATCTTGGCAGGGACACCCTCCTCCTAGTATTCATGACTTAGTTAACAAAGAGTGTAACCTCATCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

108

Amino Acids

11.98

Weight (kDa)

6.12

Isoelectric Point (pI)

60.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 13 - 79 2.4e-10 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000519)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27751 FvH4_2g10620 FvH4_4g13701 FvH4_4g17370 FvH4_6g49051
pyrus_communis pycom11g18020
rosa_chinensis RchiOBHm_Chr1g0331041 RchiOBHm_Chr2g0088901 RchiOBHm_Chr2g0100641 RchiOBHm_Chr6g0281891
rosa_laevigata RLG00000011791 RLG00000028155 RLG00000035981
rosa_multiflora Rmu_co8368635.1_g000001 Rmu_co8370105.1_g000001 Rmu_sc0000850.1_g000010 Rmu_sc0001374.1_g000060 Rmu_sc0001654.1_g000024 Rmu_sc0001840.1_g000023 Rmu_sc0001900.1_g000032 Rmu_sc0002687.1_g000008 Rmu_sc0003133.1_g000026 Rmu_sc0003252.1_g000002 Rmu_sc0004206.1_g000011 Rmu_sc0004666.1_g000002 Rmu_sc0006255.1_g000004 Rmu_sc0006812.1_g000001 Rmu_sc0007025.1_g000012 Rmu_sc0007767.1_g000020 Rmu_sc0007833.1_g000004 Rmu_sc0007848.1_g000020 Rmu_sc0007883.1_g000010 Rmu_sc0008270.1_g000003 Rmu_sc0012097.1_g000011 Rmu_sc0014445.1_g000002 Rmu_sc0023292.1_g000001
rosa_roxburghii Rroxscaffold_1G00021670 Rroxscaffold_1G00027660 Rroxscaffold_1G00056090 Rroxscaffold_2G00111250 Rroxscaffold_2G00111320 Rroxscaffold_3G00248390 Rroxscaffold_6G00394880 Rroxscaffold_7G00192450
rosa_rugosa Rorug01G0071500 Rorug01G0183900 Rorug01G0242400 Rorug02G0045300 Rorug02G0051000 Rorug02G0061700 Rorug02G0091500 Rorug02G0091600 Rorug02G0091700 Rorug02G0091800 Rorug02G0284700 Rorug02G0335100 Rorug02G0336900 Rorug02G0405500.1 Rorug02G0498300 Rorug03G0173700 Rorug03G0228900 Rorug03G0256300 Rorug04G0014300 Rorug04G0130400 Rorug04G0138100 Rorug04G0138100 Rorug04G0150400.1 Rorug05G0000600 Rorug05G0160400 Rorug05G0165600 Rorug05G0378500 Rorug06G0072000 Rorug06G0107900 Rorug06G0268700 Rorug07G0015500 Rorug07G0266300 Rorug07G0274500
rosa_samantha Rh2AG439400 Rh2AG561100 Rh2DG459400 Rh3AG236100 Rh4BG212500 Rh6AG046300 Rh6BG073000 Rh7DG249100
rosa_wichuraiana Rw2G010910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfeI AGCGCT 1 cut(s) 103
AgsI TTSAA 4 cut(s) 7, 59, 65, 110
AluBI AGCT 3 cut(s) 124, 132, 215
AluI AGCT 3 cut(s) 124, 132, 215
Aor51HI AGCGCT 1 cut(s) 103
ApeKI GCWGC 1 cut(s) 49
AspLEI GCGC 1 cut(s) 104
AsuHPI GGTGA 1 cut(s) 242
BbsI GAAGAC 2 cut(s) 68, 117
BbvI GCAGC 1 cut(s) 61
BccI CCATC 1 cut(s) 96
BfaI CTAG 4 cut(s) 140, 195, 228, 282
BfoI RGCGCY 1 cut(s) 105
BisI GCNGC 1 cut(s) 50
BlsI GCNGC 1 cut(s) 51
BmsI GCATC 2 cut(s) 147, 232
BpiI GAAGAC 2 cut(s) 68, 117
BseGI GGATG 1 cut(s) 318
BseMII CTCAG 1 cut(s) 111
BseRI GAGGAG 1 cut(s) 267
BseXI GCAGC 1 cut(s) 61
BslFI GGGAC 1 cut(s) 282
BsmFI GGGAC 1 cut(s) 282
Bsp143I GATC 1 cut(s) 197
BspCNI CTCAG 1 cut(s) 112
BspHI TCATGA 1 cut(s) 289
BssMI GATC 1 cut(s) 197
Bst4CI ACNGT 1 cut(s) 254
BstAPI GCANNNNNTGC 2 cut(s) 166, 242
