RchiOBHm_Chr2g0088901

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000519
Physical Location & Seq
Forward (+)
3245788 .. 3247428
1641 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46420

Sequence Viewer

Length: 288 bp
ATGCAGGTCAGCAATATCATTATCGAAACAGACTGCCTGGAAGCTGTGTCTTGTATCGCAGAGACCCAATTTACTTATGTTCATGATGAAGGGATAATTGATGATATTCGGCAGGAGCTAAACCATAGAACTGACATTAGTGTGCAGCATACCTCACGAGTGAACAACCGTGTAGCCCATTGTTTAGCTAATTTAGCTTTTGAAGCTAGGCATAGCTCTATGTGGTTTATGAAACCTCCAGATTTCATTGTGGGAGTACTCAACGATGATTGTAAGCATTTGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

95

Amino Acids

10.92

Weight (kDa)

5.33

Isoelectric Point (pI)

30.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 3 - 66 6.3e-08 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000519)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27751 FvH4_2g10620 FvH4_4g13701 FvH4_4g17370 FvH4_6g49051
pyrus_communis pycom11g18020
rosa_chinensis RchiOBHm_Chr1g0331041 RchiOBHm_Chr2g0088901 RchiOBHm_Chr2g0100641 RchiOBHm_Chr6g0281891
rosa_laevigata RLG00000011791 RLG00000028155 RLG00000035981
rosa_multiflora Rmu_co8368635.1_g000001 Rmu_co8370105.1_g000001 Rmu_sc0000850.1_g000010 Rmu_sc0001374.1_g000060 Rmu_sc0001654.1_g000024 Rmu_sc0001840.1_g000023 Rmu_sc0001900.1_g000032 Rmu_sc0002687.1_g000008 Rmu_sc0003133.1_g000026 Rmu_sc0003252.1_g000002 Rmu_sc0004206.1_g000011 Rmu_sc0004666.1_g000002 Rmu_sc0006255.1_g000004 Rmu_sc0006812.1_g000001 Rmu_sc0007025.1_g000012 Rmu_sc0007767.1_g000020 Rmu_sc0007833.1_g000004 Rmu_sc0007848.1_g000020 Rmu_sc0007883.1_g000010 Rmu_sc0008270.1_g000003 Rmu_sc0012097.1_g000011 Rmu_sc0014445.1_g000002 Rmu_sc0023292.1_g000001
rosa_roxburghii Rroxscaffold_1G00021670 Rroxscaffold_1G00027660 Rroxscaffold_1G00056090 Rroxscaffold_2G00111250 Rroxscaffold_2G00111320 Rroxscaffold_3G00248390 Rroxscaffold_6G00394880 Rroxscaffold_7G00192450
rosa_rugosa Rorug01G0071500 Rorug01G0183900 Rorug01G0242400 Rorug02G0045300 Rorug02G0051000 Rorug02G0061700 Rorug02G0091500 Rorug02G0091600 Rorug02G0091700 Rorug02G0091800 Rorug02G0284700 Rorug02G0335100 Rorug02G0336900 Rorug02G0405500.1 Rorug02G0498300 Rorug03G0173700 Rorug03G0228900 Rorug03G0256300 Rorug04G0014300 Rorug04G0130400 Rorug04G0138100 Rorug04G0138100 Rorug04G0150400.1 Rorug05G0000600 Rorug05G0160400 Rorug05G0165600 Rorug05G0378500 Rorug06G0072000 Rorug06G0107900 Rorug06G0268700 Rorug07G0015500 Rorug07G0266300 Rorug07G0274500
rosa_samantha Rh2AG439400 Rh2AG561100 Rh2DG459400 Rh3AG236100 Rh4BG212500 Rh6AG046300 Rh6BG073000 Rh7DG249100
rosa_wichuraiana Rw2G010910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 258
AgsI TTSAA 1 cut(s) 203
AjnI CCWGG 1 cut(s) 36
AluBI AGCT 6 cut(s) 44, 118, 188, 197, 206, 216
AluI AGCT 6 cut(s) 44, 118, 188, 197, 206, 216
Alw26I GTCTC 1 cut(s) 56
ApeKI GCWGC 1 cut(s) 145
BauI CACGAG 1 cut(s) 156
BbvI GCAGC 1 cut(s) 157
BciT130I CCWGG 1 cut(s) 38
BcoDI GTCTC 1 cut(s) 56
BfaI CTAG 1 cut(s) 207
BisI GCNGC 1 cut(s) 146
BlsI GCNGC 1 cut(s) 147
BmcAI AGTACT 1 cut(s) 258
Bme1390I CCNGG 1 cut(s) 38
BmrFI CCNGG 1 cut(s) 38
BpmI CTGGAG 1 cut(s) 222
BsaI GGTCTC 1 cut(s) 56
BseBI CCWGG 1 cut(s) 38
BseXI GCAGC 1 cut(s) 157
BsgI GTGCAG 1 cut(s) 164
BsmAI GTCTC 1 cut(s) 56
Bso31I GGTCTC 1 cut(s) 56
BspHI TCATGA 1 cut(s) 82
BspTNI GGTCTC 1 cut(s) 56
BssSI CACGAG 1 cut(s) 156
Bst2BI CACGAG 1 cut(s) 156
Bst2UI CCWGG 1 cut(s) 38
Bst4CI ACNGT 1 cut(s) 170
BstMAI GTCTC 1 cut(s) 56
BstMWI GCNNNNNNNGC 2 cut(s) 194, 203
BstNI CCWGG 1 cut(s) 38
BstSCI CCNGG 1 cut(s) 36
BstV1I GCAGC 1 cut(s) 157
CciI TCATGA 1 cut(s) 82
Csp6I GTAC 1 cut(s) 257
CviAII CATG 1 cut(s) 83
CviJI RGCY 7 cut(s) 44, 118, 176, 188, 197, 206, 216
CviKI_1 RGCY 7 cut(s) 44, 118, 176, 188, 197, 206, 216
CviQI GTAC 1 cut(s) 257
Eco31I GGTCTC 1 cut(s) 56
EcoRII CCWGG 1 cut(s) 36
FaeI CATG 1 cut(s) 86
FaiI YATR 7 cut(s) 78, 84, 126, 150, 213, 221, 230
FatI CATG 1 cut(s) 82
Fnu4HI GCNGC 1 cut(s) 146
Fsp4HI GCNGC 1 cut(s) 146
FspBI CTAG 1 cut(s) 207
GluI GCNGC 1 cut(s) 146
GsuI CTGGAG 1 cut(s) 222
Hin1II CATG 1 cut(s) 86
Hpy166II GTNNAC 1 cut(s) 163
Hpy188III TCNNGA 3 cut(s) 83, 156, 239
Hpy8I GTNNAC 1 cut(s) 163
HpyAV CCTTC 1 cut(s) 83
HpyCH4III ACNGT 1 cut(s) 170
HpyCH4V TGCA 2 cut(s) 4, 145
HpyF10VI GCNNNNNNNGC 2 cut(s) 194, 203
Hsp92II CATG 1 cut(s) 86
LmnI GCTCC 1 cut(s) 115
LpnPI CCDG 4 cut(s) 23, 50, 98, 252
Lsp1109I GCAGC 1 cut(s) 157
MaeI CTAG 1 cut(s) 207
MluCI AATT 3 cut(s) 68, 96, 190
MnlI CCTC 3 cut(s) 163, 246, 276
MslI CAYNNNNRTG 1 cut(s) 140
MspR9I CCNGG 1 cut(s) 38
MvaI CCWGG 1 cut(s) 38
MwoI GCNNNNNNNGC 2 cut(s) 194, 203
NlaIII CATG 1 cut(s) 86
PagI TCATGA 1 cut(s) 82
PkrI GCNGC 1 cut(s) 147
Psp6I CCWGG 1 cut(s) 36
PspGI CCWGG 1 cut(s) 36
RsaI GTAC 1 cut(s) 258
RsaNI GTAC 1 cut(s) 257
RseI CAYNNNNRTG 1 cut(s) 140
SatI GCNGC 1 cut(s) 146
ScaI AGTACT 1 cut(s) 258
ScrFI CCNGG 1 cut(s) 38
SmiMI CAYNNNNRTG 1 cut(s) 140
Sse9I AATT 3 cut(s) 68, 96, 190
SspMI CTAG 1 cut(s) 207
StyD4I CCNGG 1 cut(s) 36
TaaI ACNGT 1 cut(s) 170
TaqI TCGA 1 cut(s) 24
TasI AATT 3 cut(s) 68, 96, 190
TatI WGTACW 1 cut(s) 256
TseI GCWGC 1 cut(s) 145
TspDTI ATGAA 4 cut(s) 71, 102, 235, 245
XspI CTAG 1 cut(s) 207
ZrmI AGTACT 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.