BstDEI CTNAG 4 cut(s) 120, 125, 133, 295
BstF5I GGATG 1 cut(s) 318
BstH2I RGCGCY 1 cut(s) 105
BstHHI GCGC 1 cut(s) 104
BstKTI GATC 1 cut(s) 200
BstMBI GATC 1 cut(s) 197
BstMWI GCNNNNNNNGC 3 cut(s) 166, 233, 242
BstV1I GCAGC 1 cut(s) 61
BstV2I GAAGAC 2 cut(s) 68, 117
BtsCI GGATG 1 cut(s) 318
CciI TCATGA 1 cut(s) 289
CfoI GCGC 1 cut(s) 104
CviAII CATG 4 cut(s) 201, 233, 290, 324
CviJI RGCY 4 cut(s) 124, 132, 215, 227
CviKI_1 RGCY 4 cut(s) 124, 132, 215, 227
DdeI CTNAG 4 cut(s) 120, 125, 133, 295
DpnI GATC 1 cut(s) 199
DpnII GATC 1 cut(s) 197
Eco47III AGCGCT 1 cut(s) 103
EcoT22I ATGCAT 1 cut(s) 238
FaeI CATG 4 cut(s) 204, 236, 293, 327
FaiI YATR 8 cut(s) 167, 202, 212, 234, 238, 240, 291, 325
FaqI GGGAC 1 cut(s) 282
FatI CATG 4 cut(s) 200, 232, 289, 323
FauNDI CATATG 1 cut(s) 238
Fnu4HI GCNGC 1 cut(s) 50
FokI GGATG 1 cut(s) 305
Fsp4HI GCNGC 1 cut(s) 50
FspBI CTAG 4 cut(s) 140, 195, 228, 282
GlaI GCGC 1 cut(s) 103
GluI GCNGC 1 cut(s) 50
HaeII RGCGCY 1 cut(s) 105
HhaI GCGC 1 cut(s) 104
Hin1II CATG 4 cut(s) 204, 236, 293, 327
Hin6I GCGC 1 cut(s) 102
HinP1I GCGC 1 cut(s) 102
HincII GTYRAC 1 cut(s) 301
HindII GTYRAC 1 cut(s) 301
HinfI GANTC 1 cut(s) 257
HpaI GTTAAC 1 cut(s) 301
HphI GGTGA 1 cut(s) 242
Hpy166II GTNNAC 2 cut(s) 250, 301
Hpy188I TCNGA 1 cut(s) 121
Hpy188III TCNNGA 3 cut(s) 21, 140, 290
Hpy8I GTNNAC 2 cut(s) 250, 301
HpyCH4III ACNGT 1 cut(s) 254
HpyCH4V TGCA 6 cut(s) 49, 83, 160, 169, 236, 245
HpyF10VI GCNNNNNNNGC 3 cut(s) 166, 233, 242
HpyF3I CTNAG 4 cut(s) 120, 125, 133, 295
Hsp92II CATG 4 cut(s) 204, 236, 293, 327
HspAI GCGC 1 cut(s) 102
KspAI GTTAAC 1 cut(s) 301
Kzo9I GATC 1 cut(s) 197
LmnI GCTCC 1 cut(s) 196
LpnPI CCDG 4 cut(s) 6, 155, 209, 251
Lsp1109I GCAGC 1 cut(s) 61
LweI GCATC 2 cut(s) 147, 232
MaeI CTAG 4 cut(s) 140, 195, 228, 282
MaeIII GTNAC 1 cut(s) 311
MalI GATC 1 cut(s) 199
MboI GATC 1 cut(s) 197
MboII GAAGA 2 cut(s) 68, 122
MfeI CAATTG 1 cut(s) 44
MluCI AATT 4 cut(s) 7, 37, 44, 60
MnlI CCTC 3 cut(s) 285, 288, 326
Mph1103I ATGCAT 1 cut(s) 238
MseI TTAA 1 cut(s) 300
MslI CAYNNNNRTG 1 cut(s) 237
MunI CAATTG 1 cut(s) 44
MwoI GCNNNNNNNGC 3 cut(s) 166, 233, 242
NdeI CATATG 1 cut(s) 238
NdeII GATC 1 cut(s) 197
NlaIII CATG 4 cut(s) 204, 236, 293, 327
NsiI ATGCAT 1 cut(s) 238
PagI TCATGA 1 cut(s) 289
PfeI GAWTC 1 cut(s) 257
PkrI GCNGC 1 cut(s) 51
RseI CAYNNNNRTG 1 cut(s) 237
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 1 cut(s) 50
Sau3AI GATC 1 cut(s) 197
SetI ASST 5 cut(s) 117, 126, 134, 217, 318
SfaNI GCATC 2 cut(s) 147, 232
SmiMI CAYNNNNRTG 1 cut(s) 237
Sse9I AATT 4 cut(s) 7, 37, 44, 60
SspMI CTAG 4 cut(s) 140, 195, 228, 282
TaaI ACNGT 1 cut(s) 254
TasI AATT 4 cut(s) 7, 37, 44, 60
TfiI GAWTC 1 cut(s) 257
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TseI GCWGC 1 cut(s) 49
TspDTI ATGAA 1 cut(s) 278
XbaI TCTAGA 1 cut(s) 139
XspI CTAG 4 cut(s) 140, 195, 228, 282
Zsp2I ATGCAT 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.